Wall clock time and date at job start Mon Mar 30 2020 04:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86801 * 119.99738 * 2 1 4 4 H 1.48502 * 109.46880 * 269.99666 * 3 2 1 5 5 H 1.48497 * 109.47235 * 29.99407 * 3 2 1 6 6 H 1.48500 * 109.46835 * 149.99777 * 3 2 1 7 7 C 1.37872 * 120.00086 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00240 * 180.02562 * 7 2 1 9 9 S 1.76204 * 120.00094 * 359.97438 * 7 2 1 10 10 O 1.42105 * 106.39972 * 66.46285 * 9 7 2 11 11 O 1.42098 * 106.40426 * 293.54457 * 9 7 2 12 12 N 1.65595 * 107.21987 * 180.02562 * 9 7 2 13 13 C 1.47172 * 121.05619 * 269.72312 * 12 9 7 14 14 C 1.52761 * 107.24526 * 238.88631 * 13 12 9 15 15 C 1.50995 * 110.76921 * 304.38031 * 14 13 12 16 16 H 1.08999 * 108.23884 * 176.51352 * 15 14 13 17 17 N 1.49190 * 113.91954 * 297.68406 * 15 14 13 18 18 C 1.48308 * 105.21771 * 164.07485 * 17 15 14 19 19 C 1.54131 * 107.06041 * 335.28291 * 18 17 15 20 20 C 1.53966 * 113.50209 * 55.47621 * 15 14 13 21 21 H 1.09002 * 112.33400 * 75.55620 * 20 15 14 22 22 C 1.46482 * 121.05205 * 90.00221 * 12 9 7 23 23 H 0.97000 * 120.00093 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.83682 * 357.32902 * 13 12 9 25 25 H 1.08999 * 109.83951 * 118.30176 * 13 12 9 26 26 H 1.09000 * 108.58314 * 184.57016 * 14 13 12 27 27 H 1.09000 * 110.10605 * 65.16622 * 14 13 12 28 28 H 1.00899 * 110.92340 * 284.17798 * 17 15 14 29 29 H 1.09005 * 109.91406 * 215.93368 * 18 17 15 30 30 H 1.08993 * 110.08195 * 94.73053 * 18 17 15 31 31 H 1.09007 * 110.36361 * 240.57195 * 19 18 17 32 32 H 1.09002 * 110.36619 * 118.26007 * 19 18 17 33 33 H 1.09002 * 109.32394 * 244.53076 * 22 12 9 34 34 H 1.09000 * 109.32203 * 3.98383 * 22 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 16 1.1236 -2.7200 0.0019 10 8 0.4511 -2.7961 -1.2476 11 8 0.4519 -2.7945 1.2519 12 7 2.2483 -3.9354 0.0030 13 6 2.7596 -4.4979 -1.2573 14 6 2.4402 -5.9917 -1.2489 15 6 3.0107 -6.6544 -0.0180 16 1 2.7069 -7.7012 -0.0222 17 7 4.4983 -6.5855 0.0717 18 6 4.8192 -6.9169 1.4812 19 6 3.5760 -6.5666 2.3223 20 6 2.5474 -6.0055 1.2992 21 1 1.5207 -6.2698 1.5525 22 6 2.7615 -4.4888 1.2584 23 1 -0.4850 0.8400 -0.0004 24 1 2.2551 -4.0299 -2.1027 25 1 3.8343 -4.3307 -1.3279 26 1 2.8813 -6.4462 -2.1360 27 1 1.3611 -6.1443 -1.2688 28 1 4.9283 -7.2431 -0.5613 29 1 5.6724 -6.3272 1.8163 30 1 5.0430 -7.9796 1.5741 31 1 3.8226 -5.8092 3.0665 32 1 3.1811 -7.4602 2.8059 33 1 3.8268 -4.2727 1.3391 34 1 2.2383 -4.0280 2.0962 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389638441.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:06 Heat of formation + Delta-G solvation = -116.944243 kcal Electronic energy + Delta-G solvation = -18746.698205 eV Core-core repulsion = 15804.187397 eV Total energy + Delta-G solvation = -2942.510808 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 260.098 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.66028 -37.45458 -36.47803 -36.11198 -35.15569 -33.19339 -31.09070 -28.97343 -28.24662 -25.02324 -24.04818 -21.77948 -20.80944 -20.36508 -18.74026 -18.27779 -17.48169 -17.00567 -16.75943 -15.96343 -15.86785 -15.39312 -14.99775 -14.52972 -14.28653 -13.97316 -13.86821 -13.31977 -13.09088 -13.01553 -12.89452 -12.71331 -12.49631 -12.48215 -12.31314 -12.30896 -12.07689 -11.74570 -11.37721 -11.25632 -11.19291 -10.95245 -9.74932 -9.25885 -8.73937 -7.48657 0.33965 1.32272 1.33165 1.49459 2.20429 2.56764 2.87654 3.25665 3.64666 3.75735 3.82062 4.06852 4.17933 4.23093 4.33214 4.38992 4.47486 4.56779 4.62891 4.75134 4.88571 4.90488 4.99173 5.05850 5.07340 5.17568 5.24914 5.27685 5.39395 5.50338 5.89115 5.91320 6.05301 6.59618 6.77660 8.20505 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.033464 B = 0.006853 C = 0.006597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.512899 B = 4084.912523 C = 4243.482835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.069 3.931 3 Si 0.989 3.011 4 H -0.253 1.253 5 H -0.261 1.261 6 H -0.249 1.249 7 C -1.043 5.043 8 H 0.115 0.885 9 S 2.719 3.281 10 O -1.041 7.041 11 O -1.042 7.042 12 N -1.006 6.006 13 C 0.127 3.873 14 C -0.116 4.116 15 C 0.085 3.915 16 H 0.058 0.942 17 N -0.672 5.672 18 C 0.045 3.955 19 C -0.125 4.125 20 C -0.110 4.110 21 H 0.079 0.921 22 C 0.136 3.864 23 H 0.299 0.701 24 H 0.067 0.933 25 H 0.086 0.914 26 H 0.097 0.903 27 H 0.059 0.941 28 H 0.347 0.653 29 H 0.079 0.921 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.027 -12.883 1.284 17.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.144 4.144 3 Si 0.807 3.193 4 H -0.177 1.177 5 H -0.185 1.185 6 H -0.172 1.172 7 C -1.177 5.177 8 H 0.133 0.867 9 S 2.822 3.178 10 O -1.031 7.031 11 O -1.032 7.032 12 N -0.844 5.844 13 C 0.002 3.998 14 C -0.156 4.156 15 C -0.024 4.024 16 H 0.076 0.924 17 N -0.303 5.303 18 C -0.084 4.084 19 C -0.164 4.164 20 C -0.131 4.131 21 H 0.097 0.903 22 C 0.011 3.989 23 H 0.109 0.891 24 H 0.085 0.915 25 H 0.105 0.895 26 H 0.115 0.885 27 H 0.077 0.923 28 H 0.164 0.836 29 H 0.097 0.903 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.103 0.897 33 H 0.094 0.906 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 9.981 -12.222 1.333 15.836 hybrid contribution 0.147 0.305 0.054 0.343 sum 10.129 -11.917 1.387 15.701 Atomic orbital electron populations 1.69993 1.08767 1.32310 1.41659 1.26045 0.95398 1.05412 0.87512 0.85146 0.79138 0.74808 0.80181 1.17687 1.18457 1.17217 1.31045 1.07035 1.13068 1.66507 0.86670 0.99934 0.72786 0.73689 0.71410 1.93281 1.74537 1.88369 1.46895 1.93276 1.74625 1.88379 1.46951 1.57620 1.61627 1.52775 1.12400 1.21363 1.00037 0.94127 0.84271 1.21287 1.00518 0.95028 0.98749 1.21784 0.88952 0.97729 0.93959 0.92450 1.63198 1.06264 1.54928 1.05880 1.22689 0.97714 0.99914 0.88118 1.22721 0.94524 1.01641 0.97469 1.22475 0.99505 0.94654 0.96435 0.90299 1.21301 0.99429 0.93716 0.84486 0.89104 0.91503 0.89530 0.88450 0.92263 0.83608 0.90310 0.92125 0.90551 0.89734 0.90619 0.91979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.97 13.19 21.45 0.28 -54.68 16 2 C 0.07 3.95 5.46 84.65 0.46 4.41 16 3 Si 0.99 42.48 29.54 68.60 2.03 44.51 16 4 H -0.25 -10.20 7.11 99.48 0.71 -9.49 16 5 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 6 H -0.25 -10.03 7.11 99.48 0.71 -9.33 16 7 C -1.04 -59.95 9.75 67.73 0.66 -59.29 16 8 H 0.12 6.06 7.81 -2.91 -0.02 6.04 16 9 S 2.72 152.73 5.02 -56.49 -0.28 152.45 16 10 O -1.04 -63.95 16.68 -128.00 -2.14 -66.08 16 11 O -1.04 -64.22 16.65 -128.00 -2.13 -66.35 16 12 N -1.01 -42.73 3.24 -514.25 -1.67 -44.40 16 13 C 0.13 4.49 6.36 86.17 0.55 5.04 16 14 C -0.12 -3.22 5.82 29.86 0.17 -3.04 16 15 C 0.09 2.05 2.92 44.14 0.13 2.17 16 16 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 17 N -0.67 -13.72 6.98 -482.64 -3.37 -17.09 16 18 C 0.04 0.78 7.39 86.41 0.64 1.42 16 19 C -0.12 -2.55 6.21 31.86 0.20 -2.35 16 20 C -0.11 -3.08 3.71 -9.51 -0.04 -3.12 16 21 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 22 C 0.14 4.92 5.32 86.46 0.46 5.38 16 23 H 0.30 16.41 8.31 -92.71 -0.77 15.64 16 24 H 0.07 2.60 7.02 -2.39 -0.02 2.59 16 25 H 0.09 2.76 8.12 -2.39 -0.02 2.74 16 26 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 27 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.35 5.42 8.92 -89.69 -0.80 4.62 16 29 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 30 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.08 1.57 7.75 -2.38 -0.02 1.55 16 32 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.08 2.51 7.69 -2.39 -0.02 2.49 16 34 H 0.06 2.49 6.95 -2.39 -0.02 2.48 16 Total: -1.00 -76.93 285.12 -3.74 -80.67 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: 0.30 Total: 20.36 kcal Atomic # 6 Polarization: -52.62 SS G_CDS: 3.23 Total: -49.38 kcal Atomic # 7 Polarization: -111.42 SS G_CDS: -4.75 Total: -116.17 kcal Atomic # 8 Polarization: -128.17 SS G_CDS: -4.27 Total: -132.43 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.51 kcal Atomic # 16 Polarization: 152.73 SS G_CDS: -0.28 Total: 152.45 kcal Total: -76.93 -3.74 -80.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389638441.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.278 kcal (2) G-P(sol) polarization free energy of solvation -76.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds