Wall clock time and date at job start Mon Mar 30 2020 04:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99576 * 2 1 4 4 H 1.48500 * 109.46986 * 90.00007 * 3 2 1 5 5 H 1.48496 * 109.47029 * 210.00024 * 3 2 1 6 6 H 1.48499 * 109.47352 * 329.99854 * 3 2 1 7 7 C 1.37871 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00147 * 179.97438 * 7 2 1 9 9 S 1.76203 * 120.00108 * 0.02562 * 7 2 1 10 10 O 1.42098 * 106.39933 * 293.53688 * 9 7 2 11 11 O 1.42094 * 106.40234 * 66.46173 * 9 7 2 12 12 N 1.65606 * 107.21543 * 180.02562 * 9 7 2 13 13 C 1.46496 * 120.00080 * 65.00058 * 12 9 7 14 14 H 1.09003 * 115.55555 * 0.58453 * 13 12 9 15 15 C 1.53037 * 117.50449 * 146.28151 * 13 12 9 16 16 C 1.52756 * 117.50806 * 214.87681 * 13 12 9 17 17 C 1.53220 * 117.79696 * 144.70419 * 16 13 12 18 18 C 1.53256 * 108.62003 * 266.00884 * 17 16 13 19 19 N 1.46805 * 109.44624 * 304.40434 * 18 17 16 20 20 C 1.46810 * 111.57736 * 64.83079 * 19 18 17 21 21 C 1.53221 * 117.79169 * 0.35436 * 16 13 12 22 22 H 0.97005 * 119.99661 * 179.97438 * 1 2 3 23 23 H 0.97002 * 119.99715 * 244.99994 * 12 9 7 24 24 H 1.09006 * 117.50475 * 214.94501 * 15 13 12 25 25 H 1.09000 * 117.50367 * 359.96627 * 15 13 12 26 26 H 1.09003 * 109.60522 * 25.75066 * 17 16 13 27 27 H 1.08997 * 109.61349 * 146.26232 * 17 16 13 28 28 H 1.09009 * 109.47719 * 184.41319 * 18 17 16 29 29 H 1.09004 * 109.47887 * 64.39761 * 18 17 16 30 30 H 1.00906 * 110.99944 * 189.20095 * 19 18 17 31 31 H 1.09000 * 109.48139 * 175.18004 * 20 19 18 32 32 H 1.08997 * 109.47793 * 55.16511 * 20 19 18 33 33 H 1.09002 * 109.61623 * 213.73408 * 21 16 13 34 34 H 1.08999 * 109.61455 * 334.08338 * 21 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4465 2.6527 -0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 16 1.1236 -2.7200 0.0005 10 8 0.4511 -2.7950 1.2501 11 8 0.4520 -2.7956 -1.2494 12 7 2.2485 -3.9353 0.0019 13 6 3.1387 -4.1082 1.1525 14 1 2.9914 -3.4035 1.9710 15 6 3.5562 -5.5352 1.5150 16 6 4.5648 -4.5808 0.8765 17 6 5.6853 -4.0264 1.7624 18 6 6.2968 -2.8036 1.0700 19 7 6.7463 -3.1782 -0.2764 20 6 5.6188 -3.5614 -1.1350 21 6 4.9647 -4.8320 -0.5811 22 1 -0.4850 -0.8401 -0.0004 23 1 2.3180 -4.5328 -0.7591 24 1 3.6840 -5.7692 2.5719 25 1 3.1681 -6.3454 0.8977 26 1 5.2760 -3.7331 2.7291 27 1 6.4517 -4.7887 1.9029 28 1 7.1469 -2.4446 1.6502 29 1 5.5478 -2.0150 0.9967 30 1 7.2853 -2.4361 -0.6972 31 1 5.9795 -3.7495 -2.1462 32 1 4.8863 -2.7545 -1.1546 33 1 5.6732 -5.6589 -0.6289 34 1 4.0783 -5.0754 -1.1670 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389867299.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:20 Heat of formation + Delta-G solvation = -76.687258 kcal Electronic energy + Delta-G solvation = -18645.523006 eV Core-core repulsion = 15704.757871 eV Total energy + Delta-G solvation = -2940.765134 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 260.098 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.41954 -35.88117 -35.49236 -34.42200 -33.26407 -31.91023 -30.71520 -28.27056 -25.57274 -23.08673 -21.95807 -21.61448 -19.45678 -18.48175 -18.13686 -16.66176 -16.18554 -15.45964 -14.72925 -14.49705 -14.33910 -14.08511 -13.88515 -13.68993 -12.86489 -12.62724 -12.46376 -12.27736 -11.91831 -11.61448 -11.15029 -11.11525 -11.05893 -10.83040 -10.74785 -10.61244 -10.54461 -10.37039 -10.31048 -9.54489 -9.22270 -8.72333 -8.36381 -8.17644 -7.21466 -5.42825 2.08148 3.18286 3.20401 3.38577 3.97285 4.09395 4.32269 4.38111 4.67725 4.84511 4.89792 4.98956 5.06265 5.36571 5.47103 5.53232 5.60907 5.67027 5.74221 5.81751 5.91065 5.94674 5.99145 6.12347 6.17431 6.29182 6.37777 6.39011 6.74386 7.10503 7.44192 7.55569 7.70518 8.01442 8.58429 10.16378 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.019882 B = 0.009137 C = 0.007256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.995721 B = 3063.861625 C = 3857.775004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.090 3.910 3 Si 1.081 2.919 4 H -0.274 1.274 5 H -0.279 1.279 6 H -0.273 1.273 7 C -1.080 5.080 8 H 0.101 0.899 9 S 2.691 3.309 10 O -1.011 7.011 11 O -1.012 7.012 12 N -1.097 6.097 13 C 0.118 3.882 14 H 0.134 0.866 15 C -0.187 4.187 16 C -0.139 4.139 17 C -0.074 4.074 18 C 0.055 3.945 19 N -0.691 5.691 20 C 0.056 3.944 21 C -0.072 4.072 22 H 0.277 0.723 23 H 0.403 0.597 24 H 0.098 0.902 25 H 0.094 0.906 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.040 0.960 30 H 0.340 0.660 31 H 0.070 0.930 32 H 0.044 0.956 33 H 0.069 0.931 34 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.713 -6.610 1.300 14.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.128 4.128 3 Si 0.905 3.095 4 H -0.200 1.200 5 H -0.205 1.205 6 H -0.197 1.197 7 C -1.215 5.215 8 H 0.120 0.880 9 S 2.792 3.208 10 O -1.001 7.001 11 O -1.002 7.002 12 N -0.848 5.848 13 C 0.009 3.991 14 H 0.152 0.848 15 C -0.227 4.227 16 C -0.142 4.142 17 C -0.112 4.112 18 C -0.074 4.074 19 N -0.322 5.322 20 C -0.074 4.074 21 C -0.110 4.110 22 H 0.089 0.911 23 H 0.235 0.765 24 H 0.116 0.884 25 H 0.112 0.888 26 H 0.087 0.913 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.058 0.942 30 H 0.157 0.843 31 H 0.089 0.911 32 H 0.062 0.938 33 H 0.087 0.913 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 11.613 -5.691 1.623 13.034 hybrid contribution 0.421 -0.843 -0.527 1.080 sum 12.033 -6.534 1.096 13.737 Atomic orbital electron populations 1.70822 1.07196 1.32021 1.37327 1.25939 0.95125 1.03872 0.87902 0.83429 0.75003 0.73249 0.77852 1.19999 1.20469 1.19742 1.31419 1.07790 1.12368 1.69894 0.88020 1.01013 0.72659 0.74195 0.72928 1.93424 1.73280 1.87700 1.45651 1.93434 1.73526 1.87879 1.45396 1.55363 1.53905 1.50125 1.25377 1.21323 0.89845 0.97438 0.90542 0.84849 1.23498 1.03398 0.94373 1.01385 1.21998 0.91499 1.04195 0.96534 1.21151 0.96096 0.97210 0.96784 1.21946 0.98849 0.96580 0.90023 1.60162 1.23978 1.44760 1.03323 1.21937 0.92316 0.97460 0.95654 1.21048 0.99539 0.97544 0.92893 0.91135 0.76531 0.88354 0.88782 0.91336 0.91036 0.91071 0.94152 0.84325 0.91140 0.93787 0.91283 0.91650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -25.64 13.66 55.43 0.76 -24.88 16 2 C 0.09 2.53 5.46 -17.82 -0.10 2.43 16 3 Si 1.08 23.74 29.90 -169.99 -5.08 18.66 16 4 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 5 H -0.28 -5.69 7.11 56.52 0.40 -5.28 16 6 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 7 C -1.08 -29.11 9.72 30.60 0.30 -28.81 16 8 H 0.10 2.53 7.81 -52.49 -0.41 2.12 16 9 S 2.69 69.30 4.36 -107.50 -0.47 68.83 16 10 O -1.01 -28.68 17.39 -57.17 -0.99 -29.67 16 11 O -1.01 -28.76 17.64 -57.17 -1.01 -29.77 16 12 N -1.10 -21.38 5.68 -4.98 -0.03 -21.41 16 13 C 0.12 2.02 6.14 -68.04 -0.42 1.60 16 14 H 0.13 2.42 8.10 -51.93 -0.42 2.00 16 15 C -0.19 -2.55 9.93 -26.80 -0.27 -2.82 16 16 C -0.14 -1.95 2.02 -154.49 -0.31 -2.27 16 17 C -0.07 -0.93 5.87 -26.48 -0.16 -1.09 16 18 C 0.06 0.71 6.55 -3.74 -0.02 0.68 16 19 N -0.69 -8.64 6.77 -113.61 -0.77 -9.41 16 20 C 0.06 0.76 6.55 -3.73 -0.02 0.73 16 21 C -0.07 -0.97 5.67 -26.48 -0.15 -1.12 16 22 H 0.28 8.65 6.52 -40.82 -0.27 8.38 16 23 H 0.40 6.89 7.29 -34.47 -0.25 6.64 16 24 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 25 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 26 H 0.07 0.80 8.08 -51.93 -0.42 0.38 16 27 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.07 0.77 8.14 -51.92 -0.42 0.35 16 29 H 0.04 0.60 8.12 -51.93 -0.42 0.18 16 30 H 0.34 3.70 8.90 -39.29 -0.35 3.35 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.04 0.71 8.12 -51.93 -0.42 0.29 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.06 0.87 6.33 -51.93 -0.33 0.54 16 LS Contribution 292.75 15.07 4.41 4.41 Total: -1.00 -33.89 292.75 -8.95 -42.84 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -4.62 Total: 11.05 kcal Atomic # 6 Polarization: -29.49 SS G_CDS: -1.15 Total: -30.64 kcal Atomic # 7 Polarization: -55.67 SS G_CDS: -0.04 Total: -55.71 kcal Atomic # 8 Polarization: -57.44 SS G_CDS: -2.00 Total: -59.44 kcal Atomic # 14 Polarization: 23.74 SS G_CDS: -5.08 Total: 18.66 kcal Atomic # 16 Polarization: 69.30 SS G_CDS: -0.47 Total: 68.83 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -33.89 -8.95 -42.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389867299.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.845 kcal (2) G-P(sol) polarization free energy of solvation -33.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds