Wall clock time and date at job start Mon Mar 30 2020 04:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00021 * 2 1 4 4 H 1.48512 * 109.46978 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47258 * 299.99153 * 3 2 1 6 6 H 1.48497 * 109.47726 * 59.99877 * 3 2 1 7 7 C 1.37875 * 119.99613 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00099 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00278 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47058 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46865 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.46983 * 179.97438 * 11 10 9 13 13 S 1.81400 * 109.46902 * 180.02562 * 12 11 10 14 14 O 1.42095 * 109.47202 * 296.39091 * 13 12 11 15 15 C 1.81399 * 102.99767 * 180.02562 * 13 12 11 16 16 C 1.53179 * 109.54478 * 304.82152 * 15 13 12 17 17 C 1.53101 * 109.15898 * 183.24182 * 16 15 13 18 18 O 1.42905 * 109.48696 * 57.47592 * 17 16 15 19 19 C 1.42904 * 114.09782 * 298.88601 * 18 17 16 20 20 C 1.53099 * 109.41065 * 61.15821 * 19 18 17 21 21 H 0.97004 * 119.99658 * 0.02562 * 1 2 3 22 22 H 1.08998 * 109.46764 * 59.99939 * 9 7 2 23 23 H 1.08998 * 109.46788 * 299.99824 * 9 7 2 24 24 H 1.08999 * 109.47401 * 59.99716 * 10 9 7 25 25 H 1.08998 * 109.47098 * 299.99537 * 10 9 7 26 26 H 1.09007 * 109.46817 * 60.00179 * 11 10 9 27 27 H 1.08992 * 109.47333 * 300.00026 * 11 10 9 28 28 H 1.08999 * 109.47054 * 59.99990 * 12 11 10 29 29 H 1.09005 * 109.47135 * 300.00195 * 12 11 10 30 30 H 1.08999 * 109.54511 * 64.99922 * 15 13 12 31 31 H 1.08996 * 109.52232 * 303.05806 * 16 15 13 32 32 H 1.08999 * 109.52226 * 63.24849 * 16 15 13 33 33 H 1.09002 * 109.40911 * 297.49673 * 17 16 15 34 34 H 1.08996 * 109.49863 * 177.51201 * 17 16 15 35 35 H 1.08997 * 109.48123 * 301.17792 * 19 18 17 36 36 H 1.08998 * 109.49387 * 181.14551 * 19 18 17 37 37 H 1.09005 * 109.51804 * 182.48297 * 20 19 18 38 38 H 1.09004 * 109.57057 * 62.33193 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0018 11 6 1.4800 -4.9871 0.0025 12 6 2.4743 -6.1501 0.0031 13 16 1.5672 -7.7210 0.0031 14 8 0.8142 -7.8331 1.2029 15 6 2.8938 -8.9582 0.0047 16 6 3.8317 -8.7054 -1.1797 17 6 4.9003 -9.8011 -1.2173 18 8 4.2688 -11.0799 -1.3077 19 6 3.4176 -11.3898 -0.2024 20 6 2.2882 -10.3591 -0.1254 21 1 -0.4850 0.8401 -0.0004 22 1 0.6246 -2.5571 -0.8897 23 1 0.6240 -2.5567 0.8903 24 1 2.8711 -3.6040 0.8922 25 1 2.8724 -3.6048 -0.8877 26 1 0.8538 -5.0454 -0.8878 27 1 0.8530 -5.0442 0.8921 28 1 3.1009 -6.0919 0.8931 29 1 3.1010 -6.0928 -0.8869 30 1 3.4559 -8.8890 0.9360 31 1 3.2599 -8.7240 -2.1075 32 1 4.3096 -7.7325 -1.0648 33 1 5.4987 -9.7548 -0.3074 34 1 5.5443 -9.6517 -2.0838 35 1 3.9967 -11.3642 0.7206 36 1 2.9933 -12.3846 -0.3379 37 1 1.6632 -10.5679 0.7429 38 1 1.6833 -10.4119 -1.0307 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385222734.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:33 Heat of formation + Delta-G solvation = -142.212767 kcal Electronic energy + Delta-G solvation = -17223.543886 eV Core-core repulsion = 14383.477696 eV Total energy + Delta-G solvation = -2840.066190 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.123 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.06242 -36.93777 -36.80092 -34.72903 -34.61645 -32.10971 -31.21492 -27.22554 -26.17339 -24.61634 -23.58343 -21.86784 -21.35928 -18.53821 -18.39647 -17.37462 -16.95303 -16.68173 -16.55524 -16.18239 -15.77851 -15.67311 -15.16823 -14.68175 -14.50400 -14.42850 -13.80019 -13.52189 -13.26920 -13.17190 -12.86261 -12.69838 -12.40362 -12.33838 -12.27142 -12.15692 -11.79316 -11.64355 -11.42509 -11.34377 -11.22833 -10.91107 -10.57037 -10.28249 -9.18555 -8.20861 -6.32591 0.50983 1.39055 1.39700 1.52964 1.68350 2.40158 2.78212 3.00778 3.11942 3.63677 3.71372 3.91590 4.01641 4.08166 4.17993 4.32164 4.40621 4.53397 4.54690 4.57947 4.71789 4.79698 4.84003 4.85485 4.94019 5.05754 5.10273 5.11692 5.25122 5.27791 5.30979 5.52707 5.75370 5.85696 6.24235 6.27530 6.85309 7.36928 8.91240 Molecular weight = 260.12amu Principal moments of inertia in cm(-1) A = 0.044628 B = 0.003279 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.257992 B = 8537.880610 C = 9019.560677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.967 3.033 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.281 1.281 7 C -0.544 4.544 8 H 0.061 0.939 9 C 0.017 3.983 10 C -0.094 4.094 11 C -0.101 4.101 12 C -0.434 4.434 13 S 1.282 4.718 14 O -0.919 6.919 15 C -0.407 4.407 16 C -0.134 4.134 17 C 0.057 3.943 18 O -0.396 6.396 19 C 0.065 3.935 20 C -0.135 4.135 21 H 0.264 0.736 22 H 0.001 0.999 23 H -0.020 1.020 24 H 0.037 0.963 25 H 0.070 0.930 26 H 0.089 0.911 27 H 0.031 0.969 28 H 0.072 0.928 29 H 0.157 0.843 30 H 0.075 0.925 31 H 0.113 0.887 32 H 0.096 0.904 33 H 0.043 0.957 34 H 0.116 0.884 35 H 0.043 0.957 36 H 0.112 0.888 37 H 0.065 0.935 38 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.995 -22.600 -6.823 25.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.791 3.209 4 H -0.185 1.185 5 H -0.200 1.200 6 H -0.207 1.207 7 C -0.582 4.582 8 H 0.079 0.921 9 C -0.020 4.020 10 C -0.133 4.133 11 C -0.139 4.139 12 C -0.572 4.572 13 S 1.486 4.514 14 O -0.915 6.915 15 C -0.526 4.526 16 C -0.172 4.172 17 C -0.020 4.020 18 O -0.315 6.315 19 C -0.012 4.012 20 C -0.173 4.173 21 H 0.072 0.928 22 H 0.019 0.981 23 H -0.002 1.002 24 H 0.056 0.944 25 H 0.089 0.911 26 H 0.107 0.893 27 H 0.050 0.950 28 H 0.091 0.909 29 H 0.174 0.826 30 H 0.093 0.907 31 H 0.131 0.869 32 H 0.114 0.886 33 H 0.061 0.939 34 H 0.134 0.866 35 H 0.061 0.939 36 H 0.130 0.870 37 H 0.084 0.916 38 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 7.865 -22.764 -6.926 25.060 hybrid contribution 1.243 1.528 2.752 3.384 sum 9.108 -21.236 -4.174 23.481 Atomic orbital electron populations 1.70116 1.07882 1.27733 1.51777 1.26038 0.95811 1.03545 0.94752 0.85369 0.79078 0.78602 0.77808 1.18454 1.19977 1.20700 1.21767 0.93598 0.92447 1.50381 0.92081 1.19092 0.94682 0.93476 0.94759 1.21454 0.97899 0.93104 1.00817 1.21199 0.97341 0.93455 1.01933 1.27634 1.08601 1.12173 1.08757 1.69678 0.86567 0.85266 1.09865 1.92999 1.60036 1.84825 1.53629 1.27471 1.12125 1.08865 1.04114 1.22077 0.97197 1.00617 0.97319 1.22742 0.94215 0.82287 1.02801 1.87913 1.62644 1.36038 1.44878 1.22598 0.90562 0.98815 0.89272 1.21926 0.99129 0.92044 1.04233 0.92760 0.98065 1.00195 0.94377 0.91106 0.89254 0.95042 0.90931 0.82563 0.90673 0.86862 0.88587 0.93873 0.86563 0.93860 0.86985 0.91623 0.87644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.92 13.29 21.45 0.28 -57.63 16 2 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 3 Si 0.97 44.64 29.54 68.60 2.03 46.66 16 4 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 5 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 6 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 7 C -0.54 -31.49 9.11 25.60 0.23 -31.26 16 8 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 9 C 0.02 0.92 4.97 29.85 0.15 1.07 16 10 C -0.09 -3.83 5.15 30.59 0.16 -3.68 16 11 C -0.10 -3.34 5.22 30.60 0.16 -3.18 16 12 C -0.43 -10.06 5.34 71.98 0.38 -9.68 16 13 S 1.28 26.50 12.67 -56.49 -0.72 25.79 16 14 O -0.92 -33.05 18.14 -148.98 -2.70 -35.75 16 15 C -0.41 -6.48 2.80 30.71 0.09 -6.39 16 16 C -0.13 -1.41 5.09 30.69 0.16 -1.25 16 17 C 0.06 0.69 6.84 72.02 0.49 1.18 16 18 O -0.40 -6.34 10.77 -148.98 -1.60 -7.94 16 19 C 0.07 0.91 6.84 72.02 0.49 1.40 16 20 C -0.13 -1.97 5.43 30.69 0.17 -1.81 16 21 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 22 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 23 H -0.02 -1.22 8.14 -2.39 -0.02 -1.24 16 24 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 25 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 26 H 0.09 2.58 8.14 -2.38 -0.02 2.56 16 27 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.16 2.35 6.99 -2.39 -0.02 2.33 16 30 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.10 0.79 6.72 -2.39 -0.02 0.78 16 33 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 38 H 0.11 1.12 8.14 -2.38 -0.02 1.10 16 Total: -1.00 -80.65 319.88 1.23 -79.41 By element: Atomic # 1 Polarization: 1.81 SS G_CDS: 1.00 Total: 2.82 kcal Atomic # 6 Polarization: -56.30 SS G_CDS: 2.94 Total: -53.36 kcal Atomic # 7 Polarization: -57.92 SS G_CDS: 0.28 Total: -57.63 kcal Atomic # 8 Polarization: -39.38 SS G_CDS: -4.31 Total: -43.69 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.66 kcal Atomic # 16 Polarization: 26.50 SS G_CDS: -0.72 Total: 25.79 kcal Total: -80.65 1.23 -79.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385222734.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.800 kcal (2) G-P(sol) polarization free energy of solvation -80.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds