Wall clock time and date at job start Mon Mar 30 2020 04:11:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00175 * 2 1 4 4 H 1.48498 * 109.47200 * 239.72287 * 3 2 1 5 5 H 1.48498 * 109.46671 * 359.72211 * 3 2 1 6 6 H 1.48499 * 109.47156 * 119.72301 * 3 2 1 7 7 C 1.37885 * 119.99913 * 179.72292 * 2 1 3 8 8 H 1.08000 * 119.99535 * 180.02562 * 7 2 1 9 9 S 1.76192 * 120.00029 * 0.02562 * 7 2 1 10 10 O 1.42100 * 106.40434 * 293.54174 * 9 7 2 11 11 O 1.42104 * 106.40118 * 66.45810 * 9 7 2 12 12 N 1.65602 * 107.21927 * 179.97438 * 9 7 2 13 13 C 1.47163 * 121.05526 * 90.00104 * 12 9 7 14 14 C 1.53031 * 107.56347 * 122.20702 * 13 12 9 15 15 C 1.50989 * 111.27613 * 54.39153 * 14 13 12 16 16 H 1.08998 * 108.99304 * 183.93805 * 15 14 13 17 17 N 1.47532 * 113.09013 * 63.71411 * 15 14 13 18 18 C 1.48301 * 104.97181 * 195.61725 * 17 15 14 19 19 C 1.54138 * 107.06623 * 24.77199 * 18 17 15 20 20 C 1.53979 * 113.49601 * 305.49808 * 15 14 13 21 21 H 1.08998 * 112.33351 * 283.78601 * 20 15 14 22 22 C 1.46485 * 121.05351 * 269.72171 * 12 9 7 23 23 H 0.97001 * 119.99646 * 0.28069 * 1 2 3 24 24 H 1.08999 * 109.84099 * 241.72102 * 13 12 9 25 25 H 1.09000 * 109.84303 * 2.69141 * 13 12 9 26 26 H 1.09004 * 109.11601 * 174.84568 * 14 13 12 27 27 H 1.08997 * 109.11983 * 293.97953 * 14 13 12 28 28 H 1.00901 * 110.99948 * 315.61874 * 17 15 14 29 29 H 1.09005 * 109.91903 * 265.41979 * 18 17 15 30 30 H 1.08999 * 110.08349 * 144.21812 * 18 17 15 31 31 H 1.08995 * 110.36695 * 241.74418 * 19 18 17 32 32 H 1.08989 * 110.36563 * 119.42417 * 19 18 17 33 33 H 1.08995 * 109.32353 * 355.99256 * 22 12 9 34 34 H 1.08996 * 109.31937 * 115.46001 * 22 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1081 1.6935 -1.2091 5 1 1.2842 2.7464 -0.0068 6 1 3.0979 1.6993 1.2159 7 6 2.0046 -1.1941 0.0058 8 1 3.0846 -1.1940 0.0062 9 16 1.1236 -2.7200 0.0125 10 8 0.4509 -2.7895 1.2622 11 8 0.4519 -2.8010 -1.2372 12 7 2.2483 -3.9354 0.0178 13 6 2.7639 -4.4871 1.2809 14 6 2.4721 -5.9893 1.2820 15 6 3.0278 -6.6562 0.0466 16 1 2.7395 -7.7074 0.0508 17 7 4.4990 -6.5855 -0.0370 18 6 4.8195 -6.9245 -1.4448 19 6 3.5761 -6.5789 -2.2876 20 6 2.5477 -6.0124 -1.2672 21 1 1.5219 -6.2875 -1.5126 22 6 2.7571 -4.4996 -1.2346 23 1 -0.4850 0.8401 -0.0041 24 1 3.8389 -4.3190 1.3466 25 1 2.2623 -4.0122 2.1241 26 1 2.9247 -6.4403 2.1652 27 1 1.3936 -6.1435 1.3155 28 1 4.8305 -5.6616 0.1969 29 1 5.0414 -7.9883 -1.5293 30 1 5.6735 -6.3391 -1.7856 31 1 3.1812 -7.4750 -2.7662 32 1 3.8224 -5.8256 -3.0357 33 1 2.2307 -4.0463 -2.0745 34 1 3.8220 -4.2841 -1.3209 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389638440.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:03 Heat of formation + Delta-G solvation = -91.600638 kcal Electronic energy + Delta-G solvation = -18790.275472 eV Core-core repulsion = 15848.863645 eV Total energy + Delta-G solvation = -2941.411827 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 260.098 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.92078 -35.36458 -35.12645 -33.97021 -33.08063 -32.02599 -29.82776 -27.89241 -26.13069 -23.90688 -23.03639 -20.78987 -19.23549 -18.64408 -17.24047 -16.46959 -15.83821 -15.47606 -15.15074 -14.80226 -14.38670 -13.93766 -13.56978 -13.52358 -13.11897 -12.50965 -12.08116 -12.00164 -11.78923 -11.37202 -11.22669 -11.22127 -11.09227 -10.84797 -10.67498 -10.63409 -10.46056 -10.30387 -10.03162 -9.90978 -9.25452 -8.94685 -8.61848 -8.17804 -6.71063 -5.33705 2.23587 3.06919 3.11387 3.16921 4.03847 4.26655 4.47094 4.62392 4.79889 4.83045 5.01871 5.23946 5.35197 5.41866 5.45186 5.56945 5.66866 5.78484 5.87474 5.92882 5.94739 6.02765 6.10827 6.20193 6.26484 6.29665 6.44046 6.47079 6.81588 6.84521 7.30949 7.40196 7.55748 7.95334 8.87355 10.22442 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.033500 B = 0.006878 C = 0.006622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.618695 B = 4070.246433 C = 4227.082914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.133 3.867 3 Si 0.920 3.080 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.264 1.264 7 C -1.022 5.022 8 H 0.101 0.899 9 S 2.717 3.283 10 O -1.003 7.003 11 O -1.004 7.004 12 N -1.011 6.011 13 C 0.122 3.878 14 C -0.128 4.128 15 C 0.083 3.917 16 H 0.077 0.923 17 N -0.666 5.666 18 C 0.040 3.960 19 C -0.149 4.149 20 C -0.134 4.134 21 H 0.091 0.909 22 C 0.131 3.869 23 H 0.291 0.709 24 H 0.059 0.941 25 H 0.097 0.903 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.337 0.663 29 H 0.073 0.927 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.092 0.908 34 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.352 -10.110 -1.461 13.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.085 4.085 3 Si 0.744 3.256 4 H -0.189 1.189 5 H -0.201 1.201 6 H -0.188 1.188 7 C -1.155 5.155 8 H 0.119 0.881 9 S 2.818 3.182 10 O -0.993 6.993 11 O -0.995 6.995 12 N -0.846 5.846 13 C -0.004 4.004 14 C -0.167 4.167 15 C -0.027 4.027 16 H 0.095 0.905 17 N -0.294 5.294 18 C -0.090 4.090 19 C -0.189 4.189 20 C -0.156 4.156 21 H 0.109 0.891 22 C 0.004 3.996 23 H 0.102 0.898 24 H 0.077 0.923 25 H 0.115 0.885 26 H 0.095 0.905 27 H 0.092 0.908 28 H 0.154 0.846 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.110 0.890 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.407 -10.821 -1.130 13.162 hybrid contribution 0.723 1.998 -0.636 2.218 sum 8.130 -8.823 -1.766 12.127 Atomic orbital electron populations 1.69889 1.06778 1.30848 1.40073 1.24757 0.94466 1.00797 0.88501 0.86211 0.79908 0.79726 0.79780 1.18897 1.20066 1.18823 1.30614 1.06071 1.11945 1.66882 0.88086 1.00458 0.72088 0.72893 0.72768 1.93348 1.72654 1.87582 1.45730 1.93345 1.72761 1.87560 1.45786 1.58213 1.62668 1.53974 1.09696 1.21278 0.98938 0.93066 0.87149 1.21450 1.01792 0.96191 0.97286 1.21753 0.87595 0.99400 0.94000 0.90523 1.63082 1.11197 1.33597 1.21536 1.22796 0.97064 1.01391 0.87757 1.23073 0.96089 1.01218 0.98514 1.23033 0.99995 0.96572 0.95953 0.89067 1.21080 0.98811 0.92200 0.87509 0.89816 0.92286 0.88509 0.90548 0.90777 0.84621 0.90869 0.91799 0.91307 0.90943 0.88970 0.92956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.94 13.19 55.43 0.73 -24.21 16 2 C 0.13 3.71 5.46 -17.82 -0.10 3.61 16 3 Si 0.92 20.58 29.54 -169.99 -5.02 15.56 16 4 H -0.26 -5.71 7.11 56.52 0.40 -5.31 16 5 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 6 H -0.26 -5.69 7.11 56.52 0.40 -5.29 16 7 C -1.02 -28.11 9.75 30.60 0.30 -27.81 16 8 H 0.10 2.55 7.81 -52.49 -0.41 2.14 16 9 S 2.72 71.63 5.02 -107.50 -0.54 71.09 16 10 O -1.00 -28.92 16.69 -57.17 -0.95 -29.87 16 11 O -1.00 -29.05 16.64 -57.17 -0.95 -30.00 16 12 N -1.01 -20.11 3.26 -114.02 -0.37 -20.48 16 13 C 0.12 2.04 6.20 -3.66 -0.02 2.02 16 14 C -0.13 -1.81 5.77 -27.73 -0.16 -1.97 16 15 C 0.08 1.10 2.96 -67.87 -0.20 0.90 16 16 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 17 N -0.67 -8.22 7.25 -105.10 -0.76 -8.98 16 18 C 0.04 0.43 7.38 -2.46 -0.02 0.41 16 19 C -0.15 -1.69 6.20 -24.78 -0.15 -1.85 16 20 C -0.13 -1.90 3.74 -88.88 -0.33 -2.23 16 21 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 22 C 0.13 2.23 5.15 -4.18 -0.02 2.20 16 23 H 0.29 7.73 8.31 -40.82 -0.34 7.39 16 24 H 0.06 0.85 7.06 -51.93 -0.37 0.49 16 25 H 0.10 1.74 7.03 -51.93 -0.36 1.38 16 26 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.34 4.20 6.76 -39.29 -0.27 3.94 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.80 7.75 -51.94 -0.40 0.39 16 33 H 0.09 1.72 6.94 -51.93 -0.36 1.36 16 34 H 0.05 0.79 7.33 -51.93 -0.38 0.41 16 LS Contribution 281.51 15.07 4.24 4.24 Total: -1.00 -33.54 281.51 -8.98 -42.52 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -4.65 Total: 4.85 kcal Atomic # 6 Polarization: -24.01 SS G_CDS: -0.71 Total: -24.72 kcal Atomic # 7 Polarization: -53.26 SS G_CDS: -0.40 Total: -53.67 kcal Atomic # 8 Polarization: -57.97 SS G_CDS: -1.91 Total: -59.87 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Atomic # 16 Polarization: 71.63 SS G_CDS: -0.54 Total: 71.09 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -33.54 -8.98 -42.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389638440.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.080 kcal (2) G-P(sol) polarization free energy of solvation -33.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds