Wall clock time and date at job start Mon Mar 30 2020 04:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00021 * 2 1 4 4 H 1.48512 * 109.46978 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47258 * 299.99153 * 3 2 1 6 6 H 1.48497 * 109.47726 * 59.99877 * 3 2 1 7 7 C 1.37875 * 119.99613 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00099 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00278 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47058 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46865 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.46983 * 179.97438 * 11 10 9 13 13 S 1.81400 * 109.46902 * 180.02562 * 12 11 10 14 14 O 1.42095 * 109.47202 * 296.39091 * 13 12 11 15 15 C 1.81399 * 102.99767 * 180.02562 * 13 12 11 16 16 C 1.53179 * 109.54478 * 304.82152 * 15 13 12 17 17 C 1.53101 * 109.15898 * 183.24182 * 16 15 13 18 18 O 1.42905 * 109.48696 * 57.47592 * 17 16 15 19 19 C 1.42904 * 114.09782 * 298.88601 * 18 17 16 20 20 C 1.53099 * 109.41065 * 61.15821 * 19 18 17 21 21 H 0.97004 * 119.99658 * 0.02562 * 1 2 3 22 22 H 1.08998 * 109.46764 * 59.99939 * 9 7 2 23 23 H 1.08998 * 109.46788 * 299.99824 * 9 7 2 24 24 H 1.08999 * 109.47401 * 59.99716 * 10 9 7 25 25 H 1.08998 * 109.47098 * 299.99537 * 10 9 7 26 26 H 1.09007 * 109.46817 * 60.00179 * 11 10 9 27 27 H 1.08992 * 109.47333 * 300.00026 * 11 10 9 28 28 H 1.08999 * 109.47054 * 59.99990 * 12 11 10 29 29 H 1.09005 * 109.47135 * 300.00195 * 12 11 10 30 30 H 1.08999 * 109.54511 * 64.99922 * 15 13 12 31 31 H 1.08996 * 109.52232 * 303.05806 * 16 15 13 32 32 H 1.08999 * 109.52226 * 63.24849 * 16 15 13 33 33 H 1.09002 * 109.40911 * 297.49673 * 17 16 15 34 34 H 1.08996 * 109.49863 * 177.51201 * 17 16 15 35 35 H 1.08997 * 109.48123 * 301.17792 * 19 18 17 36 36 H 1.08998 * 109.49387 * 181.14551 * 19 18 17 37 37 H 1.09005 * 109.51804 * 182.48297 * 20 19 18 38 38 H 1.09004 * 109.57057 * 62.33193 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0018 11 6 1.4800 -4.9871 0.0025 12 6 2.4743 -6.1501 0.0031 13 16 1.5672 -7.7210 0.0031 14 8 0.8142 -7.8331 1.2029 15 6 2.8938 -8.9582 0.0047 16 6 3.8317 -8.7054 -1.1797 17 6 4.9003 -9.8011 -1.2173 18 8 4.2688 -11.0799 -1.3077 19 6 3.4176 -11.3898 -0.2024 20 6 2.2882 -10.3591 -0.1254 21 1 -0.4850 0.8401 -0.0004 22 1 0.6246 -2.5571 -0.8897 23 1 0.6240 -2.5567 0.8903 24 1 2.8711 -3.6040 0.8922 25 1 2.8724 -3.6048 -0.8877 26 1 0.8538 -5.0454 -0.8878 27 1 0.8530 -5.0442 0.8921 28 1 3.1009 -6.0919 0.8931 29 1 3.1010 -6.0928 -0.8869 30 1 3.4559 -8.8890 0.9360 31 1 3.2599 -8.7240 -2.1075 32 1 4.3096 -7.7325 -1.0648 33 1 5.4987 -9.7548 -0.3074 34 1 5.5443 -9.6517 -2.0838 35 1 3.9967 -11.3642 0.7206 36 1 2.9933 -12.3846 -0.3379 37 1 1.6632 -10.5679 0.7429 38 1 1.6833 -10.4119 -1.0307 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385222734.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:33 Heat of formation + Delta-G solvation = -116.677854 kcal Electronic energy + Delta-G solvation = -17222.436609 eV Core-core repulsion = 14383.477696 eV Total energy + Delta-G solvation = -2838.958913 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.123 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.44389 -35.69843 -35.19301 -34.00661 -32.66716 -31.46410 -29.49628 -25.71156 -25.19103 -23.87384 -22.00039 -20.75808 -20.11604 -17.57943 -16.64521 -16.34160 -16.20433 -15.66465 -15.17926 -15.01940 -14.80110 -14.41525 -14.21232 -13.90962 -13.12036 -12.78427 -12.58225 -12.18485 -11.98796 -11.83947 -11.77653 -11.66579 -11.17883 -11.01817 -10.87972 -10.66165 -10.60764 -10.50095 -10.29096 -9.68909 -9.68512 -9.22704 -8.98177 -8.34455 -8.18840 -5.99151 -4.01600 1.43107 2.58261 3.30866 3.38221 3.42190 3.56724 3.71973 4.31595 4.37954 4.46269 4.66682 4.78854 4.89555 5.08216 5.13283 5.14992 5.21300 5.34039 5.35027 5.36533 5.42507 5.61313 5.67362 5.78944 5.83353 5.96968 6.16285 6.40491 6.71767 6.85910 6.87643 7.12769 7.69022 7.83869 8.01332 8.43877 9.05903 9.62395 11.12221 Molecular weight = 260.12amu Principal moments of inertia in cm(-1) A = 0.044628 B = 0.003279 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.257992 B = 8537.880610 C = 9019.560677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.055 0.945 9 C 0.018 3.982 10 C -0.104 4.104 11 C -0.101 4.101 12 C -0.436 4.436 13 S 1.235 4.765 14 O -0.847 6.847 15 C -0.419 4.419 16 C -0.132 4.132 17 C 0.063 3.937 18 O -0.382 6.382 19 C 0.066 3.934 20 C -0.130 4.130 21 H 0.260 0.740 22 H 0.018 0.982 23 H 0.015 0.985 24 H 0.044 0.956 25 H 0.050 0.950 26 H 0.069 0.931 27 H 0.061 0.939 28 H 0.082 0.918 29 H 0.116 0.884 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.047 0.953 34 H 0.098 0.902 35 H 0.047 0.953 36 H 0.096 0.904 37 H 0.076 0.924 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.038 -22.143 -5.161 23.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.073 0.927 9 C -0.019 4.019 10 C -0.143 4.143 11 C -0.140 4.140 12 C -0.574 4.574 13 S 1.436 4.564 14 O -0.843 6.843 15 C -0.535 4.535 16 C -0.170 4.170 17 C -0.015 4.015 18 O -0.300 6.300 19 C -0.012 4.012 20 C -0.168 4.168 21 H 0.069 0.931 22 H 0.036 0.964 23 H 0.033 0.967 24 H 0.063 0.937 25 H 0.069 0.931 26 H 0.088 0.912 27 H 0.080 0.920 28 H 0.101 0.899 29 H 0.134 0.866 30 H 0.106 0.894 31 H 0.108 0.892 32 H 0.101 0.899 33 H 0.065 0.935 34 H 0.116 0.884 35 H 0.066 0.934 36 H 0.114 0.886 37 H 0.095 0.905 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 5.916 -22.321 -5.270 23.685 hybrid contribution 1.818 1.465 2.249 3.242 sum 7.734 -20.856 -3.020 22.448 Atomic orbital electron populations 1.69979 1.06045 1.26462 1.50976 1.25039 0.94859 0.99269 0.95395 0.86547 0.80082 0.83846 0.77586 1.19787 1.20963 1.21048 1.21306 0.93033 0.91150 1.50380 0.92719 1.19137 0.94101 0.91395 0.97314 1.21622 0.99002 0.93389 1.00277 1.21313 0.96780 0.93547 1.02328 1.27674 1.09321 1.13191 1.07240 1.70511 0.87114 0.86260 1.12496 1.93115 1.56252 1.83647 1.51238 1.27605 1.13046 1.09513 1.03343 1.21942 0.97459 1.00054 0.97558 1.22575 0.94006 0.82853 1.02037 1.87926 1.62446 1.35126 1.44543 1.22531 0.90896 0.98185 0.89567 1.21835 0.98777 0.92535 1.03685 0.93056 0.96390 0.96671 0.93675 0.93112 0.91212 0.92028 0.89946 0.86567 0.89395 0.89213 0.89921 0.93480 0.88408 0.93441 0.88563 0.90509 0.89636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.25 13.29 55.43 0.74 -26.52 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 4 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.52 -14.95 9.11 -34.44 -0.31 -15.27 16 8 H 0.05 1.53 7.74 -52.48 -0.41 1.12 16 9 C 0.02 0.46 4.97 -27.88 -0.14 0.32 16 10 C -0.10 -2.14 5.15 -26.73 -0.14 -2.27 16 11 C -0.10 -1.69 5.22 -26.73 -0.14 -1.83 16 12 C -0.44 -5.46 5.34 37.16 0.20 -5.26 16 13 S 1.24 13.46 12.67 -107.50 -1.36 12.10 16 14 O -0.85 -14.92 18.14 -35.23 -0.64 -15.56 16 15 C -0.42 -3.74 2.80 -26.55 -0.07 -3.81 16 16 C -0.13 -0.92 5.09 -26.59 -0.14 -1.06 16 17 C 0.06 0.47 6.84 37.21 0.25 0.73 16 18 O -0.38 -3.54 10.77 -35.23 -0.38 -3.92 16 19 C 0.07 0.52 6.84 37.21 0.25 0.78 16 20 C -0.13 -1.06 5.43 -26.59 -0.14 -1.21 16 21 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 22 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.01 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 25 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.07 1.04 8.14 -51.92 -0.42 0.62 16 27 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.12 1.11 6.99 -51.92 -0.36 0.75 16 30 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.08 0.52 6.72 -51.93 -0.35 0.17 16 33 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 319.88 15.07 4.82 4.82 Total: -1.00 -36.33 319.88 -8.91 -45.25 By element: Atomic # 1 Polarization: 0.98 SS G_CDS: -6.59 Total: -5.61 kcal Atomic # 6 Polarization: -26.89 SS G_CDS: -0.47 Total: -27.37 kcal Atomic # 7 Polarization: -27.25 SS G_CDS: 0.74 Total: -26.52 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: -1.02 Total: -19.48 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 16 Polarization: 13.46 SS G_CDS: -1.36 Total: 12.10 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -36.33 -8.91 -45.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385222734.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.430 kcal (2) G-P(sol) polarization free energy of solvation -36.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds