Wall clock time and date at job start Mon Mar 30 2020 04:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99723 * 2 1 4 4 H 1.48498 * 109.46831 * 240.00003 * 3 2 1 5 5 H 1.48501 * 109.47196 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46856 * 120.00227 * 3 2 1 7 7 C 1.37880 * 120.00225 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99982 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99561 * 359.97438 * 7 2 1 10 10 O 1.42100 * 106.40399 * 66.46521 * 9 7 2 11 11 O 1.42092 * 106.40406 * 293.53941 * 9 7 2 12 12 N 1.65607 * 107.21445 * 179.97438 * 9 7 2 13 13 C 1.47561 * 125.67701 * 270.00058 * 12 9 7 14 14 C 1.55185 * 105.00741 * 203.86099 * 13 12 9 15 15 C 1.53651 * 101.41395 * 324.50518 * 14 13 12 16 16 C 1.53083 * 111.76820 * 272.12520 * 15 14 13 17 17 C 1.54338 * 104.82256 * 218.64572 * 16 15 14 18 18 N 1.48028 * 107.02915 * 357.78805 * 17 16 15 19 19 C 1.48824 * 106.04315 * 24.89802 * 18 17 16 20 20 C 1.47409 * 125.66946 * 90.00215 * 12 9 7 21 21 H 0.96996 * 119.99985 * 359.97438 * 1 2 3 22 22 H 1.09002 * 110.33170 * 322.74261 * 13 12 9 23 23 H 1.09000 * 110.33197 * 84.87323 * 13 12 9 24 24 H 1.08992 * 111.03358 * 206.47756 * 14 13 12 25 25 H 1.08994 * 111.03639 * 82.53927 * 14 13 12 26 26 H 1.09002 * 110.38885 * 99.77462 * 16 15 14 27 27 H 1.09000 * 110.38309 * 337.50966 * 16 15 14 28 28 H 1.09004 * 109.91989 * 117.13756 * 17 16 15 29 29 H 1.09003 * 109.91898 * 238.23884 * 17 16 15 30 30 H 1.00897 * 110.99588 * 264.25001 * 18 17 16 31 31 H 1.08998 * 110.68850 * 80.89350 * 19 18 17 32 32 H 1.09002 * 110.68544 * 203.90863 * 19 18 17 33 33 H 1.09005 * 109.98371 * 58.54748 * 20 12 9 34 34 H 1.09001 * 109.98669 * 297.23848 * 20 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 16 1.1236 -2.7199 -0.0005 10 8 0.4510 -2.7950 -1.2501 11 8 0.4520 -2.7955 1.2494 12 7 2.2484 -3.9354 -0.0019 13 6 2.8321 -4.5664 -1.2013 14 6 3.3029 -5.9678 -0.7293 15 6 3.7751 -5.6640 0.7010 16 6 5.2419 -5.2272 0.7338 17 6 5.8222 -5.8876 2.0024 18 7 4.7103 -6.6066 2.6642 19 6 3.7237 -6.9135 1.5930 20 6 2.8332 -4.5668 1.1949 21 1 -0.4850 0.8400 0.0004 22 1 2.0785 -4.6635 -1.9829 23 1 3.6785 -3.9825 -1.5626 24 1 4.1262 -6.3314 -1.3441 25 1 2.4760 -6.6777 -0.7258 26 1 5.3135 -4.1418 0.8040 27 1 5.7645 -5.5849 -0.1534 28 1 6.6086 -6.5910 1.7284 29 1 6.2232 -5.1236 2.6685 30 1 4.2938 -6.0404 3.3880 31 1 4.0266 -7.7978 1.0324 32 1 2.7276 -7.0488 2.0144 33 1 2.0448 -5.0014 1.8096 34 1 3.3909 -3.8283 1.7709 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389578562.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:09 Heat of formation + Delta-G solvation = -117.395540 kcal Electronic energy + Delta-G solvation = -18536.425537 eV Core-core repulsion = 15593.895159 eV Total energy + Delta-G solvation = -2942.530378 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 260.098 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.02210 -37.49656 -37.11359 -36.21719 -35.23299 -31.86517 -30.12954 -29.99507 -28.31525 -25.68066 -23.30223 -22.42115 -20.81102 -20.12754 -19.29185 -18.31807 -17.55883 -17.07368 -16.44882 -16.14435 -15.76416 -15.42112 -14.93493 -14.59408 -14.43485 -14.04271 -13.69900 -13.49202 -13.20817 -13.05785 -13.04781 -12.88085 -12.60319 -12.53944 -12.36356 -12.18992 -12.05233 -11.68985 -11.53963 -11.37321 -11.29046 -11.04491 -9.82434 -9.51960 -8.79788 -7.55375 0.21094 1.29073 1.31526 1.44978 2.15937 2.51781 2.83041 3.24556 3.47039 3.60245 3.70893 3.80032 4.20255 4.23690 4.32350 4.36667 4.48190 4.57793 4.64122 4.70290 4.76257 4.95721 4.99021 5.03260 5.10318 5.12942 5.14465 5.26176 5.33276 5.40623 5.76310 5.83442 5.84964 6.43096 6.71511 8.15427 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.028828 B = 0.006856 C = 0.006287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.032109 B = 4082.838401 C = 4452.290365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.069 3.931 3 Si 0.991 3.009 4 H -0.249 1.249 5 H -0.261 1.261 6 H -0.250 1.250 7 C -1.043 5.043 8 H 0.116 0.884 9 S 2.733 3.267 10 O -1.039 7.039 11 O -1.041 7.041 12 N -1.023 6.023 13 C 0.107 3.893 14 C -0.100 4.100 15 C -0.099 4.099 16 C -0.136 4.136 17 C 0.044 3.956 18 N -0.683 5.683 19 C 0.062 3.938 20 C 0.131 3.869 21 H 0.300 0.700 22 H 0.064 0.936 23 H 0.070 0.930 24 H 0.115 0.885 25 H 0.082 0.918 26 H 0.059 0.941 27 H 0.093 0.907 28 H 0.087 0.913 29 H 0.069 0.931 30 H 0.339 0.661 31 H 0.101 0.899 32 H 0.075 0.925 33 H 0.056 0.944 34 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.909 -10.413 0.948 16.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.144 4.144 3 Si 0.808 3.192 4 H -0.173 1.173 5 H -0.185 1.185 6 H -0.174 1.174 7 C -1.177 5.177 8 H 0.134 0.866 9 S 2.836 3.164 10 O -1.029 7.029 11 O -1.031 7.031 12 N -0.862 5.862 13 C -0.018 4.018 14 C -0.140 4.140 15 C -0.102 4.102 16 C -0.174 4.174 17 C -0.085 4.085 18 N -0.309 5.309 19 C -0.068 4.068 20 C 0.005 3.995 21 H 0.110 0.890 22 H 0.083 0.917 23 H 0.088 0.912 24 H 0.133 0.867 25 H 0.101 0.899 26 H 0.078 0.922 27 H 0.112 0.888 28 H 0.105 0.895 29 H 0.088 0.912 30 H 0.154 0.846 31 H 0.120 0.880 32 H 0.094 0.906 33 H 0.074 0.926 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 12.035 -11.100 1.011 16.403 hybrid contribution -0.185 2.349 -0.178 2.363 sum 11.849 -8.751 0.833 14.754 Atomic orbital electron populations 1.69980 1.08807 1.32543 1.41284 1.26068 0.95424 1.05450 0.87454 0.85161 0.78843 0.74385 0.80790 1.17281 1.18456 1.17369 1.30956 1.07016 1.12777 1.66905 0.86569 0.99501 0.72214 0.73305 0.71368 1.93290 1.74338 1.88320 1.46998 1.93288 1.74454 1.88332 1.47029 1.58721 1.60973 1.53151 1.13379 1.22246 0.97846 0.94780 0.86955 1.22633 1.02318 0.94636 0.94374 1.22161 0.95181 0.95533 0.97304 1.22711 0.93204 1.00847 1.00681 1.22859 0.94819 0.96790 0.94058 1.62821 1.10251 1.46029 1.11807 1.23014 0.96268 0.95926 0.91587 1.21682 0.95840 0.94984 0.86962 0.88954 0.91714 0.91184 0.86698 0.89948 0.92190 0.88823 0.89461 0.91234 0.84615 0.88047 0.90615 0.92573 0.92661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -54.42 13.19 21.45 0.28 -54.13 16 2 C 0.07 3.91 5.46 84.65 0.46 4.37 16 3 Si 0.99 41.73 29.54 68.60 2.03 43.76 16 4 H -0.25 -9.83 7.11 99.48 0.71 -9.12 16 5 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 6 H -0.25 -9.88 7.11 99.48 0.71 -9.17 16 7 C -1.04 -59.04 9.75 67.73 0.66 -58.38 16 8 H 0.12 5.96 7.81 -2.91 -0.02 5.93 16 9 S 2.73 152.54 5.22 -56.49 -0.29 152.24 16 10 O -1.04 -63.85 17.35 -128.00 -2.22 -66.07 16 11 O -1.04 -64.15 17.61 -128.00 -2.25 -66.41 16 12 N -1.02 -42.40 3.71 -507.39 -1.88 -44.29 16 13 C 0.11 3.49 7.07 86.93 0.61 4.10 16 14 C -0.10 -2.26 6.05 31.56 0.19 -2.07 16 15 C -0.10 -2.31 0.68 -51.79 -0.04 -2.35 16 16 C -0.14 -2.70 6.03 31.08 0.19 -2.51 16 17 C 0.04 0.78 7.55 86.54 0.65 1.44 16 18 N -0.68 -13.44 7.52 -502.96 -3.78 -17.22 16 19 C 0.06 1.22 6.51 86.14 0.56 1.78 16 20 C 0.13 4.41 6.21 86.14 0.53 4.95 16 21 H 0.30 16.35 8.31 -92.71 -0.77 15.58 16 22 H 0.06 2.26 7.79 -2.39 -0.02 2.24 16 23 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 24 H 0.11 1.81 7.63 -2.39 -0.02 1.79 16 25 H 0.08 1.76 8.08 -2.39 -0.02 1.74 16 26 H 0.06 1.39 7.61 -2.39 -0.02 1.37 16 27 H 0.09 1.51 7.56 -2.39 -0.02 1.49 16 28 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 29 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.34 6.68 8.92 -89.70 -0.80 5.88 16 31 H 0.10 1.68 8.07 -2.39 -0.02 1.66 16 32 H 0.08 1.55 7.67 -2.39 -0.02 1.53 16 33 H 0.06 1.95 7.57 -2.38 -0.02 1.93 16 34 H 0.06 1.88 7.60 -2.39 -0.02 1.87 16 Total: -1.00 -77.04 289.80 -3.99 -81.03 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: 0.30 Total: 19.75 kcal Atomic # 6 Polarization: -52.49 SS G_CDS: 3.83 Total: -48.67 kcal Atomic # 7 Polarization: -110.26 SS G_CDS: -5.38 Total: -115.64 kcal Atomic # 8 Polarization: -128.00 SS G_CDS: -4.47 Total: -132.48 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.76 kcal Atomic # 16 Polarization: 152.54 SS G_CDS: -0.29 Total: 152.24 kcal Total: -77.04 -3.99 -81.03 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389578562.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.365 kcal (2) G-P(sol) polarization free energy of solvation -77.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds