Wall clock time and date at job start Mon Mar 30 2020 04:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86804 * 119.99813 * 2 1 4 4 H 1.48497 * 109.47007 * 270.00222 * 3 2 1 5 5 H 1.48497 * 109.46799 * 30.00572 * 3 2 1 6 6 H 1.48502 * 109.46681 * 150.00434 * 3 2 1 7 7 C 1.38800 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99902 * 0.02562 * 7 2 1 9 9 S 1.76203 * 120.00082 * 179.97438 * 7 2 1 10 10 C 1.80994 * 99.99877 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47261 * 180.02562 * 10 9 7 12 12 C 1.52993 * 109.47360 * 179.97438 * 11 10 9 13 13 N 1.46905 * 109.47039 * 180.02562 * 12 11 10 14 14 C 1.46901 * 110.99870 * 180.02562 * 13 12 11 15 15 C 1.53004 * 109.46916 * 180.02562 * 14 13 12 16 16 H 1.09002 * 110.50427 * 62.25957 * 15 14 13 17 17 C 1.54092 * 110.56182 * 184.99969 * 15 14 13 18 18 O 1.45699 * 104.00626 * 118.57251 * 17 15 14 19 19 C 1.33768 * 109.47798 * 359.97438 * 18 17 15 20 20 O 1.21512 * 123.06847 * 179.97438 * 19 18 17 21 21 N 1.34000 * 113.85556 * 359.97438 * 19 18 17 22 22 H 0.96995 * 120.00097 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.47518 * 60.00554 * 10 9 7 24 24 H 1.08998 * 109.47383 * 300.00138 * 10 9 7 25 25 H 1.09001 * 109.46514 * 59.99802 * 11 10 9 26 26 H 1.08998 * 109.46924 * 300.00283 * 11 10 9 27 27 H 1.09001 * 109.47393 * 60.00433 * 12 11 10 28 28 H 1.08998 * 109.47408 * 300.00078 * 12 11 10 29 29 H 1.00901 * 110.99869 * 56.04956 * 13 12 11 30 30 H 1.09004 * 109.47031 * 299.99620 * 14 13 12 31 31 H 1.08995 * 109.47111 * 59.99900 * 14 13 12 32 32 H 1.09000 * 110.51574 * 237.20075 * 17 15 14 33 33 H 1.09005 * 110.52223 * 359.79769 * 17 15 14 34 34 H 0.97004 * 125.55417 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6526 0.7002 6 1 3.5479 1.4401 0.7000 7 6 2.0104 -1.2020 -0.0005 8 1 1.4704 -2.1373 -0.0014 9 16 3.7724 -1.2020 -0.0012 10 6 4.0867 -2.9844 -0.0025 11 6 5.5959 -3.2362 -0.0026 12 6 5.8616 -4.7429 -0.0031 13 7 7.3106 -4.9846 -0.0026 14 6 7.6042 -6.4240 -0.0036 15 6 9.1196 -6.6354 -0.0024 16 1 9.5625 -6.2183 0.9020 17 6 9.4572 -8.1335 -0.1292 18 8 10.2102 -8.2212 -1.3735 19 6 10.3180 -7.0034 -1.9163 20 8 10.9010 -6.7927 -2.9614 21 7 9.7244 -6.0373 -1.2024 22 1 -0.4850 0.8400 0.0004 23 1 3.6435 -3.4309 -0.8927 24 1 3.6441 -3.4321 0.8873 25 1 6.0387 -2.7898 0.8877 26 1 6.0388 -2.7885 -0.8922 27 1 5.4187 -5.1897 -0.8933 28 1 5.4187 -5.1903 0.8867 29 1 7.7535 -4.5255 0.7792 30 1 7.1730 -6.8834 0.8858 31 1 7.1738 -6.8819 -0.8942 32 1 10.0692 -8.4596 0.7117 33 1 8.5449 -8.7270 -0.1895 34 1 9.6990 -5.0966 -1.4378 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380335149.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:55 Heat of formation + Delta-G solvation = -115.416648 kcal Electronic energy + Delta-G solvation = -16497.615976 eV Core-core repulsion = 13555.171409 eV Total energy + Delta-G solvation = -2942.444567 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 260.098 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.55068 -38.55676 -37.84296 -35.87555 -34.69257 -33.62659 -30.91845 -28.05176 -27.37279 -24.89934 -23.30628 -22.93549 -22.27573 -19.61961 -19.11114 -18.13462 -17.71978 -17.11489 -16.93553 -16.38589 -16.05636 -15.66233 -15.30995 -15.09605 -14.91164 -14.73710 -14.47454 -13.88119 -13.52626 -13.31212 -13.06875 -13.02080 -12.76250 -12.49268 -12.02147 -11.88906 -11.75279 -11.70826 -11.56942 -11.16931 -10.56575 -10.31834 -9.39459 -8.99110 -8.52745 -6.23818 1.13034 1.32345 1.47411 1.64411 1.75117 1.79036 2.24296 2.66588 2.69026 2.85537 2.93570 3.54025 3.74902 3.91543 4.02157 4.23565 4.30615 4.31530 4.46194 4.49647 4.60519 4.72582 4.76452 4.85158 4.93126 5.20876 5.29932 5.68807 5.86822 5.95046 6.09262 6.28776 6.48341 6.91552 7.07708 8.60407 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.051118 B = 0.002874 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.619181 B = 9741.552035 C =10007.847066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.036 3.964 3 Si 0.927 3.073 4 H -0.263 1.263 5 H -0.263 1.263 6 H -0.227 1.227 7 C -0.523 4.523 8 H 0.050 0.950 9 S -0.222 6.222 10 C -0.071 4.071 11 C -0.087 4.087 12 C 0.077 3.923 13 N -0.695 5.695 14 C 0.049 3.951 15 C 0.100 3.900 16 H 0.134 0.866 17 C 0.040 3.960 18 O -0.349 6.349 19 C 0.639 3.361 20 O -0.587 6.587 21 N -0.706 5.706 22 H 0.277 0.723 23 H 0.061 0.939 24 H 0.067 0.933 25 H 0.074 0.926 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.043 0.957 29 H 0.353 0.647 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.141 0.859 33 H 0.127 0.873 34 H 0.442 0.558 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.210 -14.925 6.106 25.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.168 4.168 3 Si 0.748 3.252 4 H -0.188 1.188 5 H -0.188 1.188 6 H -0.150 1.150 7 C -0.670 4.670 8 H 0.068 0.932 9 S 0.006 5.994 10 C -0.220 4.220 11 C -0.126 4.126 12 C -0.054 4.054 13 N -0.327 5.327 14 C -0.081 4.081 15 C -0.005 4.005 16 H 0.152 0.848 17 C -0.034 4.034 18 O -0.259 6.259 19 C 0.392 3.608 20 O -0.476 6.476 21 N -0.377 5.377 22 H 0.086 0.914 23 H 0.080 0.920 24 H 0.086 0.914 25 H 0.093 0.907 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.061 0.939 29 H 0.172 0.828 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.159 0.841 33 H 0.145 0.855 34 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges 20.187 -14.191 4.885 25.154 hybrid contribution -1.838 -0.037 0.571 1.925 sum 18.349 -14.228 5.455 23.852 Atomic orbital electron populations 1.70040 1.07710 1.29133 1.49304 1.25810 0.95424 1.02854 0.92759 0.85697 0.80817 0.78553 0.80167 1.18791 1.18802 1.14999 1.22360 0.90245 0.96182 1.58242 0.93194 1.83852 1.07350 1.10636 1.97560 1.23097 1.00696 0.94798 1.03405 1.21190 0.91280 0.96753 1.03363 1.21759 0.88207 0.94438 1.01030 1.60278 1.10292 1.11106 1.51041 1.22424 0.93643 0.89249 1.02774 1.22664 0.94390 0.93321 0.90124 0.84827 1.24814 0.98679 0.95623 0.84277 1.87238 1.71000 1.27965 1.39674 1.18735 0.78509 0.80524 0.83066 1.91030 1.49627 1.82776 1.24213 1.45992 1.56102 1.11062 1.24568 0.91407 0.92016 0.91443 0.90719 0.91261 0.91549 0.93861 0.82794 0.90577 0.91262 0.84127 0.85515 0.71367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.67 13.97 21.65 0.30 -56.37 16 2 C 0.04 2.11 5.50 84.86 0.47 2.57 16 3 Si 0.93 43.70 27.74 68.60 1.90 45.60 16 4 H -0.26 -12.12 7.11 99.48 0.71 -11.42 16 5 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 6 H -0.23 -10.19 6.74 99.48 0.67 -9.52 16 7 C -0.52 -30.51 10.04 67.95 0.68 -29.82 16 8 H 0.05 3.17 8.03 -2.91 -0.02 3.15 16 9 S -0.22 -10.38 19.41 -56.49 -1.10 -11.47 16 10 C -0.07 -2.52 5.67 71.98 0.41 -2.11 16 11 C -0.09 -2.17 5.48 30.59 0.17 -2.00 16 12 C 0.08 1.36 5.69 86.30 0.49 1.85 16 13 N -0.69 -8.49 6.38 -513.88 -3.28 -11.77 16 14 C 0.05 0.37 5.21 86.30 0.45 0.82 16 15 C 0.10 0.58 3.97 45.25 0.18 0.76 16 16 H 0.13 0.05 8.14 -2.39 -0.02 0.03 16 17 C 0.04 0.20 7.88 72.35 0.57 0.77 16 18 O -0.35 -6.23 11.09 -47.28 -0.52 -6.75 16 19 C 0.64 14.39 9.16 129.91 1.19 15.58 16 20 O -0.59 -19.46 18.04 19.65 0.35 -19.10 16 21 N -0.71 -9.93 5.93 -569.86 -3.38 -13.30 16 22 H 0.28 15.62 8.31 -92.71 -0.77 14.85 16 23 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 24 H 0.07 2.38 8.14 -2.40 -0.02 2.36 16 25 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 26 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.35 3.21 8.73 -89.69 -0.78 2.43 16 30 H 0.08 0.26 8.14 -2.39 -0.02 0.25 16 31 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.14 -0.16 8.14 -2.39 -0.02 -0.18 16 33 H 0.13 0.17 7.73 -2.38 -0.02 0.15 16 34 H 0.44 6.19 8.96 -92.71 -0.83 5.36 16 Total: -1.00 -78.17 305.29 -1.65 -79.82 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -0.54 Total: 4.93 kcal Atomic # 6 Polarization: -16.19 SS G_CDS: 4.60 Total: -11.58 kcal Atomic # 7 Polarization: -75.09 SS G_CDS: -6.36 Total: -81.45 kcal Atomic # 8 Polarization: -25.68 SS G_CDS: -0.17 Total: -25.85 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 1.90 Total: 45.60 kcal Atomic # 16 Polarization: -10.38 SS G_CDS: -1.10 Total: -11.47 kcal Total: -78.17 -1.65 -79.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380335149.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.595 kcal (2) G-P(sol) polarization free energy of solvation -78.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds