Wall clock time and date at job start Mon Mar 30 2020 04:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86799 * 120.00126 * 2 1 4 4 H 1.48501 * 109.46727 * 240.00007 * 3 2 1 5 5 H 1.48499 * 109.46993 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47117 * 119.99925 * 3 2 1 7 7 C 1.37883 * 119.99546 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99413 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00031 * 0.02562 * 7 2 1 10 10 O 1.42901 * 109.47039 * 180.02562 * 9 7 2 11 11 C 1.42901 * 114.00110 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47175 * 179.97438 * 11 10 9 13 13 S 1.81400 * 109.47130 * 180.02562 * 12 11 10 14 14 O 1.42097 * 109.47048 * 63.61742 * 13 12 11 15 15 C 1.81399 * 102.99964 * 180.02562 * 13 12 11 16 16 C 1.53002 * 109.47404 * 179.97438 * 15 13 12 17 17 C 1.55238 * 110.58012 * 289.87798 * 16 15 13 18 18 C 1.54894 * 102.58338 * 203.33342 * 17 16 15 19 19 C 1.54266 * 104.31305 * 37.93170 * 18 17 16 20 20 C 1.53869 * 106.60031 * 336.32486 * 19 18 17 21 21 H 0.97004 * 119.99318 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.47695 * 59.99766 * 9 7 2 23 23 H 1.09003 * 109.47653 * 299.99794 * 9 7 2 24 24 H 1.09009 * 109.46958 * 60.00339 * 11 10 9 25 25 H 1.08993 * 109.47496 * 300.00415 * 11 10 9 26 26 H 1.08997 * 109.47196 * 60.00191 * 12 11 10 27 27 H 1.09002 * 109.47158 * 300.00248 * 12 11 10 28 28 H 1.09008 * 109.47188 * 60.00033 * 15 13 12 29 29 H 1.09000 * 109.47721 * 300.00289 * 15 13 12 30 30 H 1.09006 * 110.43291 * 52.46048 * 16 15 13 31 31 H 1.08996 * 110.89448 * 85.04906 * 17 16 15 32 32 H 1.08993 * 110.76342 * 321.56571 * 17 16 15 33 33 H 1.09002 * 110.48891 * 279.18596 * 18 17 16 34 34 H 1.08998 * 110.48494 * 156.67683 * 18 17 16 35 35 H 1.09001 * 110.03084 * 95.60669 * 19 18 17 36 36 H 1.08996 * 110.03108 * 216.98559 * 19 18 17 37 37 H 1.08999 * 110.04012 * 119.28327 * 20 19 18 38 38 H 1.09006 * 110.02998 * 240.67078 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1942 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 8 2.1795 -3.5854 0.0017 11 6 1.5649 -4.8755 0.0024 12 6 2.6478 -5.9563 0.0030 13 16 1.8676 -7.5939 0.0032 14 8 1.1269 -7.7657 -1.1972 15 6 3.2878 -8.7225 0.0047 16 6 2.7897 -10.1692 0.0056 17 6 2.1441 -10.5232 1.3723 18 6 2.2701 -12.0664 1.4153 19 6 3.6447 -12.3548 0.7773 20 6 3.9751 -11.1485 -0.1190 21 1 -0.4849 0.8401 -0.0004 22 1 0.6246 -2.5571 -0.8896 23 1 0.6239 -2.5568 0.8903 24 1 0.9452 -4.9831 -0.8879 25 1 0.9443 -4.9818 0.8921 26 1 3.2679 -5.8488 0.8930 27 1 3.2680 -5.8497 -0.8870 28 1 3.8913 -8.5459 0.8951 29 1 3.8927 -8.5467 -0.8848 30 1 2.0777 -10.3270 -0.8046 31 1 1.0974 -10.2203 1.3979 32 1 2.6996 -10.0672 2.1917 33 1 1.4743 -12.5306 0.8329 34 1 2.2453 -12.4226 2.4452 35 1 4.4020 -12.4612 1.5540 36 1 3.5948 -13.2637 0.1779 37 1 4.8926 -10.6694 0.2226 38 1 4.0860 -11.4717 -1.1541 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395304307.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:39 Heat of formation + Delta-G solvation = -139.118963 kcal Electronic energy + Delta-G solvation = -16907.489075 eV Core-core repulsion = 14067.557042 eV Total energy + Delta-G solvation = -2839.932033 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.123 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.08334 -38.71248 -36.88725 -35.03869 -32.46525 -32.28357 -29.51328 -29.19147 -26.28936 -24.64720 -23.80475 -21.33661 -20.71184 -18.73470 -18.52613 -17.70535 -17.07672 -16.92808 -16.42939 -16.13944 -15.60425 -15.54315 -15.18907 -14.79380 -14.57824 -14.13628 -13.89702 -13.80457 -13.02058 -12.93774 -12.72764 -12.57415 -12.50363 -12.31795 -12.05077 -12.00963 -11.86938 -11.72248 -11.42409 -11.39330 -11.22592 -11.00259 -10.91363 -10.32417 -9.26032 -8.34900 -6.48687 0.44563 1.38909 1.44101 1.52753 1.67782 2.33109 2.72957 2.98525 3.27283 3.65333 3.70879 3.84991 3.89629 4.05422 4.27695 4.35812 4.36966 4.54879 4.66604 4.67641 4.74514 4.77198 4.84994 4.90673 4.98864 5.01241 5.07876 5.11215 5.16577 5.31444 5.39218 5.50429 5.50904 5.58059 5.90612 6.45751 6.74574 7.23113 8.77350 Molecular weight = 260.12amu Principal moments of inertia in cm(-1) A = 0.063112 B = 0.002936 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.546550 B = 9534.682872 C = 9681.531958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.005 3.995 3 Si 0.987 3.013 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.260 1.260 7 C -0.554 4.554 8 H 0.063 0.937 9 C 0.204 3.796 10 O -0.408 6.408 11 C 0.067 3.933 12 C -0.443 4.443 13 S 1.301 4.699 14 O -0.915 6.915 15 C -0.432 4.432 16 C -0.080 4.080 17 C -0.134 4.134 18 C -0.127 4.127 19 C -0.125 4.125 20 C -0.119 4.119 21 H 0.272 0.728 22 H -0.021 1.021 23 H -0.001 1.001 24 H 0.018 0.982 25 H 0.078 0.922 26 H 0.155 0.845 27 H 0.071 0.929 28 H 0.159 0.841 29 H 0.075 0.925 30 H 0.051 0.949 31 H 0.078 0.922 32 H 0.104 0.896 33 H 0.058 0.942 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.060 0.940 37 H 0.076 0.924 38 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.996 -24.065 7.806 26.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.193 4.193 3 Si 0.809 3.191 4 H -0.193 1.193 5 H -0.198 1.198 6 H -0.185 1.185 7 C -0.592 4.592 8 H 0.082 0.918 9 C 0.129 3.871 10 O -0.329 6.329 11 C -0.011 4.011 12 C -0.578 4.578 13 S 1.502 4.498 14 O -0.911 6.911 15 C -0.571 4.571 16 C -0.100 4.100 17 C -0.171 4.171 18 C -0.165 4.165 19 C -0.162 4.162 20 C -0.158 4.158 21 H 0.081 0.919 22 H -0.004 1.004 23 H 0.017 0.983 24 H 0.037 0.963 25 H 0.096 0.904 26 H 0.173 0.827 27 H 0.090 0.910 28 H 0.177 0.823 29 H 0.094 0.906 30 H 0.070 0.930 31 H 0.097 0.903 32 H 0.122 0.878 33 H 0.076 0.924 34 H 0.101 0.899 35 H 0.094 0.906 36 H 0.078 0.922 37 H 0.095 0.905 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 6.053 -24.115 7.767 26.048 hybrid contribution 1.077 1.152 -2.494 2.951 sum 7.130 -22.963 5.273 24.616 Atomic orbital electron populations 1.70072 1.07831 1.28897 1.50085 1.26029 0.96034 1.03553 0.93713 0.85179 0.78063 0.76383 0.79446 1.19329 1.19836 1.18478 1.21364 0.94182 0.90744 1.52874 0.91845 1.19921 0.88766 0.84639 0.93817 1.87826 1.35598 1.14180 1.95257 1.22073 0.94897 0.83885 1.00225 1.27837 1.07356 1.13623 1.09023 1.69785 0.86872 0.83668 1.09507 1.93002 1.61027 1.83508 1.53546 1.27675 1.14518 1.05820 1.09071 1.21716 0.97698 0.91312 0.99251 1.22924 1.01706 0.96497 0.95955 1.22373 0.96737 0.95826 1.01530 1.22148 0.97908 0.97276 0.98916 1.22232 0.98021 0.95811 0.99692 0.91880 1.00357 0.98302 0.96332 0.90377 0.82666 0.90986 0.82335 0.90559 0.93021 0.90307 0.87799 0.92357 0.89949 0.90582 0.92160 0.90533 0.93116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.68 13.29 21.45 0.28 -56.39 16 2 C 0.01 0.32 5.46 84.65 0.46 0.78 16 3 Si 0.99 44.64 29.54 68.60 2.03 46.67 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 5 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 6 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 7 C -0.55 -33.74 9.43 25.60 0.24 -33.50 16 8 H 0.06 3.79 7.81 -2.91 -0.02 3.76 16 9 C 0.20 11.86 5.69 71.23 0.41 12.27 16 10 O -0.41 -20.80 10.33 -148.98 -1.54 -22.34 16 11 C 0.07 2.61 5.95 71.98 0.43 3.03 16 12 C -0.44 -12.33 6.29 71.98 0.45 -11.88 16 13 S 1.30 27.90 12.82 -56.49 -0.72 27.18 16 14 O -0.92 -33.29 18.14 -148.98 -2.70 -35.99 16 15 C -0.43 -6.64 5.25 71.98 0.38 -6.27 16 16 C -0.08 -1.25 2.85 -9.60 -0.03 -1.28 16 17 C -0.13 -1.40 6.01 32.01 0.19 -1.21 16 18 C -0.13 -1.31 6.82 31.67 0.22 -1.10 16 19 C -0.12 -1.36 6.80 31.32 0.21 -1.15 16 20 C -0.12 -1.63 6.37 31.32 0.20 -1.43 16 21 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 22 H -0.02 -1.32 8.14 -2.39 -0.02 -1.34 16 23 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 24 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 25 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 26 H 0.16 3.22 8.14 -2.39 -0.02 3.20 16 27 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 28 H 0.16 1.25 8.03 -2.39 -0.02 1.23 16 29 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 31 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.10 0.61 7.98 -2.39 -0.02 0.59 16 33 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.06 0.66 8.14 -2.39 -0.02 0.65 16 37 H 0.08 0.91 7.84 -2.39 -0.02 0.89 16 38 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 Total: -1.00 -81.82 326.32 1.51 -80.31 By element: Atomic # 1 Polarization: 1.29 SS G_CDS: 1.00 Total: 2.29 kcal Atomic # 6 Polarization: -44.88 SS G_CDS: 3.16 Total: -41.72 kcal Atomic # 7 Polarization: -56.68 SS G_CDS: 0.28 Total: -56.39 kcal Atomic # 8 Polarization: -54.09 SS G_CDS: -4.24 Total: -58.33 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Atomic # 16 Polarization: 27.90 SS G_CDS: -0.72 Total: 27.18 kcal Total: -81.82 1.51 -80.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395304307.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.809 kcal (2) G-P(sol) polarization free energy of solvation -81.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds