Wall clock time and date at job start Mon Mar 30 2020 04:11:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00175 * 2 1 4 4 H 1.48498 * 109.47200 * 239.72287 * 3 2 1 5 5 H 1.48498 * 109.46671 * 359.72211 * 3 2 1 6 6 H 1.48499 * 109.47156 * 119.72301 * 3 2 1 7 7 C 1.37885 * 119.99913 * 179.72292 * 2 1 3 8 8 H 1.08000 * 119.99535 * 180.02562 * 7 2 1 9 9 S 1.76192 * 120.00029 * 0.02562 * 7 2 1 10 10 O 1.42100 * 106.40434 * 293.54174 * 9 7 2 11 11 O 1.42104 * 106.40118 * 66.45810 * 9 7 2 12 12 N 1.65602 * 107.21927 * 179.97438 * 9 7 2 13 13 C 1.47163 * 121.05526 * 90.00104 * 12 9 7 14 14 C 1.53031 * 107.56347 * 122.20702 * 13 12 9 15 15 C 1.50989 * 111.27613 * 54.39153 * 14 13 12 16 16 H 1.08998 * 108.99304 * 183.93805 * 15 14 13 17 17 N 1.47532 * 113.09013 * 63.71411 * 15 14 13 18 18 C 1.48301 * 104.97181 * 195.61725 * 17 15 14 19 19 C 1.54138 * 107.06623 * 24.77199 * 18 17 15 20 20 C 1.53979 * 113.49601 * 305.49808 * 15 14 13 21 21 H 1.08998 * 112.33351 * 283.78601 * 20 15 14 22 22 C 1.46485 * 121.05351 * 269.72171 * 12 9 7 23 23 H 0.97001 * 119.99646 * 0.28069 * 1 2 3 24 24 H 1.08999 * 109.84099 * 241.72102 * 13 12 9 25 25 H 1.09000 * 109.84303 * 2.69141 * 13 12 9 26 26 H 1.09004 * 109.11601 * 174.84568 * 14 13 12 27 27 H 1.08997 * 109.11983 * 293.97953 * 14 13 12 28 28 H 1.00901 * 110.99948 * 315.61874 * 17 15 14 29 29 H 1.09005 * 109.91903 * 265.41979 * 18 17 15 30 30 H 1.08999 * 110.08349 * 144.21812 * 18 17 15 31 31 H 1.08995 * 110.36695 * 241.74418 * 19 18 17 32 32 H 1.08989 * 110.36563 * 119.42417 * 19 18 17 33 33 H 1.08995 * 109.32353 * 355.99256 * 22 12 9 34 34 H 1.08996 * 109.31937 * 115.46001 * 22 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1081 1.6935 -1.2091 5 1 1.2842 2.7464 -0.0068 6 1 3.0979 1.6993 1.2159 7 6 2.0046 -1.1941 0.0058 8 1 3.0846 -1.1940 0.0062 9 16 1.1236 -2.7200 0.0125 10 8 0.4509 -2.7895 1.2622 11 8 0.4519 -2.8010 -1.2372 12 7 2.2483 -3.9354 0.0178 13 6 2.7639 -4.4871 1.2809 14 6 2.4721 -5.9893 1.2820 15 6 3.0278 -6.6562 0.0466 16 1 2.7395 -7.7074 0.0508 17 7 4.4990 -6.5855 -0.0370 18 6 4.8195 -6.9245 -1.4448 19 6 3.5761 -6.5789 -2.2876 20 6 2.5477 -6.0124 -1.2672 21 1 1.5219 -6.2875 -1.5126 22 6 2.7571 -4.4996 -1.2346 23 1 -0.4850 0.8401 -0.0041 24 1 3.8389 -4.3190 1.3466 25 1 2.2623 -4.0122 2.1241 26 1 2.9247 -6.4403 2.1652 27 1 1.3936 -6.1435 1.3155 28 1 4.8305 -5.6616 0.1969 29 1 5.0414 -7.9883 -1.5293 30 1 5.6735 -6.3391 -1.7856 31 1 3.1812 -7.4750 -2.7662 32 1 3.8224 -5.8256 -3.0357 33 1 2.2307 -4.0463 -2.0745 34 1 3.8220 -4.2841 -1.3209 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389638440.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:03 Heat of formation + Delta-G solvation = -119.252443 kcal Electronic energy + Delta-G solvation = -18791.474544 eV Core-core repulsion = 15848.863645 eV Total energy + Delta-G solvation = -2942.610899 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 260.098 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.03832 -37.49832 -36.48494 -36.14933 -35.17776 -33.22601 -30.97509 -28.96442 -28.27100 -25.26118 -24.20423 -21.79761 -20.85136 -20.34813 -18.81611 -18.42363 -17.26310 -16.94770 -16.65941 -16.24081 -15.99705 -15.44015 -15.22863 -14.74365 -14.41462 -13.99592 -13.74751 -13.45984 -13.23637 -13.02227 -12.90214 -12.53349 -12.52959 -12.42731 -12.41268 -12.34414 -12.03890 -11.70663 -11.47720 -11.26572 -11.25703 -10.99106 -9.81234 -9.50986 -8.76569 -7.51540 0.27477 1.31546 1.33718 1.46932 2.18308 2.55134 2.79693 3.28271 3.67319 3.71099 3.83313 3.93686 4.09589 4.20802 4.25570 4.38009 4.41603 4.45283 4.53072 4.63727 4.78512 4.90819 4.98811 5.07063 5.09554 5.14246 5.21725 5.26683 5.28682 5.38678 5.86789 5.87311 5.95202 6.45483 6.75309 8.18131 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.033500 B = 0.006878 C = 0.006622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.618695 B = 4070.246433 C = 4227.082914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.069 3.931 3 Si 0.989 3.011 4 H -0.250 1.250 5 H -0.263 1.263 6 H -0.249 1.249 7 C -1.043 5.043 8 H 0.118 0.882 9 S 2.720 3.280 10 O -1.039 7.039 11 O -1.042 7.042 12 N -1.007 6.007 13 C 0.114 3.886 14 C -0.124 4.124 15 C 0.087 3.913 16 H 0.089 0.911 17 N -0.665 5.665 18 C 0.041 3.959 19 C -0.142 4.142 20 C -0.139 4.139 21 H 0.079 0.921 22 C 0.125 3.875 23 H 0.299 0.701 24 H 0.088 0.912 25 H 0.077 0.923 26 H 0.102 0.898 27 H 0.060 0.940 28 H 0.336 0.664 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.999 -10.619 -1.616 15.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.144 4.144 3 Si 0.807 3.193 4 H -0.174 1.174 5 H -0.187 1.187 6 H -0.173 1.173 7 C -1.177 5.177 8 H 0.136 0.864 9 S 2.822 3.178 10 O -1.029 7.029 11 O -1.032 7.032 12 N -0.845 5.845 13 C -0.011 4.011 14 C -0.163 4.163 15 C -0.023 4.023 16 H 0.107 0.893 17 N -0.293 5.293 18 C -0.089 4.089 19 C -0.181 4.181 20 C -0.161 4.161 21 H 0.097 0.903 22 C 0.000 4.000 23 H 0.109 0.891 24 H 0.106 0.894 25 H 0.096 0.904 26 H 0.120 0.880 27 H 0.079 0.921 28 H 0.153 0.847 29 H 0.104 0.896 30 H 0.096 0.904 31 H 0.102 0.898 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 10.050 -11.354 -1.287 15.218 hybrid contribution -0.080 2.059 -0.592 2.144 sum 9.971 -9.295 -1.878 13.760 Atomic orbital electron populations 1.69989 1.08813 1.32422 1.41460 1.26048 0.95380 1.05433 0.87513 0.85179 0.78828 0.74500 0.80794 1.17377 1.18706 1.17274 1.31001 1.07122 1.12838 1.66698 0.86358 0.99953 0.72746 0.73671 0.71406 1.93288 1.74423 1.88346 1.46894 1.93283 1.74562 1.88328 1.47041 1.57689 1.61915 1.52784 1.12082 1.21562 1.00187 0.94486 0.84875 1.21428 1.01368 0.94374 0.99156 1.21700 0.88337 0.99643 0.92611 0.89259 1.63111 1.10024 1.33515 1.22690 1.22880 0.96959 1.02482 0.86535 1.23050 0.95432 1.01744 0.97913 1.23048 1.00504 0.94487 0.98110 0.90251 1.21335 0.99532 0.93946 0.85209 0.89080 0.89375 0.90433 0.88013 0.92146 0.84707 0.89570 0.90443 0.89817 0.90624 0.91379 0.90528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.06 13.19 21.45 0.28 -53.77 16 2 C 0.07 3.87 5.46 84.66 0.46 4.33 16 3 Si 0.99 41.36 29.54 68.60 2.03 43.39 16 4 H -0.25 -9.80 7.11 99.48 0.71 -9.09 16 5 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 6 H -0.25 -9.75 7.11 99.48 0.71 -9.04 16 7 C -1.04 -57.94 9.75 67.74 0.66 -57.28 16 8 H 0.12 5.90 7.81 -2.91 -0.02 5.88 16 9 S 2.72 148.00 5.02 -56.49 -0.28 147.71 16 10 O -1.04 -62.40 16.69 -128.00 -2.14 -64.53 16 11 O -1.04 -62.87 16.64 -128.00 -2.13 -65.00 16 12 N -1.01 -40.19 3.26 -514.64 -1.68 -41.86 16 13 C 0.11 3.72 6.20 86.26 0.54 4.25 16 14 C -0.12 -3.33 5.77 29.95 0.17 -3.16 16 15 C 0.09 2.12 2.96 44.47 0.13 2.25 16 16 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 17 N -0.67 -14.16 7.25 -486.43 -3.53 -17.68 16 18 C 0.04 0.73 7.38 86.42 0.64 1.37 16 19 C -0.14 -2.83 6.20 31.86 0.20 -2.63 16 20 C -0.14 -3.77 3.74 -9.66 -0.04 -3.81 16 21 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 22 C 0.13 4.20 5.15 86.30 0.44 4.64 16 23 H 0.30 16.22 8.31 -92.71 -0.77 15.45 16 24 H 0.09 2.36 7.06 -2.39 -0.02 2.34 16 25 H 0.08 2.83 7.03 -2.39 -0.02 2.81 16 26 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 27 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.34 7.22 6.76 -89.69 -0.61 6.62 16 29 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 30 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.08 1.47 7.75 -2.39 -0.02 1.45 16 33 H 0.07 2.60 6.94 -2.39 -0.02 2.58 16 34 H 0.08 2.17 7.33 -2.39 -0.02 2.15 16 Total: -1.00 -74.31 281.51 -3.74 -78.05 By element: Atomic # 1 Polarization: 23.23 SS G_CDS: 0.50 Total: 23.73 kcal Atomic # 6 Polarization: -53.24 SS G_CDS: 3.21 Total: -50.03 kcal Atomic # 7 Polarization: -108.40 SS G_CDS: -4.92 Total: -113.32 kcal Atomic # 8 Polarization: -125.27 SS G_CDS: -4.27 Total: -129.53 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.39 kcal Atomic # 16 Polarization: 148.00 SS G_CDS: -0.28 Total: 147.71 kcal Total: -74.31 -3.74 -78.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389638440.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.198 kcal (2) G-P(sol) polarization free energy of solvation -74.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds