Wall clock time and date at job start Mon Mar 30 2020 04:52:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31515 * 1
3 3 Si 1.86794 * 120.00021 * 2 1
4 4 H 1.48512 * 109.46978 * 179.97438 * 3 2 1
5 5 H 1.48498 * 109.47258 * 299.99153 * 3 2 1
6 6 H 1.48497 * 109.47726 * 59.99877 * 3 2 1
7 7 C 1.37875 * 119.99613 * 179.97438 * 2 1 3
8 8 H 1.08005 * 120.00099 * 180.02562 * 7 2 1
9 9 C 1.50704 * 120.00278 * 0.02562 * 7 2 1
10 10 C 1.52996 * 109.47058 * 180.02562 * 9 7 2
11 11 C 1.53002 * 109.46865 * 179.97438 * 10 9 7
12 12 C 1.53006 * 109.46983 * 179.97438 * 11 10 9
13 13 S 1.81400 * 109.46902 * 180.02562 * 12 11 10
14 14 O 1.42095 * 109.47202 * 296.39091 * 13 12 11
15 15 C 1.81399 * 102.99767 * 180.02562 * 13 12 11
16 16 C 1.53179 * 109.54478 * 304.82152 * 15 13 12
17 17 C 1.53101 * 109.15898 * 183.24182 * 16 15 13
18 18 O 1.42905 * 109.48696 * 57.47592 * 17 16 15
19 19 C 1.42904 * 114.09782 * 298.88601 * 18 17 16
20 20 C 1.53099 * 109.41065 * 61.15821 * 19 18 17
21 21 H 0.97004 * 119.99658 * 0.02562 * 1 2 3
22 22 H 1.08998 * 109.46764 * 59.99939 * 9 7 2
23 23 H 1.08998 * 109.46788 * 299.99824 * 9 7 2
24 24 H 1.08999 * 109.47401 * 59.99716 * 10 9 7
25 25 H 1.08998 * 109.47098 * 299.99537 * 10 9 7
26 26 H 1.09007 * 109.46817 * 60.00179 * 11 10 9
27 27 H 1.08992 * 109.47333 * 300.00026 * 11 10 9
28 28 H 1.08999 * 109.47054 * 59.99990 * 12 11 10
29 29 H 1.09005 * 109.47135 * 300.00195 * 12 11 10
30 30 H 1.08999 * 109.54511 * 64.99922 * 15 13 12
31 31 H 1.08996 * 109.52232 * 303.05806 * 16 15 13
32 32 H 1.08999 * 109.52226 * 63.24849 * 16 15 13
33 33 H 1.09002 * 109.40911 * 297.49673 * 17 16 15
34 34 H 1.08996 * 109.49863 * 177.51201 * 17 16 15
35 35 H 1.08997 * 109.48123 * 301.17792 * 19 18 17
36 36 H 1.08998 * 109.49387 * 181.14551 * 19 18 17
37 37 H 1.09005 * 109.51804 * 182.48297 * 20 19 18
38 38 H 1.09004 * 109.57057 * 62.33193 * 20 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 3.7092 1.3463 0.0006
5 1 1.8906 2.3963 -1.2126
6 1 1.8905 2.3965 1.2124
7 6 2.0045 -1.1941 0.0005
8 1 3.0845 -1.1942 0.0010
9 6 1.2509 -2.4992 0.0005
10 6 2.2451 -3.6621 0.0018
11 6 1.4800 -4.9871 0.0025
12 6 2.4743 -6.1501 0.0031
13 16 1.5672 -7.7210 0.0031
14 8 0.8142 -7.8331 1.2029
15 6 2.8938 -8.9582 0.0047
16 6 3.8317 -8.7054 -1.1797
17 6 4.9003 -9.8011 -1.2173
18 8 4.2688 -11.0799 -1.3077
19 6 3.4176 -11.3898 -0.2024
20 6 2.2882 -10.3591 -0.1254
21 1 -0.4850 0.8401 -0.0004
22 1 0.6246 -2.5571 -0.8897
23 1 0.6240 -2.5567 0.8903
24 1 2.8711 -3.6040 0.8922
25 1 2.8724 -3.6048 -0.8877
26 1 0.8538 -5.0454 -0.8878
27 1 0.8530 -5.0442 0.8921
28 1 3.1009 -6.0919 0.8931
29 1 3.1010 -6.0928 -0.8869
30 1 3.4559 -8.8890 0.9360
31 1 3.2599 -8.7240 -2.1075
32 1 4.3096 -7.7325 -1.0648
33 1 5.4987 -9.7548 -0.3074
34 1 5.5443 -9.6517 -2.0838
35 1 3.9967 -11.3642 0.7206
36 1 2.9933 -12.3846 -0.3379
37 1 1.6632 -10.5679 0.7429
38 1 1.6833 -10.4119 -1.0307
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000385222734.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:52:33
Heat of formation + Delta-G solvation = -142.212767 kcal
Electronic energy + Delta-G solvation = -17223.543886 eV
Core-core repulsion = 14383.477696 eV
Total energy + Delta-G solvation = -2840.066190 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 260.123 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-40.06242 -36.93777 -36.80092 -34.72903 -34.61645 -32.10971 -31.21492 -27.22554
-26.17339 -24.61634 -23.58343 -21.86784 -21.35928 -18.53821 -18.39647 -17.37462
-16.95303 -16.68173 -16.55524 -16.18239 -15.77851 -15.67311 -15.16823 -14.68175
-14.50400 -14.42850 -13.80019 -13.52189 -13.26920 -13.17190 -12.86261 -12.69838
-12.40362 -12.33838 -12.27142 -12.15692 -11.79316 -11.64355 -11.42509 -11.34377
-11.22833 -10.91107 -10.57037 -10.28249 -9.18555 -8.20861 -6.32591 0.50983
1.39055 1.39700 1.52964 1.68350 2.40158 2.78212 3.00778 3.11942
3.63677 3.71372 3.91590 4.01641 4.08166 4.17993 4.32164 4.40621
4.53397 4.54690 4.57947 4.71789 4.79698 4.84003 4.85485 4.94019
5.05754 5.10273 5.11692 5.25122 5.27791 5.30979 5.52707 5.75370
5.85696 6.24235 6.27530 6.85309 7.36928 8.91240
Molecular weight = 260.12amu
Principal moments of inertia in cm(-1)
A = 0.044628 B = 0.003279 C = 0.003104
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 627.257992 B = 8537.880610 C = 9019.560677
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.935 5.935
2 C -0.004 4.004
3 Si 0.967 3.033
4 H -0.261 1.261
5 H -0.274 1.274
6 H -0.281 1.281
7 C -0.544 4.544
8 H 0.061 0.939
9 C 0.017 3.983
10 C -0.094 4.094
11 C -0.101 4.101
12 C -0.434 4.434
13 S 1.282 4.718
14 O -0.919 6.919
15 C -0.407 4.407
16 C -0.134 4.134
17 C 0.057 3.943
18 O -0.396 6.396
19 C 0.065 3.935
20 C -0.135 4.135
21 H 0.264 0.736
22 H 0.001 0.999
23 H -0.020 1.020
24 H 0.037 0.963
25 H 0.070 0.930
26 H 0.089 0.911
27 H 0.031 0.969
28 H 0.072 0.928
29 H 0.157 0.843
30 H 0.075 0.925
31 H 0.113 0.887
32 H 0.096 0.904
33 H 0.043 0.957
34 H 0.116 0.884
35 H 0.043 0.957
36 H 0.112 0.888
37 H 0.065 0.935
38 H 0.105 0.895
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.995 -22.600 -6.823 25.263
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.575 5.575
2 C -0.201 4.201
3 Si 0.791 3.209
4 H -0.185 1.185
5 H -0.200 1.200
6 H -0.207 1.207
7 C -0.582 4.582
8 H 0.079 0.921
9 C -0.020 4.020
10 C -0.133 4.133
11 C -0.139 4.139
12 C -0.572 4.572
13 S 1.486 4.514
14 O -0.915 6.915
15 C -0.526 4.526
16 C -0.172 4.172
17 C -0.020 4.020
18 O -0.315 6.315
19 C -0.012 4.012
20 C -0.173 4.173
21 H 0.072 0.928
22 H 0.019 0.981
23 H -0.002 1.002
24 H 0.056 0.944
25 H 0.089 0.911
26 H 0.107 0.893
27 H 0.050 0.950
28 H 0.091 0.909
29 H 0.174 0.826
30 H 0.093 0.907
31 H 0.131 0.869
32 H 0.114 0.886
33 H 0.061 0.939
34 H 0.134 0.866
35 H 0.061 0.939
36 H 0.130 0.870
37 H 0.084 0.916
38 H 0.124 0.876
Dipole moment (debyes) X Y Z Total
from point charges 7.865 -22.764 -6.926 25.060
hybrid contribution 1.243 1.528 2.752 3.384
sum 9.108 -21.236 -4.174 23.481
Atomic orbital electron populations
1.70116 1.07882 1.27733 1.51777 1.26038 0.95811 1.03545 0.94752
0.85369 0.79078 0.78602 0.77808 1.18454 1.19977 1.20700 1.21767
0.93598 0.92447 1.50381 0.92081 1.19092 0.94682 0.93476 0.94759
1.21454 0.97899 0.93104 1.00817 1.21199 0.97341 0.93455 1.01933
1.27634 1.08601 1.12173 1.08757 1.69678 0.86567 0.85266 1.09865
1.92999 1.60036 1.84825 1.53629 1.27471 1.12125 1.08865 1.04114
1.22077 0.97197 1.00617 0.97319 1.22742 0.94215 0.82287 1.02801
1.87913 1.62644 1.36038 1.44878 1.22598 0.90562 0.98815 0.89272
1.21926 0.99129 0.92044 1.04233 0.92760 0.98065 1.00195 0.94377
0.91106 0.89254 0.95042 0.90931 0.82563 0.90673 0.86862 0.88587
0.93873 0.86563 0.93860 0.86985 0.91623 0.87644
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -57.92 13.29 21.45 0.28 -57.63 16
2 C 0.00 -0.23 5.46 84.65 0.46 0.23 16
3 Si 0.97 44.64 29.54 68.60 2.03 46.66 16
4 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16
5 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16
6 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16
7 C -0.54 -31.49 9.11 25.60 0.23 -31.26 16
8 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16
9 C 0.02 0.92 4.97 29.85 0.15 1.07 16
10 C -0.09 -3.83 5.15 30.59 0.16 -3.68 16
11 C -0.10 -3.34 5.22 30.60 0.16 -3.18 16
12 C -0.43 -10.06 5.34 71.98 0.38 -9.68 16
13 S 1.28 26.50 12.67 -56.49 -0.72 25.79 16
14 O -0.92 -33.05 18.14 -148.98 -2.70 -35.75 16
15 C -0.41 -6.48 2.80 30.71 0.09 -6.39 16
16 C -0.13 -1.41 5.09 30.69 0.16 -1.25 16
17 C 0.06 0.69 6.84 72.02 0.49 1.18 16
18 O -0.40 -6.34 10.77 -148.98 -1.60 -7.94 16
19 C 0.07 0.91 6.84 72.02 0.49 1.40 16
20 C -0.13 -1.97 5.43 30.69 0.17 -1.81 16
21 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16
22 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16
23 H -0.02 -1.22 8.14 -2.39 -0.02 -1.24 16
24 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16
25 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16
26 H 0.09 2.58 8.14 -2.38 -0.02 2.56 16
27 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16
28 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16
29 H 0.16 2.35 6.99 -2.39 -0.02 2.33 16
30 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16
31 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16
32 H 0.10 0.79 6.72 -2.39 -0.02 0.78 16
33 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16
34 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16
35 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16
36 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16
37 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16
38 H 0.11 1.12 8.14 -2.38 -0.02 1.10 16
Total: -1.00 -80.65 319.88 1.23 -79.41
By element:
Atomic # 1 Polarization: 1.81 SS G_CDS: 1.00 Total: 2.82 kcal
Atomic # 6 Polarization: -56.30 SS G_CDS: 2.94 Total: -53.36 kcal
Atomic # 7 Polarization: -57.92 SS G_CDS: 0.28 Total: -57.63 kcal
Atomic # 8 Polarization: -39.38 SS G_CDS: -4.31 Total: -43.69 kcal
Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.66 kcal
Atomic # 16 Polarization: 26.50 SS G_CDS: -0.72 Total: 25.79 kcal
Total: -80.65 1.23 -79.41 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000385222734.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -62.800 kcal
(2) G-P(sol) polarization free energy of solvation -80.645 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.445 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.232 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.413 kcal
(6) G-S(sol) free energy of system = (1) + (5) -142.213 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.37 seconds