Wall clock time and date at job start Mon Mar 30 2020 04:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 S 1.76199 * 119.99836 * 180.27759 * 7 2 1 10 10 O 1.42103 * 106.40082 * 293.25616 * 9 7 2 11 11 O 1.42095 * 106.40428 * 66.17927 * 9 7 2 12 12 N 1.65600 * 107.21522 * 179.72073 * 9 7 2 13 13 C 1.47537 * 125.67238 * 269.68806 * 12 9 7 14 14 C 1.55361 * 104.85889 * 156.01751 * 13 12 9 15 15 C 1.53910 * 101.35939 * 36.06745 * 14 13 12 16 16 C 1.53382 * 111.11108 * 86.08872 * 15 14 13 17 17 C 1.55216 * 102.59399 * 100.28249 * 16 15 14 18 18 N 1.48644 * 103.39416 * 36.37940 * 17 16 15 19 19 C 1.48254 * 105.87486 * 321.52560 * 18 17 16 20 20 C 1.47347 * 125.67248 * 90.00003 * 12 9 7 21 21 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 22 22 H 1.08999 * 110.34004 * 274.98994 * 13 12 9 23 23 H 1.08999 * 110.34051 * 37.23444 * 13 12 9 24 24 H 1.08997 * 111.23062 * 277.98233 * 14 13 12 25 25 H 1.09010 * 110.95380 * 154.02524 * 14 13 12 26 26 H 1.08995 * 110.78238 * 218.56095 * 16 15 14 27 27 H 1.09004 * 110.77938 * 342.00503 * 16 15 14 28 28 H 1.08994 * 110.63137 * 277.90701 * 17 16 15 29 29 H 1.09000 * 110.63489 * 154.85994 * 17 16 15 30 30 H 1.00901 * 110.99796 * 82.07037 * 18 17 16 31 31 H 1.08999 * 110.03893 * 265.79778 * 19 18 17 32 32 H 1.09000 * 110.08186 * 144.36828 * 19 18 17 33 33 H 1.09000 * 109.96607 * 301.27620 * 20 12 9 34 34 H 1.09000 * 109.96614 * 62.53993 * 20 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 16 3.7665 -1.1941 0.0069 10 8 4.1730 -0.6522 -1.2423 11 8 4.1626 -0.6471 1.2571 12 7 4.2567 -2.7759 0.0121 13 6 4.5125 -3.5934 1.2133 14 6 4.3277 -5.0623 0.7424 15 6 4.8962 -4.9964 -0.6864 16 6 6.4162 -5.2016 -0.6861 17 6 6.5567 -6.6904 -1.1019 18 7 5.4610 -6.8773 -2.0887 19 6 4.3121 -6.0958 -1.5717 20 6 4.5160 -3.5990 -1.1822 21 1 -0.4849 0.8400 0.0004 22 1 5.5294 -3.4328 1.5714 23 1 3.7923 -3.3532 1.9955 24 1 3.2747 -5.3439 0.7318 25 1 4.9069 -5.7464 1.3627 26 1 6.8947 -4.5492 -1.4164 27 1 6.8284 -5.0374 0.3095 28 1 6.4146 -7.3445 -0.2416 29 1 7.5265 -6.8697 -1.5661 30 1 5.7380 -6.5514 -3.0026 31 1 3.6566 -6.7392 -0.9847 32 1 3.7575 -5.6536 -2.3994 33 1 3.6186 -3.6540 -1.7984 34 1 5.3374 -3.1719 -1.7574 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389578569.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:12 Heat of formation + Delta-G solvation = -72.212251 kcal Electronic energy + Delta-G solvation = -18541.961967 eV Core-core repulsion = 15601.390884 eV Total energy + Delta-G solvation = -2940.571083 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 260.098 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.99561 -36.06212 -35.66021 -34.45126 -33.03895 -30.62651 -29.28634 -28.99438 -26.39743 -24.23425 -22.52289 -21.50929 -19.11393 -18.74391 -17.51506 -16.72795 -16.67414 -15.51172 -14.92475 -14.60001 -14.29540 -13.99173 -13.49308 -13.38210 -13.11762 -12.82613 -12.58140 -12.44056 -11.97957 -11.88143 -11.45859 -11.28277 -11.19650 -10.85132 -10.78320 -10.64616 -10.50120 -10.49625 -10.36702 -9.84381 -9.22323 -9.16256 -8.73714 -8.22532 -6.81589 -5.34943 1.96316 3.05468 3.15987 3.25005 3.93725 4.10369 4.22965 4.42355 4.54442 4.59151 4.85048 5.07915 5.15754 5.31678 5.36630 5.41264 5.55304 5.68432 5.71985 5.82304 5.88277 5.90802 5.96547 6.01079 6.11182 6.18762 6.21964 6.35118 6.63036 6.69454 7.20136 7.23029 7.47969 8.21221 8.69371 10.30927 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.040903 B = 0.006438 C = 0.006256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.379843 B = 4348.459759 C = 4474.693361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.153 3.847 3 Si 0.801 3.199 4 H -0.246 1.246 5 H -0.254 1.254 6 H -0.220 1.220 7 C -1.015 5.015 8 H 0.121 0.879 9 S 2.690 3.310 10 O -1.008 7.008 11 O -1.004 7.004 12 N -1.012 6.012 13 C 0.126 3.874 14 C -0.114 4.114 15 C -0.101 4.101 16 C -0.144 4.144 17 C 0.043 3.957 18 N -0.677 5.677 19 C 0.055 3.945 20 C 0.139 3.861 21 H 0.281 0.719 22 H 0.058 0.942 23 H 0.076 0.924 24 H 0.079 0.921 25 H 0.077 0.923 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.336 0.664 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.653 -11.561 -1.076 15.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.067 4.067 3 Si 0.621 3.379 4 H -0.170 1.170 5 H -0.178 1.178 6 H -0.142 1.142 7 C -1.149 5.149 8 H 0.139 0.861 9 S 2.794 3.206 10 O -0.998 6.998 11 O -0.995 6.995 12 N -0.848 5.848 13 C 0.000 4.000 14 C -0.153 4.153 15 C -0.104 4.104 16 C -0.183 4.183 17 C -0.087 4.087 18 N -0.304 5.304 19 C -0.075 4.075 20 C 0.013 3.987 21 H 0.091 0.909 22 H 0.077 0.923 23 H 0.095 0.905 24 H 0.098 0.902 25 H 0.096 0.904 26 H 0.090 0.910 27 H 0.096 0.904 28 H 0.097 0.903 29 H 0.090 0.910 30 H 0.151 0.849 31 H 0.101 0.899 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 9.821 -11.332 -0.861 15.020 hybrid contribution -0.280 1.505 -0.144 1.538 sum 9.541 -9.827 -1.005 13.733 Atomic orbital electron populations 1.69988 1.06563 1.29029 1.39655 1.24435 0.94793 0.98789 0.88658 0.87882 0.83614 0.84593 0.81854 1.16994 1.17791 1.14230 1.30539 1.15712 1.02116 1.66580 0.86120 1.01006 0.77137 0.69338 0.73138 1.93398 1.85290 1.75606 1.45513 1.93458 1.85513 1.75231 1.45254 1.58721 1.84734 1.30183 1.11204 1.21921 1.00576 0.89528 0.87961 1.22772 1.01667 0.96487 0.94417 1.22041 0.95713 0.95553 0.97071 1.23080 0.94690 0.97711 1.02857 1.23176 0.94352 0.94814 0.96320 1.62837 1.06265 1.56029 1.05221 1.22707 0.93977 0.92716 0.98129 1.21571 1.00507 0.88830 0.87786 0.90896 0.92327 0.90518 0.90214 0.90405 0.91039 0.90393 0.90273 0.90980 0.84856 0.89942 0.90844 0.91478 0.91900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.97 13.96 55.43 0.77 -23.20 16 2 C 0.15 4.44 5.47 -17.82 -0.10 4.34 16 3 Si 0.80 20.78 26.54 -169.99 -4.51 16.27 16 4 H -0.25 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.25 -6.02 7.11 56.52 0.40 -5.62 16 6 H -0.22 -5.82 5.60 56.52 0.32 -5.51 16 7 C -1.01 -28.69 10.29 30.60 0.31 -28.38 16 8 H 0.12 3.45 8.06 -52.49 -0.42 3.03 16 9 S 2.69 68.58 4.44 -107.50 -0.48 68.10 16 10 O -1.01 -27.32 16.43 -57.17 -0.94 -28.26 16 11 O -1.00 -27.30 15.59 -57.17 -0.89 -28.19 16 12 N -1.01 -20.08 3.71 -111.55 -0.41 -20.49 16 13 C 0.13 2.05 6.89 -2.22 -0.02 2.03 16 14 C -0.11 -1.45 5.75 -25.00 -0.14 -1.59 16 15 C -0.10 -1.27 0.74 -153.92 -0.11 -1.38 16 16 C -0.14 -1.54 6.04 -25.36 -0.15 -1.70 16 17 C 0.04 0.40 7.57 -1.68 -0.01 0.38 16 18 N -0.68 -6.91 7.53 -110.26 -0.83 -7.74 16 19 C 0.05 0.61 6.87 -3.19 -0.02 0.59 16 20 C 0.14 2.30 6.20 -3.54 -0.02 2.27 16 21 H 0.28 7.40 8.31 -40.82 -0.34 7.06 16 22 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 23 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 24 H 0.08 1.01 7.92 -51.93 -0.41 0.60 16 25 H 0.08 0.80 7.95 -51.92 -0.41 0.39 16 26 H 0.07 0.78 7.49 -51.93 -0.39 0.39 16 27 H 0.08 0.81 7.77 -51.93 -0.40 0.40 16 28 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.34 3.05 8.92 -39.29 -0.35 2.70 16 31 H 0.08 0.92 7.61 -51.93 -0.40 0.52 16 32 H 0.07 0.82 7.36 -51.93 -0.38 0.44 16 33 H 0.07 1.11 7.46 -51.93 -0.39 0.72 16 34 H 0.06 1.02 7.43 -51.93 -0.39 0.63 16 LS Contribution 282.66 15.07 4.26 4.26 Total: -1.00 -32.87 282.66 -8.15 -41.01 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -4.85 Total: 1.67 kcal Atomic # 6 Polarization: -23.16 SS G_CDS: -0.26 Total: -23.42 kcal Atomic # 7 Polarization: -50.96 SS G_CDS: -0.47 Total: -51.43 kcal Atomic # 8 Polarization: -54.62 SS G_CDS: -1.83 Total: -56.45 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -4.51 Total: 16.27 kcal Atomic # 16 Polarization: 68.58 SS G_CDS: -0.48 Total: 68.10 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -32.87 -8.15 -41.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389578569.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.200 kcal (2) G-P(sol) polarization free energy of solvation -32.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds