Wall clock time and date at job start Mon Mar 30 2020 04:52:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31515 * 1
3 3 Si 1.86794 * 120.00021 * 2 1
4 4 H 1.48512 * 109.46978 * 179.97438 * 3 2 1
5 5 H 1.48498 * 109.47258 * 299.99153 * 3 2 1
6 6 H 1.48497 * 109.47726 * 59.99877 * 3 2 1
7 7 C 1.37875 * 119.99613 * 179.97438 * 2 1 3
8 8 H 1.08005 * 120.00099 * 180.02562 * 7 2 1
9 9 C 1.50704 * 120.00278 * 0.02562 * 7 2 1
10 10 C 1.52996 * 109.47058 * 180.02562 * 9 7 2
11 11 C 1.53002 * 109.46865 * 179.97438 * 10 9 7
12 12 C 1.53006 * 109.46983 * 179.97438 * 11 10 9
13 13 S 1.81400 * 109.46902 * 180.02562 * 12 11 10
14 14 O 1.42095 * 109.47202 * 296.39091 * 13 12 11
15 15 C 1.81399 * 102.99767 * 180.02562 * 13 12 11
16 16 C 1.53179 * 109.54478 * 304.82152 * 15 13 12
17 17 C 1.53101 * 109.15898 * 183.24182 * 16 15 13
18 18 O 1.42905 * 109.48696 * 57.47592 * 17 16 15
19 19 C 1.42904 * 114.09782 * 298.88601 * 18 17 16
20 20 C 1.53099 * 109.41065 * 61.15821 * 19 18 17
21 21 H 0.97004 * 119.99658 * 0.02562 * 1 2 3
22 22 H 1.08998 * 109.46764 * 59.99939 * 9 7 2
23 23 H 1.08998 * 109.46788 * 299.99824 * 9 7 2
24 24 H 1.08999 * 109.47401 * 59.99716 * 10 9 7
25 25 H 1.08998 * 109.47098 * 299.99537 * 10 9 7
26 26 H 1.09007 * 109.46817 * 60.00179 * 11 10 9
27 27 H 1.08992 * 109.47333 * 300.00026 * 11 10 9
28 28 H 1.08999 * 109.47054 * 59.99990 * 12 11 10
29 29 H 1.09005 * 109.47135 * 300.00195 * 12 11 10
30 30 H 1.08999 * 109.54511 * 64.99922 * 15 13 12
31 31 H 1.08996 * 109.52232 * 303.05806 * 16 15 13
32 32 H 1.08999 * 109.52226 * 63.24849 * 16 15 13
33 33 H 1.09002 * 109.40911 * 297.49673 * 17 16 15
34 34 H 1.08996 * 109.49863 * 177.51201 * 17 16 15
35 35 H 1.08997 * 109.48123 * 301.17792 * 19 18 17
36 36 H 1.08998 * 109.49387 * 181.14551 * 19 18 17
37 37 H 1.09005 * 109.51804 * 182.48297 * 20 19 18
38 38 H 1.09004 * 109.57057 * 62.33193 * 20 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 3.7092 1.3463 0.0006
5 1 1.8906 2.3963 -1.2126
6 1 1.8905 2.3965 1.2124
7 6 2.0045 -1.1941 0.0005
8 1 3.0845 -1.1942 0.0010
9 6 1.2509 -2.4992 0.0005
10 6 2.2451 -3.6621 0.0018
11 6 1.4800 -4.9871 0.0025
12 6 2.4743 -6.1501 0.0031
13 16 1.5672 -7.7210 0.0031
14 8 0.8142 -7.8331 1.2029
15 6 2.8938 -8.9582 0.0047
16 6 3.8317 -8.7054 -1.1797
17 6 4.9003 -9.8011 -1.2173
18 8 4.2688 -11.0799 -1.3077
19 6 3.4176 -11.3898 -0.2024
20 6 2.2882 -10.3591 -0.1254
21 1 -0.4850 0.8401 -0.0004
22 1 0.6246 -2.5571 -0.8897
23 1 0.6240 -2.5567 0.8903
24 1 2.8711 -3.6040 0.8922
25 1 2.8724 -3.6048 -0.8877
26 1 0.8538 -5.0454 -0.8878
27 1 0.8530 -5.0442 0.8921
28 1 3.1009 -6.0919 0.8931
29 1 3.1010 -6.0928 -0.8869
30 1 3.4559 -8.8890 0.9360
31 1 3.2599 -8.7240 -2.1075
32 1 4.3096 -7.7325 -1.0648
33 1 5.4987 -9.7548 -0.3074
34 1 5.5443 -9.6517 -2.0838
35 1 3.9967 -11.3642 0.7206
36 1 2.9933 -12.3846 -0.3379
37 1 1.6632 -10.5679 0.7429
38 1 1.6833 -10.4119 -1.0307
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000385222734.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:52:33
Heat of formation + Delta-G solvation = -116.677854 kcal
Electronic energy + Delta-G solvation = -17222.436609 eV
Core-core repulsion = 14383.477696 eV
Total energy + Delta-G solvation = -2838.958913 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 260.123 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-39.44389 -35.69843 -35.19301 -34.00661 -32.66716 -31.46410 -29.49628 -25.71156
-25.19103 -23.87384 -22.00039 -20.75808 -20.11604 -17.57943 -16.64521 -16.34160
-16.20433 -15.66465 -15.17926 -15.01940 -14.80110 -14.41525 -14.21232 -13.90962
-13.12036 -12.78427 -12.58225 -12.18485 -11.98796 -11.83947 -11.77653 -11.66579
-11.17883 -11.01817 -10.87972 -10.66165 -10.60764 -10.50095 -10.29096 -9.68909
-9.68512 -9.22704 -8.98177 -8.34455 -8.18840 -5.99151 -4.01600 1.43107
2.58261 3.30866 3.38221 3.42190 3.56724 3.71973 4.31595 4.37954
4.46269 4.66682 4.78854 4.89555 5.08216 5.13283 5.14992 5.21300
5.34039 5.35027 5.36533 5.42507 5.61313 5.67362 5.78944 5.83353
5.96968 6.16285 6.40491 6.71767 6.85910 6.87643 7.12769 7.69022
7.83869 8.01332 8.43877 9.05903 9.62395 11.12221
Molecular weight = 260.12amu
Principal moments of inertia in cm(-1)
A = 0.044628 B = 0.003279 C = 0.003104
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 627.257992 B = 8537.880610 C = 9019.560677
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.895 5.895
2 C 0.055 3.945
3 Si 0.891 3.109
4 H -0.273 1.273
5 H -0.283 1.283
6 H -0.284 1.284
7 C -0.520 4.520
8 H 0.055 0.945
9 C 0.018 3.982
10 C -0.104 4.104
11 C -0.101 4.101
12 C -0.436 4.436
13 S 1.235 4.765
14 O -0.847 6.847
15 C -0.419 4.419
16 C -0.132 4.132
17 C 0.063 3.937
18 O -0.382 6.382
19 C 0.066 3.934
20 C -0.130 4.130
21 H 0.260 0.740
22 H 0.018 0.982
23 H 0.015 0.985
24 H 0.044 0.956
25 H 0.050 0.950
26 H 0.069 0.931
27 H 0.061 0.939
28 H 0.082 0.918
29 H 0.116 0.884
30 H 0.087 0.913
31 H 0.089 0.911
32 H 0.082 0.918
33 H 0.047 0.953
34 H 0.098 0.902
35 H 0.047 0.953
36 H 0.096 0.904
37 H 0.076 0.924
38 H 0.085 0.915
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.038 -22.143 -5.161 23.801
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.535 5.535
2 C -0.146 4.146
3 Si 0.719 3.281
4 H -0.198 1.198
5 H -0.210 1.210
6 H -0.210 1.210
7 C -0.559 4.559
8 H 0.073 0.927
9 C -0.019 4.019
10 C -0.143 4.143
11 C -0.140 4.140
12 C -0.574 4.574
13 S 1.436 4.564
14 O -0.843 6.843
15 C -0.535 4.535
16 C -0.170 4.170
17 C -0.015 4.015
18 O -0.300 6.300
19 C -0.012 4.012
20 C -0.168 4.168
21 H 0.069 0.931
22 H 0.036 0.964
23 H 0.033 0.967
24 H 0.063 0.937
25 H 0.069 0.931
26 H 0.088 0.912
27 H 0.080 0.920
28 H 0.101 0.899
29 H 0.134 0.866
30 H 0.106 0.894
31 H 0.108 0.892
32 H 0.101 0.899
33 H 0.065 0.935
34 H 0.116 0.884
35 H 0.066 0.934
36 H 0.114 0.886
37 H 0.095 0.905
38 H 0.104 0.896
Dipole moment (debyes) X Y Z Total
from point charges 5.916 -22.321 -5.270 23.685
hybrid contribution 1.818 1.465 2.249 3.242
sum 7.734 -20.856 -3.020 22.448
Atomic orbital electron populations
1.69979 1.06045 1.26462 1.50976 1.25039 0.94859 0.99269 0.95395
0.86547 0.80082 0.83846 0.77586 1.19787 1.20963 1.21048 1.21306
0.93033 0.91150 1.50380 0.92719 1.19137 0.94101 0.91395 0.97314
1.21622 0.99002 0.93389 1.00277 1.21313 0.96780 0.93547 1.02328
1.27674 1.09321 1.13191 1.07240 1.70511 0.87114 0.86260 1.12496
1.93115 1.56252 1.83647 1.51238 1.27605 1.13046 1.09513 1.03343
1.21942 0.97459 1.00054 0.97558 1.22575 0.94006 0.82853 1.02037
1.87926 1.62446 1.35126 1.44543 1.22531 0.90896 0.98185 0.89567
1.21835 0.98777 0.92535 1.03685 0.93056 0.96390 0.96671 0.93675
0.93112 0.91212 0.92028 0.89946 0.86567 0.89395 0.89213 0.89921
0.93480 0.88408 0.93441 0.88563 0.90509 0.89636
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -27.25 13.29 55.43 0.74 -26.52 16
2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16
3 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16
4 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16
5 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16
6 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16
7 C -0.52 -14.95 9.11 -34.44 -0.31 -15.27 16
8 H 0.05 1.53 7.74 -52.48 -0.41 1.12 16
9 C 0.02 0.46 4.97 -27.88 -0.14 0.32 16
10 C -0.10 -2.14 5.15 -26.73 -0.14 -2.27 16
11 C -0.10 -1.69 5.22 -26.73 -0.14 -1.83 16
12 C -0.44 -5.46 5.34 37.16 0.20 -5.26 16
13 S 1.24 13.46 12.67 -107.50 -1.36 12.10 16
14 O -0.85 -14.92 18.14 -35.23 -0.64 -15.56 16
15 C -0.42 -3.74 2.80 -26.55 -0.07 -3.81 16
16 C -0.13 -0.92 5.09 -26.59 -0.14 -1.06 16
17 C 0.06 0.47 6.84 37.21 0.25 0.73 16
18 O -0.38 -3.54 10.77 -35.23 -0.38 -3.92 16
19 C 0.07 0.52 6.84 37.21 0.25 0.78 16
20 C -0.13 -1.06 5.43 -26.59 -0.14 -1.21 16
21 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16
22 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16
23 H 0.01 0.42 8.14 -51.93 -0.42 0.00 16
24 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16
25 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16
26 H 0.07 1.04 8.14 -51.92 -0.42 0.62 16
27 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16
28 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16
29 H 0.12 1.11 6.99 -51.92 -0.36 0.75 16
30 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16
31 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16
32 H 0.08 0.52 6.72 -51.93 -0.35 0.17 16
33 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16
34 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16
35 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16
36 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16
37 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16
38 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16
LS Contribution 319.88 15.07 4.82 4.82
Total: -1.00 -36.33 319.88 -8.91 -45.25
By element:
Atomic # 1 Polarization: 0.98 SS G_CDS: -6.59 Total: -5.61 kcal
Atomic # 6 Polarization: -26.89 SS G_CDS: -0.47 Total: -27.37 kcal
Atomic # 7 Polarization: -27.25 SS G_CDS: 0.74 Total: -26.52 kcal
Atomic # 8 Polarization: -18.46 SS G_CDS: -1.02 Total: -19.48 kcal
Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal
Atomic # 16 Polarization: 13.46 SS G_CDS: -1.36 Total: 12.10 kcal
Total LS contribution 4.82 Total: 4.82 kcal
Total: -36.33 -8.91 -45.25 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000385222734.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -71.430 kcal
(2) G-P(sol) polarization free energy of solvation -36.335 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.765 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.913 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.248 kcal
(6) G-S(sol) free energy of system = (1) + (5) -116.678 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds