Wall clock time and date at job start Mon Mar 30 2020 04:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86801 * 119.99738 * 2 1 4 4 H 1.48502 * 109.46880 * 269.99666 * 3 2 1 5 5 H 1.48497 * 109.47235 * 29.99407 * 3 2 1 6 6 H 1.48500 * 109.46835 * 149.99777 * 3 2 1 7 7 C 1.37872 * 120.00086 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00240 * 180.02562 * 7 2 1 9 9 S 1.76204 * 120.00094 * 359.97438 * 7 2 1 10 10 O 1.42105 * 106.39972 * 66.46285 * 9 7 2 11 11 O 1.42098 * 106.40426 * 293.54457 * 9 7 2 12 12 N 1.65595 * 107.21987 * 180.02562 * 9 7 2 13 13 C 1.47172 * 121.05619 * 269.72312 * 12 9 7 14 14 C 1.52761 * 107.24526 * 238.88631 * 13 12 9 15 15 C 1.50995 * 110.76921 * 304.38031 * 14 13 12 16 16 H 1.08999 * 108.23884 * 176.51352 * 15 14 13 17 17 N 1.49190 * 113.91954 * 297.68406 * 15 14 13 18 18 C 1.48308 * 105.21771 * 164.07485 * 17 15 14 19 19 C 1.54131 * 107.06041 * 335.28291 * 18 17 15 20 20 C 1.53966 * 113.50209 * 55.47621 * 15 14 13 21 21 H 1.09002 * 112.33400 * 75.55620 * 20 15 14 22 22 C 1.46482 * 121.05205 * 90.00221 * 12 9 7 23 23 H 0.97000 * 120.00093 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.83682 * 357.32902 * 13 12 9 25 25 H 1.08999 * 109.83951 * 118.30176 * 13 12 9 26 26 H 1.09000 * 108.58314 * 184.57016 * 14 13 12 27 27 H 1.09000 * 110.10605 * 65.16622 * 14 13 12 28 28 H 1.00899 * 110.92340 * 284.17798 * 17 15 14 29 29 H 1.09005 * 109.91406 * 215.93368 * 18 17 15 30 30 H 1.08993 * 110.08195 * 94.73053 * 18 17 15 31 31 H 1.09007 * 110.36361 * 240.57195 * 19 18 17 32 32 H 1.09002 * 110.36619 * 118.26007 * 19 18 17 33 33 H 1.09002 * 109.32394 * 244.53076 * 22 12 9 34 34 H 1.09000 * 109.32203 * 3.98383 * 22 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 16 1.1236 -2.7200 0.0019 10 8 0.4511 -2.7961 -1.2476 11 8 0.4519 -2.7945 1.2519 12 7 2.2483 -3.9354 0.0030 13 6 2.7596 -4.4979 -1.2573 14 6 2.4402 -5.9917 -1.2489 15 6 3.0107 -6.6544 -0.0180 16 1 2.7069 -7.7012 -0.0222 17 7 4.4983 -6.5855 0.0717 18 6 4.8192 -6.9169 1.4812 19 6 3.5760 -6.5666 2.3223 20 6 2.5474 -6.0055 1.2992 21 1 1.5207 -6.2698 1.5525 22 6 2.7615 -4.4888 1.2584 23 1 -0.4850 0.8400 -0.0004 24 1 2.2551 -4.0299 -2.1027 25 1 3.8343 -4.3307 -1.3279 26 1 2.8813 -6.4462 -2.1360 27 1 1.3611 -6.1443 -1.2688 28 1 4.9283 -7.2431 -0.5613 29 1 5.6724 -6.3272 1.8163 30 1 5.0430 -7.9796 1.5741 31 1 3.8226 -5.8092 3.0665 32 1 3.1811 -7.4602 2.8059 33 1 3.8268 -4.2727 1.3391 34 1 2.2383 -4.0280 2.0962 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389638441.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:06 Heat of formation + Delta-G solvation = -88.260291 kcal Electronic energy + Delta-G solvation = -18745.454376 eV Core-core repulsion = 15804.187397 eV Total energy + Delta-G solvation = -2941.266979 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 260.098 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.53317 -35.27500 -35.08036 -33.87299 -33.00321 -31.98543 -29.91366 -27.87152 -26.04763 -23.62811 -22.81269 -20.79157 -19.21221 -18.57720 -16.96108 -16.54260 -16.14204 -15.29446 -15.04162 -14.58600 -14.18331 -13.84206 -13.47088 -13.12993 -12.96813 -12.63212 -11.97525 -11.93224 -11.63691 -11.61165 -11.25165 -11.17687 -11.05695 -10.76593 -10.61082 -10.55713 -10.33943 -10.21006 -9.89112 -9.75255 -9.19339 -8.84790 -8.50392 -7.97987 -6.63545 -5.24914 2.36584 3.10538 3.16959 3.24256 4.11238 4.19182 4.57877 4.69321 4.72821 4.88335 5.04352 5.18735 5.40276 5.47837 5.62353 5.71132 5.77827 5.82314 5.93217 5.98844 6.04150 6.09540 6.16860 6.29501 6.34417 6.41460 6.61529 6.65217 6.84416 7.03704 7.36151 7.39386 7.72575 8.05820 8.95479 10.29658 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.033464 B = 0.006853 C = 0.006597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.512899 B = 4084.912523 C = 4243.482835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.132 3.868 3 Si 0.919 3.081 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.263 1.263 7 C -1.020 5.020 8 H 0.102 0.898 9 S 2.717 3.283 10 O -1.006 7.006 11 O -1.006 7.006 12 N -1.010 6.010 13 C 0.134 3.866 14 C -0.118 4.118 15 C 0.082 3.918 16 H 0.035 0.965 17 N -0.662 5.662 18 C 0.042 3.958 19 C -0.130 4.130 20 C -0.102 4.102 21 H 0.088 0.912 22 C 0.141 3.859 23 H 0.290 0.710 24 H 0.086 0.914 25 H 0.070 0.930 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.332 0.668 29 H 0.076 0.924 30 H 0.036 0.964 31 H 0.077 0.923 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.593 -11.992 1.225 14.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.085 4.085 3 Si 0.743 3.257 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.187 1.187 7 C -1.153 5.153 8 H 0.120 0.880 9 S 2.818 3.182 10 O -0.996 6.996 11 O -0.997 6.997 12 N -0.844 5.844 13 C 0.007 3.993 14 C -0.157 4.157 15 C -0.028 4.028 16 H 0.053 0.947 17 N -0.291 5.291 18 C -0.087 4.087 19 C -0.169 4.169 20 C -0.122 4.122 21 H 0.106 0.894 22 C 0.014 3.986 23 H 0.100 0.900 24 H 0.104 0.896 25 H 0.088 0.912 26 H 0.084 0.916 27 H 0.090 0.910 28 H 0.147 0.853 29 H 0.094 0.906 30 H 0.055 0.945 31 H 0.096 0.904 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 7.548 -11.303 1.277 13.651 hybrid contribution 0.882 0.107 0.073 0.891 sum 8.429 -11.196 1.350 14.079 Atomic orbital electron populations 1.69904 1.06771 1.30613 1.40504 1.24755 0.94440 1.00779 0.88529 0.86191 0.80216 0.80149 0.79156 1.19203 1.20020 1.18665 1.30678 1.06199 1.12011 1.66424 0.87985 1.00400 0.72122 0.72954 0.72699 1.93341 1.72834 1.87645 1.45785 1.93337 1.72905 1.87653 1.45790 1.58082 1.62381 1.53935 1.10051 1.21107 0.99600 0.92061 0.86483 1.21296 1.00766 0.97383 0.96290 1.21895 0.87897 0.97087 0.95898 0.94724 1.63274 1.07392 1.53760 1.04675 1.22662 0.98432 0.98347 0.89286 1.22721 0.95042 1.01026 0.98103 1.22457 0.98716 0.97252 0.93822 0.89413 1.21071 0.99444 0.91345 0.86729 0.89983 0.89562 0.91178 0.91628 0.91004 0.85267 0.90565 0.94546 0.90429 0.91729 0.91870 0.89679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.39 13.19 55.43 0.73 -24.66 16 2 C 0.13 3.77 5.46 -17.82 -0.10 3.68 16 3 Si 0.92 21.00 29.54 -169.99 -5.02 15.98 16 4 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 5 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 6 H -0.26 -5.80 7.11 56.52 0.40 -5.40 16 7 C -1.02 -28.81 9.75 30.60 0.30 -28.51 16 8 H 0.10 2.68 7.81 -52.49 -0.41 2.27 16 9 S 2.72 73.61 5.02 -107.50 -0.54 73.07 16 10 O -1.01 -29.64 16.68 -57.17 -0.95 -30.59 16 11 O -1.01 -29.67 16.65 -57.17 -0.95 -30.62 16 12 N -1.01 -21.15 3.24 -113.89 -0.37 -21.52 16 13 C 0.13 2.39 6.36 -3.80 -0.02 2.37 16 14 C -0.12 -1.73 5.82 -27.86 -0.16 -1.89 16 15 C 0.08 1.09 2.92 -66.94 -0.20 0.89 16 16 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 17 N -0.66 -7.93 6.98 -103.90 -0.72 -8.65 16 18 C 0.04 0.45 7.39 -2.45 -0.02 0.43 16 19 C -0.13 -1.50 6.21 -24.78 -0.15 -1.66 16 20 C -0.10 -1.50 3.71 -88.64 -0.33 -1.82 16 21 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 22 C 0.14 2.54 5.32 -3.94 -0.02 2.52 16 23 H 0.29 7.79 8.31 -40.82 -0.34 7.45 16 24 H 0.09 1.64 7.02 -51.93 -0.36 1.28 16 25 H 0.07 1.17 8.12 -51.93 -0.42 0.75 16 26 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.33 3.28 8.92 -39.29 -0.35 2.93 16 29 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.08 0.87 7.75 -51.93 -0.40 0.47 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.06 1.08 7.69 -51.93 -0.40 0.68 16 34 H 0.08 1.65 6.95 -51.93 -0.36 1.29 16 LS Contribution 285.12 15.07 4.30 4.30 Total: -1.00 -34.60 285.12 -9.04 -43.64 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -4.80 Total: 3.05 kcal Atomic # 6 Polarization: -23.29 SS G_CDS: -0.70 Total: -23.99 kcal Atomic # 7 Polarization: -54.47 SS G_CDS: -0.36 Total: -54.84 kcal Atomic # 8 Polarization: -59.31 SS G_CDS: -1.91 Total: -61.21 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: 73.61 SS G_CDS: -0.54 Total: 73.07 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -34.60 -9.04 -43.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389638441.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.622 kcal (2) G-P(sol) polarization free energy of solvation -34.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds