Wall clock time and date at job start Mon Mar 30 2020 04:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 S 1.76199 * 119.99836 * 180.27759 * 7 2 1 10 10 O 1.42103 * 106.40082 * 293.25616 * 9 7 2 11 11 O 1.42095 * 106.40428 * 66.17927 * 9 7 2 12 12 N 1.65600 * 107.21522 * 179.72073 * 9 7 2 13 13 C 1.47537 * 125.67238 * 269.68806 * 12 9 7 14 14 C 1.55361 * 104.85889 * 156.01751 * 13 12 9 15 15 C 1.53910 * 101.35939 * 36.06745 * 14 13 12 16 16 C 1.53382 * 111.11108 * 86.08872 * 15 14 13 17 17 C 1.55216 * 102.59399 * 100.28249 * 16 15 14 18 18 N 1.48644 * 103.39416 * 36.37940 * 17 16 15 19 19 C 1.48254 * 105.87486 * 321.52560 * 18 17 16 20 20 C 1.47347 * 125.67248 * 90.00003 * 12 9 7 21 21 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 22 22 H 1.08999 * 110.34004 * 274.98994 * 13 12 9 23 23 H 1.08999 * 110.34051 * 37.23444 * 13 12 9 24 24 H 1.08997 * 111.23062 * 277.98233 * 14 13 12 25 25 H 1.09010 * 110.95380 * 154.02524 * 14 13 12 26 26 H 1.08995 * 110.78238 * 218.56095 * 16 15 14 27 27 H 1.09004 * 110.77938 * 342.00503 * 16 15 14 28 28 H 1.08994 * 110.63137 * 277.90701 * 17 16 15 29 29 H 1.09000 * 110.63489 * 154.85994 * 17 16 15 30 30 H 1.00901 * 110.99796 * 82.07037 * 18 17 16 31 31 H 1.08999 * 110.03893 * 265.79778 * 19 18 17 32 32 H 1.09000 * 110.08186 * 144.36828 * 19 18 17 33 33 H 1.09000 * 109.96607 * 301.27620 * 20 12 9 34 34 H 1.09000 * 109.96614 * 62.53993 * 20 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 16 3.7665 -1.1941 0.0069 10 8 4.1730 -0.6522 -1.2423 11 8 4.1626 -0.6471 1.2571 12 7 4.2567 -2.7759 0.0121 13 6 4.5125 -3.5934 1.2133 14 6 4.3277 -5.0623 0.7424 15 6 4.8962 -4.9964 -0.6864 16 6 6.4162 -5.2016 -0.6861 17 6 6.5567 -6.6904 -1.1019 18 7 5.4610 -6.8773 -2.0887 19 6 4.3121 -6.0958 -1.5717 20 6 4.5160 -3.5990 -1.1822 21 1 -0.4849 0.8400 0.0004 22 1 5.5294 -3.4328 1.5714 23 1 3.7923 -3.3532 1.9955 24 1 3.2747 -5.3439 0.7318 25 1 4.9069 -5.7464 1.3627 26 1 6.8947 -4.5492 -1.4164 27 1 6.8284 -5.0374 0.3095 28 1 6.4146 -7.3445 -0.2416 29 1 7.5265 -6.8697 -1.5661 30 1 5.7380 -6.5514 -3.0026 31 1 3.6566 -6.7392 -0.9847 32 1 3.7575 -5.6536 -2.3994 33 1 3.6186 -3.6540 -1.7984 34 1 5.3374 -3.1719 -1.7574 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389578569.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:11 Heat of formation + Delta-G solvation = -99.705880 kcal Electronic energy + Delta-G solvation = -18543.154180 eV Core-core repulsion = 15601.390884 eV Total energy + Delta-G solvation = -2941.763297 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 260.098 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.03267 -37.76629 -37.18704 -36.56199 -35.23314 -31.81542 -30.27862 -30.02638 -28.59618 -25.38857 -23.63045 -22.47418 -20.77531 -20.13009 -19.41116 -18.66209 -17.63011 -17.28065 -16.41928 -16.19712 -15.72447 -15.26316 -15.06101 -14.92706 -14.58063 -14.52037 -13.86513 -13.58364 -13.49630 -13.21910 -12.97566 -12.91951 -12.79023 -12.66816 -12.45082 -12.05094 -11.89092 -11.74471 -11.50805 -11.38240 -11.36725 -11.25170 -9.85899 -9.50734 -9.01267 -7.57423 0.01699 1.00398 1.09760 1.16781 1.84629 2.36421 2.43513 3.29745 3.31506 3.35264 3.62924 3.69997 4.07632 4.20465 4.26182 4.35547 4.51504 4.58397 4.62731 4.68481 4.72687 4.87900 4.97453 5.03159 5.07983 5.12891 5.14411 5.30093 5.35212 5.39914 5.64588 5.83190 5.96803 6.48414 6.49487 8.16779 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.040903 B = 0.006438 C = 0.006256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.379843 B = 4348.459759 C = 4474.693361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.107 3.893 3 Si 0.824 3.176 4 H -0.238 1.238 5 H -0.216 1.216 6 H -0.230 1.230 7 C -1.038 5.038 8 H 0.103 0.897 9 S 2.711 3.289 10 O -1.028 7.028 11 O -1.024 7.024 12 N -1.015 6.015 13 C 0.111 3.889 14 C -0.104 4.104 15 C -0.093 4.093 16 C -0.143 4.143 17 C 0.049 3.951 18 N -0.680 5.680 19 C 0.057 3.943 20 C 0.128 3.872 21 H 0.292 0.708 22 H 0.076 0.924 23 H 0.065 0.935 24 H 0.077 0.923 25 H 0.112 0.888 26 H 0.067 0.933 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.343 0.657 31 H 0.086 0.914 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.113 -12.734 -0.926 16.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.109 4.109 3 Si 0.641 3.359 4 H -0.162 1.162 5 H -0.138 1.138 6 H -0.153 1.153 7 C -1.171 5.171 8 H 0.121 0.879 9 S 2.813 3.187 10 O -1.018 7.018 11 O -1.014 7.014 12 N -0.854 5.854 13 C -0.014 4.014 14 C -0.143 4.143 15 C -0.096 4.096 16 C -0.182 4.182 17 C -0.080 4.080 18 N -0.307 5.307 19 C -0.073 4.073 20 C 0.002 3.998 21 H 0.103 0.897 22 H 0.094 0.906 23 H 0.084 0.916 24 H 0.096 0.904 25 H 0.130 0.870 26 H 0.086 0.914 27 H 0.104 0.896 28 H 0.105 0.895 29 H 0.108 0.892 30 H 0.158 0.842 31 H 0.105 0.895 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 11.248 -12.494 -0.712 16.826 hybrid contribution -0.727 1.761 -0.204 1.916 sum 10.521 -10.733 -0.916 15.057 Atomic orbital electron populations 1.70009 1.07423 1.30547 1.40304 1.25186 0.95674 1.01469 0.88599 0.87507 0.82891 0.82832 0.82684 1.16165 1.13754 1.15263 1.31052 1.18112 1.01540 1.66377 0.87909 1.00103 0.75636 0.70718 0.72208 1.93359 1.84981 1.77282 1.46189 1.93420 1.85203 1.76909 1.45907 1.58336 1.84005 1.29184 1.13924 1.22300 1.01262 0.91278 0.86518 1.22787 1.02346 0.94401 0.94744 1.22031 0.97392 0.93243 0.96966 1.23088 0.92874 0.98852 1.03380 1.23212 0.94800 0.93591 0.96424 1.62851 1.06367 1.55604 1.05867 1.22652 0.94460 0.92333 0.97853 1.21898 1.00317 0.90807 0.86740 0.89742 0.90582 0.91609 0.90402 0.86990 0.91381 0.89569 0.89531 0.89230 0.84164 0.89531 0.91252 0.92341 0.91776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -50.13 13.96 21.45 0.30 -49.83 16 2 C 0.11 6.31 5.47 84.66 0.46 6.77 16 3 Si 0.82 41.76 26.54 68.60 1.82 43.58 16 4 H -0.24 -11.69 7.11 99.48 0.71 -10.99 16 5 H -0.22 -9.54 7.11 99.48 0.71 -8.84 16 6 H -0.23 -12.01 5.60 99.48 0.56 -11.45 16 7 C -1.04 -60.04 10.29 67.74 0.70 -59.34 16 8 H 0.10 6.11 8.06 -2.91 -0.02 6.09 16 9 S 2.71 139.26 4.44 -56.49 -0.25 139.01 16 10 O -1.03 -56.00 16.43 -128.00 -2.10 -58.11 16 11 O -1.02 -55.82 15.59 -128.00 -2.00 -57.82 16 12 N -1.01 -39.98 3.71 -506.83 -1.88 -41.86 16 13 C 0.11 3.47 6.89 86.99 0.60 4.07 16 14 C -0.10 -2.38 5.75 31.71 0.18 -2.19 16 15 C -0.09 -2.14 0.74 -51.80 -0.04 -2.18 16 16 C -0.14 -2.63 6.04 31.48 0.19 -2.44 16 17 C 0.05 0.73 7.57 86.73 0.66 1.38 16 18 N -0.68 -11.98 7.53 -502.76 -3.79 -15.76 16 19 C 0.06 1.17 6.87 85.97 0.59 1.76 16 20 C 0.13 4.13 6.20 86.24 0.53 4.66 16 21 H 0.29 15.40 8.31 -92.71 -0.77 14.63 16 22 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 23 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 24 H 0.08 1.82 7.92 -2.39 -0.02 1.81 16 25 H 0.11 1.85 7.95 -2.38 -0.02 1.83 16 26 H 0.07 1.32 7.49 -2.39 -0.02 1.30 16 27 H 0.09 1.47 7.77 -2.38 -0.02 1.45 16 28 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.34 5.36 8.92 -89.69 -0.80 4.56 16 31 H 0.09 1.72 7.61 -2.39 -0.02 1.70 16 32 H 0.07 1.47 7.36 -2.39 -0.02 1.45 16 33 H 0.06 1.96 7.46 -2.39 -0.02 1.94 16 34 H 0.06 2.04 7.43 -2.39 -0.02 2.02 16 Total: -1.00 -70.47 282.66 -3.87 -74.34 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: 0.15 Total: 13.97 kcal Atomic # 6 Polarization: -51.39 SS G_CDS: 3.87 Total: -47.52 kcal Atomic # 7 Polarization: -102.09 SS G_CDS: -5.37 Total: -107.46 kcal Atomic # 8 Polarization: -111.83 SS G_CDS: -4.10 Total: -115.93 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 1.82 Total: 43.58 kcal Atomic # 16 Polarization: 139.26 SS G_CDS: -0.25 Total: 139.01 kcal Total: -70.47 -3.87 -74.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389578569.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.369 kcal (2) G-P(sol) polarization free energy of solvation -70.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds