Wall clock time and date at job start Mon Mar 30 2020 04:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99576 * 2 1 4 4 H 1.48500 * 109.46986 * 90.00007 * 3 2 1 5 5 H 1.48496 * 109.47029 * 210.00024 * 3 2 1 6 6 H 1.48499 * 109.47352 * 329.99854 * 3 2 1 7 7 C 1.37871 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00147 * 179.97438 * 7 2 1 9 9 S 1.76203 * 120.00108 * 0.02562 * 7 2 1 10 10 O 1.42098 * 106.39933 * 293.53688 * 9 7 2 11 11 O 1.42094 * 106.40234 * 66.46173 * 9 7 2 12 12 N 1.65606 * 107.21543 * 180.02562 * 9 7 2 13 13 C 1.46496 * 120.00080 * 65.00058 * 12 9 7 14 14 H 1.09003 * 115.55555 * 0.58453 * 13 12 9 15 15 C 1.53037 * 117.50449 * 146.28151 * 13 12 9 16 16 C 1.52756 * 117.50806 * 214.87681 * 13 12 9 17 17 C 1.53220 * 117.79696 * 144.70419 * 16 13 12 18 18 C 1.53256 * 108.62003 * 266.00884 * 17 16 13 19 19 N 1.46805 * 109.44624 * 304.40434 * 18 17 16 20 20 C 1.46810 * 111.57736 * 64.83079 * 19 18 17 21 21 C 1.53221 * 117.79169 * 0.35436 * 16 13 12 22 22 H 0.97005 * 119.99661 * 179.97438 * 1 2 3 23 23 H 0.97002 * 119.99715 * 244.99994 * 12 9 7 24 24 H 1.09006 * 117.50475 * 214.94501 * 15 13 12 25 25 H 1.09000 * 117.50367 * 359.96627 * 15 13 12 26 26 H 1.09003 * 109.60522 * 25.75066 * 17 16 13 27 27 H 1.08997 * 109.61349 * 146.26232 * 17 16 13 28 28 H 1.09009 * 109.47719 * 184.41319 * 18 17 16 29 29 H 1.09004 * 109.47887 * 64.39761 * 18 17 16 30 30 H 1.00906 * 110.99944 * 189.20095 * 19 18 17 31 31 H 1.09000 * 109.48139 * 175.18004 * 20 19 18 32 32 H 1.08997 * 109.47793 * 55.16511 * 20 19 18 33 33 H 1.09002 * 109.61623 * 213.73408 * 21 16 13 34 34 H 1.08999 * 109.61455 * 334.08338 * 21 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4465 2.6527 -0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 16 1.1236 -2.7200 0.0005 10 8 0.4511 -2.7950 1.2501 11 8 0.4520 -2.7956 -1.2494 12 7 2.2485 -3.9353 0.0019 13 6 3.1387 -4.1082 1.1525 14 1 2.9914 -3.4035 1.9710 15 6 3.5562 -5.5352 1.5150 16 6 4.5648 -4.5808 0.8765 17 6 5.6853 -4.0264 1.7624 18 6 6.2968 -2.8036 1.0700 19 7 6.7463 -3.1782 -0.2764 20 6 5.6188 -3.5614 -1.1350 21 6 4.9647 -4.8320 -0.5811 22 1 -0.4850 -0.8401 -0.0004 23 1 2.3180 -4.5328 -0.7591 24 1 3.6840 -5.7692 2.5719 25 1 3.1681 -6.3454 0.8977 26 1 5.2760 -3.7331 2.7291 27 1 6.4517 -4.7887 1.9029 28 1 7.1469 -2.4446 1.6502 29 1 5.5478 -2.0150 0.9967 30 1 7.2853 -2.4361 -0.6972 31 1 5.9795 -3.7495 -2.1462 32 1 4.8863 -2.7545 -1.1546 33 1 5.6732 -5.6589 -0.6289 34 1 4.0783 -5.0754 -1.1670 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389867299.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:20 Heat of formation + Delta-G solvation = -104.884291 kcal Electronic energy + Delta-G solvation = -18646.745721 eV Core-core repulsion = 15704.757871 eV Total energy + Delta-G solvation = -2941.987849 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 260.098 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.56663 -37.74475 -36.96965 -36.60178 -35.40424 -33.36496 -31.77714 -29.37227 -27.74520 -24.13536 -23.22752 -22.71028 -21.53530 -20.01566 -19.64967 -18.30328 -17.66138 -16.95839 -16.76095 -15.91607 -15.70744 -15.54601 -15.42135 -15.09793 -14.44984 -13.92868 -13.81514 -13.39848 -13.16784 -13.09911 -13.02524 -12.82860 -12.78998 -12.72362 -12.69031 -12.09446 -12.01614 -11.95845 -11.33824 -11.23745 -10.78908 -10.60523 -9.75272 -9.41504 -9.36849 -7.65605 0.09386 1.41441 1.46578 1.70304 2.28287 2.55213 2.59626 2.81163 3.33768 3.36766 3.72770 3.74903 3.85595 3.98383 4.18594 4.27511 4.34704 4.50913 4.59652 4.65994 4.68747 4.86714 4.93221 4.94193 5.09329 5.16845 5.24926 5.33522 5.35323 5.45099 5.77758 6.06883 6.18578 6.45777 6.51646 7.91895 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.019882 B = 0.009137 C = 0.007256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.995721 B = 3063.861625 C = 3857.775004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.036 3.964 3 Si 1.121 2.879 4 H -0.253 1.253 5 H -0.253 1.253 6 H -0.267 1.267 7 C -1.089 5.089 8 H 0.117 0.883 9 S 2.701 3.299 10 O -1.044 7.044 11 O -1.046 7.046 12 N -1.081 6.081 13 C 0.071 3.929 14 H 0.116 0.884 15 C -0.163 4.163 16 C -0.124 4.124 17 C -0.075 4.075 18 C 0.052 3.948 19 N -0.684 5.684 20 C 0.054 3.946 21 C -0.075 4.075 22 H 0.256 0.744 23 H 0.414 0.586 24 H 0.120 0.880 25 H 0.105 0.895 26 H 0.074 0.926 27 H 0.090 0.910 28 H 0.094 0.906 29 H 0.013 0.987 30 H 0.349 0.651 31 H 0.087 0.913 32 H 0.011 0.989 33 H 0.088 0.912 34 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.596 -7.228 1.649 17.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.174 4.174 3 Si 0.935 3.065 4 H -0.177 1.177 5 H -0.177 1.177 6 H -0.192 1.192 7 C -1.223 5.223 8 H 0.135 0.865 9 S 2.803 3.197 10 O -1.033 7.033 11 O -1.036 7.036 12 N -0.837 5.837 13 C -0.038 4.038 14 H 0.134 0.866 15 C -0.203 4.203 16 C -0.126 4.126 17 C -0.113 4.113 18 C -0.077 4.077 19 N -0.316 5.316 20 C -0.075 4.075 21 C -0.113 4.113 22 H 0.067 0.933 23 H 0.250 0.750 24 H 0.138 0.862 25 H 0.124 0.876 26 H 0.093 0.907 27 H 0.109 0.891 28 H 0.112 0.888 29 H 0.031 0.969 30 H 0.167 0.833 31 H 0.105 0.895 32 H 0.030 0.970 33 H 0.106 0.894 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 14.508 -6.342 1.970 15.956 hybrid contribution -0.399 -0.762 -0.623 1.062 sum 14.109 -7.104 1.348 15.854 Atomic orbital electron populations 1.70975 1.08503 1.30739 1.40494 1.27743 0.95068 1.08317 0.86314 0.83053 0.74849 0.69102 0.79521 1.17712 1.17665 1.19164 1.31750 1.08749 1.13120 1.68696 0.86490 1.00340 0.73016 0.74732 0.71623 1.93372 1.74741 1.88378 1.46850 1.93374 1.75105 1.88581 1.46558 1.54672 1.53468 1.48719 1.26881 1.21546 0.92156 1.00238 0.89814 0.86638 1.23632 1.01284 0.92412 1.02954 1.22119 0.90246 1.02810 0.97465 1.21234 0.95911 0.97518 0.96661 1.22009 0.99068 0.96026 0.90595 1.60198 1.23174 1.45124 1.03102 1.21940 0.92058 0.96550 0.96988 1.21123 0.99913 0.97997 0.92295 0.93289 0.75034 0.86215 0.87631 0.90714 0.89133 0.88766 0.96883 0.83270 0.89489 0.97047 0.89366 0.91932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -54.70 13.66 21.45 0.29 -54.41 16 2 C 0.04 2.04 5.46 84.65 0.46 2.50 16 3 Si 1.12 46.72 29.90 68.60 2.05 48.78 16 4 H -0.25 -9.63 7.11 99.48 0.71 -8.92 16 5 H -0.25 -9.38 7.11 99.48 0.71 -8.67 16 6 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 7 C -1.09 -59.50 9.72 67.73 0.66 -58.84 16 8 H 0.12 5.85 7.81 -2.91 -0.02 5.83 16 9 S 2.70 143.04 4.36 -56.49 -0.25 142.79 16 10 O -1.04 -61.29 17.39 -128.00 -2.23 -63.52 16 11 O -1.05 -61.41 17.64 -128.00 -2.26 -63.67 16 12 N -1.08 -42.27 5.68 -169.68 -0.96 -43.23 16 13 C 0.07 2.37 6.14 44.92 0.28 2.64 16 14 H 0.12 4.24 8.10 -2.39 -0.02 4.22 16 15 C -0.16 -4.02 9.93 30.55 0.30 -3.72 16 16 C -0.12 -3.18 2.02 -52.17 -0.11 -3.28 16 17 C -0.08 -1.67 5.87 30.75 0.18 -1.49 16 18 C 0.05 1.22 6.55 86.41 0.57 1.78 16 19 N -0.68 -15.32 6.77 -513.36 -3.48 -18.79 16 20 C 0.05 1.38 6.55 86.41 0.57 1.94 16 21 C -0.08 -1.83 5.67 30.76 0.17 -1.65 16 22 H 0.26 16.74 6.52 -92.70 -0.60 16.13 16 23 H 0.41 14.08 7.29 -96.74 -0.71 13.37 16 24 H 0.12 2.46 8.14 -2.38 -0.02 2.44 16 25 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 26 H 0.07 1.56 8.08 -2.39 -0.02 1.54 16 27 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 29 H 0.01 0.37 8.12 -2.38 -0.02 0.35 16 30 H 0.35 6.71 8.90 -89.69 -0.80 5.92 16 31 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.01 0.36 8.12 -2.39 -0.02 0.34 16 33 H 0.09 1.85 8.14 -2.39 -0.02 1.84 16 34 H 0.06 1.54 6.33 -2.39 -0.02 1.52 16 Total: -1.00 -74.76 292.75 -3.96 -78.72 By element: Atomic # 1 Polarization: 33.66 SS G_CDS: -0.22 Total: 33.44 kcal Atomic # 6 Polarization: -63.19 SS G_CDS: 3.08 Total: -60.11 kcal Atomic # 7 Polarization: -112.29 SS G_CDS: -4.15 Total: -116.44 kcal Atomic # 8 Polarization: -122.70 SS G_CDS: -4.48 Total: -127.18 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.05 Total: 48.78 kcal Atomic # 16 Polarization: 143.04 SS G_CDS: -0.25 Total: 142.79 kcal Total: -74.76 -3.96 -78.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389867299.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.160 kcal (2) G-P(sol) polarization free energy of solvation -74.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds