Wall clock time and date at job start Mon Mar 30 2020 04:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86799 * 120.00126 * 2 1 4 4 H 1.48501 * 109.46727 * 240.00007 * 3 2 1 5 5 H 1.48499 * 109.46993 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47117 * 119.99925 * 3 2 1 7 7 C 1.37883 * 119.99546 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99413 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00031 * 0.02562 * 7 2 1 10 10 O 1.42901 * 109.47039 * 180.02562 * 9 7 2 11 11 C 1.42901 * 114.00110 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47175 * 179.97438 * 11 10 9 13 13 S 1.81400 * 109.47130 * 180.02562 * 12 11 10 14 14 O 1.42097 * 109.47048 * 63.61742 * 13 12 11 15 15 C 1.81399 * 102.99964 * 180.02562 * 13 12 11 16 16 C 1.53002 * 109.47404 * 179.97438 * 15 13 12 17 17 C 1.55238 * 110.58012 * 289.87798 * 16 15 13 18 18 C 1.54894 * 102.58338 * 203.33342 * 17 16 15 19 19 C 1.54266 * 104.31305 * 37.93170 * 18 17 16 20 20 C 1.53869 * 106.60031 * 336.32486 * 19 18 17 21 21 H 0.97004 * 119.99318 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.47695 * 59.99766 * 9 7 2 23 23 H 1.09003 * 109.47653 * 299.99794 * 9 7 2 24 24 H 1.09009 * 109.46958 * 60.00339 * 11 10 9 25 25 H 1.08993 * 109.47496 * 300.00415 * 11 10 9 26 26 H 1.08997 * 109.47196 * 60.00191 * 12 11 10 27 27 H 1.09002 * 109.47158 * 300.00248 * 12 11 10 28 28 H 1.09008 * 109.47188 * 60.00033 * 15 13 12 29 29 H 1.09000 * 109.47721 * 300.00289 * 15 13 12 30 30 H 1.09006 * 110.43291 * 52.46048 * 16 15 13 31 31 H 1.08996 * 110.89448 * 85.04906 * 17 16 15 32 32 H 1.08993 * 110.76342 * 321.56571 * 17 16 15 33 33 H 1.09002 * 110.48891 * 279.18596 * 18 17 16 34 34 H 1.08998 * 110.48494 * 156.67683 * 18 17 16 35 35 H 1.09001 * 110.03084 * 95.60669 * 19 18 17 36 36 H 1.08996 * 110.03108 * 216.98559 * 19 18 17 37 37 H 1.08999 * 110.04012 * 119.28327 * 20 19 18 38 38 H 1.09006 * 110.02998 * 240.67078 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1942 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 8 2.1795 -3.5854 0.0017 11 6 1.5649 -4.8755 0.0024 12 6 2.6478 -5.9563 0.0030 13 16 1.8676 -7.5939 0.0032 14 8 1.1269 -7.7657 -1.1972 15 6 3.2878 -8.7225 0.0047 16 6 2.7897 -10.1692 0.0056 17 6 2.1441 -10.5232 1.3723 18 6 2.2701 -12.0664 1.4153 19 6 3.6447 -12.3548 0.7773 20 6 3.9751 -11.1485 -0.1190 21 1 -0.4849 0.8401 -0.0004 22 1 0.6246 -2.5571 -0.8896 23 1 0.6239 -2.5568 0.8903 24 1 0.9452 -4.9831 -0.8879 25 1 0.9443 -4.9818 0.8921 26 1 3.2679 -5.8488 0.8930 27 1 3.2680 -5.8497 -0.8870 28 1 3.8913 -8.5459 0.8951 29 1 3.8927 -8.5467 -0.8848 30 1 2.0777 -10.3270 -0.8046 31 1 1.0974 -10.2203 1.3979 32 1 2.6996 -10.0672 2.1917 33 1 1.4743 -12.5306 0.8329 34 1 2.2453 -12.4226 2.4452 35 1 4.4020 -12.4612 1.5540 36 1 3.5948 -13.2637 0.1779 37 1 4.8926 -10.6694 0.2226 38 1 4.0860 -11.4717 -1.1541 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395304307.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:40 Heat of formation + Delta-G solvation = -113.390820 kcal Electronic energy + Delta-G solvation = -16906.373419 eV Core-core repulsion = 14067.557042 eV Total energy + Delta-G solvation = -2838.816377 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.123 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.50466 -36.81512 -35.63738 -32.85292 -31.63489 -30.91342 -28.98563 -27.04303 -25.55868 -22.66331 -22.17020 -20.82515 -20.07009 -17.56242 -16.48578 -16.40219 -15.73588 -15.52914 -15.37687 -14.77849 -14.56759 -14.20175 -13.86129 -13.62192 -13.37027 -13.23031 -12.62072 -12.02695 -11.91981 -11.70953 -11.44923 -11.35864 -11.13586 -11.08648 -10.91673 -10.87679 -10.72523 -10.68947 -10.68175 -10.18357 -9.88071 -9.14370 -8.86179 -8.22185 -8.20001 -6.11973 -4.14284 1.44308 2.63474 3.31480 3.34133 3.38000 3.76061 4.25101 4.30638 4.34771 4.42751 4.88819 4.92551 5.00602 5.15393 5.19614 5.19758 5.24130 5.33883 5.40031 5.43690 5.60313 5.63094 5.65219 5.68117 5.80544 5.81592 5.90299 6.04887 6.11328 6.12932 6.22695 7.07925 7.40457 7.77172 8.12700 8.53458 8.97967 9.50376 10.99495 Molecular weight = 260.12amu Principal moments of inertia in cm(-1) A = 0.063112 B = 0.002936 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.546550 B = 9534.682872 C = 9681.531958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.910 3.090 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.518 4.518 8 H 0.066 0.934 9 C 0.193 3.807 10 O -0.394 6.394 11 C 0.084 3.916 12 C -0.443 4.443 13 S 1.243 4.757 14 O -0.847 6.847 15 C -0.443 4.443 16 C -0.073 4.073 17 C -0.130 4.130 18 C -0.125 4.125 19 C -0.125 4.125 20 C -0.117 4.117 21 H 0.265 0.735 22 H 0.006 0.994 23 H 0.009 0.991 24 H 0.041 0.959 25 H 0.049 0.951 26 H 0.122 0.878 27 H 0.088 0.912 28 H 0.118 0.882 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.066 0.934 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.351 -23.778 5.972 25.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.737 3.263 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.556 4.556 8 H 0.084 0.916 9 C 0.118 3.882 10 O -0.314 6.314 11 C 0.005 3.995 12 C -0.580 4.580 13 S 1.441 4.559 14 O -0.842 6.842 15 C -0.579 4.579 16 C -0.092 4.092 17 C -0.168 4.168 18 C -0.163 4.163 19 C -0.163 4.163 20 C -0.156 4.156 21 H 0.075 0.925 22 H 0.024 0.976 23 H 0.027 0.973 24 H 0.059 0.941 25 H 0.067 0.933 26 H 0.140 0.860 27 H 0.107 0.893 28 H 0.136 0.864 29 H 0.104 0.896 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.098 0.902 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.426 -23.829 5.937 24.953 hybrid contribution 1.573 1.242 -1.924 2.778 sum 5.999 -22.587 4.012 23.712 Atomic orbital electron populations 1.69960 1.06103 1.27343 1.50263 1.24964 0.95011 0.99458 0.95073 0.86368 0.79295 0.81808 0.78835 1.20050 1.21090 1.19951 1.21011 0.94021 0.89335 1.51217 0.91602 1.20255 0.88826 0.83436 0.95646 1.87878 1.35578 1.12685 1.95230 1.21681 0.92838 0.85136 0.99854 1.27732 1.08505 1.13519 1.08213 1.70536 0.87183 0.85839 1.12330 1.93121 1.57193 1.82766 1.51115 1.27737 1.15968 1.06737 1.07498 1.21663 0.97517 0.91444 0.98588 1.22804 1.01164 0.96064 0.96749 1.22344 0.97152 0.96023 1.00768 1.22135 0.97386 0.97946 0.98836 1.22214 0.98150 0.95459 0.99811 0.92522 0.97606 0.97341 0.94102 0.93286 0.86004 0.89266 0.86350 0.89618 0.90359 0.90763 0.90227 0.91638 0.91455 0.91805 0.92070 0.91486 0.92092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.14 13.29 55.43 0.74 -26.41 16 2 C 0.06 1.65 5.46 -17.81 -0.10 1.55 16 3 Si 0.91 22.00 29.54 -169.99 -5.02 16.98 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.52 -15.52 9.43 -34.44 -0.32 -15.84 16 8 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 9 C 0.19 5.43 5.69 36.00 0.20 5.63 16 10 O -0.39 -9.82 10.33 -35.23 -0.36 -10.19 16 11 C 0.08 1.61 5.95 37.16 0.22 1.83 16 12 C -0.44 -6.36 6.29 37.16 0.23 -6.13 16 13 S 1.24 13.91 12.82 -107.50 -1.38 12.53 16 14 O -0.85 -15.01 18.14 -35.23 -0.64 -15.65 16 15 C -0.44 -3.91 5.25 37.16 0.20 -3.72 16 16 C -0.07 -0.62 2.85 -88.77 -0.25 -0.88 16 17 C -0.13 -0.85 6.01 -24.55 -0.15 -1.00 16 18 C -0.13 -0.79 6.82 -25.07 -0.17 -0.96 16 19 C -0.13 -0.82 6.80 -25.62 -0.17 -0.99 16 20 C -0.12 -0.91 6.37 -25.62 -0.16 -1.07 16 21 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 22 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 23 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 24 H 0.04 0.83 8.14 -51.92 -0.42 0.41 16 25 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.12 1.44 8.14 -51.93 -0.42 1.01 16 27 H 0.09 1.41 8.14 -51.92 -0.42 0.98 16 28 H 0.12 0.74 8.03 -51.92 -0.42 0.32 16 29 H 0.08 0.86 8.14 -51.92 -0.42 0.44 16 30 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.40 7.98 -51.93 -0.41 -0.01 16 33 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.49 7.84 -51.93 -0.41 0.08 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 326.32 15.07 4.92 4.92 Total: -1.00 -36.80 326.32 -8.93 -45.72 By element: Atomic # 1 Polarization: 0.37 SS G_CDS: -6.70 Total: -6.33 kcal Atomic # 6 Polarization: -21.10 SS G_CDS: -0.48 Total: -21.58 kcal Atomic # 7 Polarization: -27.14 SS G_CDS: 0.74 Total: -26.41 kcal Atomic # 8 Polarization: -24.83 SS G_CDS: -1.00 Total: -25.83 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Atomic # 16 Polarization: 13.91 SS G_CDS: -1.38 Total: 12.53 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -36.80 -8.93 -45.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395304307.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.667 kcal (2) G-P(sol) polarization free energy of solvation -36.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds