Wall clock time and date at job start Mon Mar 30 2020 05:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.86805 * 2 1 4 4 O 1.43746 * 110.00491 * 238.91823 * 2 1 3 5 5 C 1.44380 * 106.97363 * 213.98987 * 4 2 1 6 6 C 1.54994 * 103.49319 * 40.05890 * 5 4 2 7 7 C 1.54100 * 109.88104 * 121.01084 * 2 1 3 8 8 H 1.09005 * 110.48873 * 240.41334 * 7 2 1 9 9 S 1.81401 * 110.48905 * 2.92524 * 7 2 1 10 10 O 1.42100 * 109.46993 * 291.39059 * 9 7 2 11 11 C 1.81400 * 103.00097 * 174.99972 * 9 7 2 12 12 C 1.52996 * 109.47150 * 179.97438 * 11 9 7 13 13 C 1.52997 * 109.47131 * 180.02562 * 12 11 9 14 14 C 1.53006 * 109.47127 * 180.02562 * 13 12 11 15 15 C 1.50698 * 109.47184 * 179.97438 * 14 13 12 16 16 H 1.08005 * 119.99819 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00046 * 179.97438 * 15 14 13 18 18 N 1.31518 * 119.99944 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99979 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46926 * 60.00512 * 19 17 15 21 21 H 1.48506 * 109.46961 * 179.97438 * 19 17 15 22 22 H 1.48492 * 109.47227 * 300.00303 * 19 17 15 23 23 H 1.09003 * 109.46984 * 298.98580 * 1 2 3 24 24 H 1.08999 * 109.47270 * 58.98929 * 1 2 3 25 25 H 1.09002 * 109.46774 * 178.99134 * 1 2 3 26 26 H 1.09001 * 110.61738 * 158.55902 * 5 4 2 27 27 H 1.08999 * 110.62029 * 281.39648 * 5 4 2 28 28 H 1.08999 * 110.91192 * 204.77396 * 6 5 4 29 29 H 1.09005 * 110.90628 * 81.16896 * 6 5 4 30 30 H 1.09001 * 109.46713 * 60.00360 * 11 9 7 31 31 H 1.08992 * 109.47404 * 300.00668 * 11 9 7 32 32 H 1.09001 * 109.46993 * 60.00003 * 12 11 9 33 33 H 1.09004 * 109.47298 * 300.00418 * 12 11 9 34 34 H 1.09001 * 109.46832 * 60.00325 * 13 12 11 35 35 H 1.08993 * 109.47194 * 299.99846 * 13 12 11 36 36 H 1.09001 * 109.46801 * 300.00272 * 14 13 12 37 37 H 1.09001 * 109.46998 * 59.99868 * 14 13 12 38 38 H 0.96997 * 119.99752 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 8 2.0217 -0.6973 -1.1568 5 6 3.2418 -1.3607 -0.7620 6 6 2.9228 -1.8882 0.6601 7 6 2.0540 -0.7466 1.2420 8 1 2.6579 -0.0821 1.8601 9 16 0.6740 -1.4259 2.2037 10 8 -0.0624 -0.3623 2.7916 11 6 1.5107 -2.3735 3.5047 12 6 0.4662 -3.0198 4.4169 13 6 1.1718 -3.8185 5.5145 14 6 0.1272 -4.4654 6.4263 15 6 0.8223 -5.2526 7.5071 16 1 1.9012 -5.2877 7.5406 17 6 0.0809 -5.9272 8.4538 18 7 -1.2330 -5.8840 8.4133 19 14 0.9425 -6.9024 9.7939 20 1 1.8022 -5.9927 10.5931 21 1 -0.0715 -7.5293 10.6796 22 1 1.7814 -7.9598 9.1750 23 1 -0.3633 0.4980 0.8990 24 1 -0.3634 0.5294 -0.8808 25 1 -0.3633 -1.0275 -0.0181 26 1 3.4650 -2.1872 -1.4368 27 1 4.0714 -0.6543 -0.7349 28 1 3.8359 -2.0170 1.2412 29 1 2.3592 -2.8200 0.6120 30 1 2.1418 -1.7060 4.0916 31 1 2.1266 -3.1494 3.0501 32 1 -0.1653 -3.6871 3.8303 33 1 -0.1494 -2.2435 4.8715 34 1 1.8030 -3.1508 6.1010 35 1 1.7875 -4.5947 5.0603 36 1 -0.4889 -3.6893 6.8806 37 1 -0.5036 -5.1331 5.8396 38 1 -1.7546 -6.3589 9.0791 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395401278.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:41 Heat of formation + Delta-G solvation = -106.925509 kcal Electronic energy + Delta-G solvation = -17397.105845 eV Core-core repulsion = 14558.569825 eV Total energy + Delta-G solvation = -2838.536020 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.123 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.67279 -35.80793 -35.19911 -32.71497 -32.69108 -31.76630 -29.47015 -26.41261 -25.19558 -22.57698 -22.12683 -21.39585 -20.09864 -17.41647 -17.11080 -16.28123 -16.14585 -15.69965 -15.29555 -15.04934 -14.53923 -14.42449 -13.80572 -13.24318 -12.79096 -12.74309 -12.69875 -12.53333 -11.98006 -11.75855 -11.62519 -11.54465 -11.38679 -11.30014 -11.01673 -10.69128 -10.62556 -10.50675 -10.16756 -9.88682 -9.68161 -9.25447 -9.02401 -8.33578 -8.21067 -5.98584 -4.01240 1.40924 2.55554 3.33329 3.37774 3.40075 3.50175 3.66214 4.18086 4.43882 4.46473 4.69274 4.73364 4.91426 4.99669 5.11792 5.20874 5.24781 5.32391 5.36807 5.43260 5.53833 5.61760 5.67442 5.77514 5.94705 5.96850 6.16603 6.40585 6.56620 6.71863 6.87709 7.12875 7.68738 7.84118 8.01653 8.44139 9.05789 9.62594 11.12724 Molecular weight = 260.12amu Principal moments of inertia in cm(-1) A = 0.046459 B = 0.003403 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.537976 B = 8225.247295 C = 8629.761016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.112 3.888 3 H 0.069 0.931 4 O -0.370 6.370 5 C 0.050 3.950 6 C -0.124 4.124 7 C -0.457 4.457 8 H 0.098 0.902 9 S 1.256 4.744 10 O -0.846 6.846 11 C -0.445 4.445 12 C -0.101 4.101 13 C -0.104 4.104 14 C 0.018 3.982 15 C -0.522 4.522 16 H 0.053 0.947 17 C 0.056 3.944 18 N -0.895 5.895 19 Si 0.892 3.108 20 H -0.278 1.278 21 H -0.287 1.287 22 H -0.277 1.277 23 H 0.095 0.905 24 H 0.078 0.922 25 H 0.075 0.925 26 H 0.098 0.902 27 H 0.058 0.942 28 H 0.085 0.915 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.114 0.886 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.045 0.955 35 H 0.050 0.950 36 H 0.015 0.985 37 H 0.018 0.982 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.194 7.933 -20.384 23.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.053 3.947 3 H 0.086 0.914 4 O -0.289 6.289 5 C -0.028 4.028 6 C -0.162 4.162 7 C -0.573 4.573 8 H 0.117 0.883 9 S 1.456 4.544 10 O -0.841 6.841 11 C -0.583 4.583 12 C -0.139 4.139 13 C -0.143 4.143 14 C -0.019 4.019 15 C -0.560 4.560 16 H 0.072 0.928 17 C -0.145 4.145 18 N -0.535 5.535 19 Si 0.720 3.280 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.202 1.202 23 H 0.114 0.886 24 H 0.097 0.903 25 H 0.093 0.907 26 H 0.116 0.884 27 H 0.077 0.923 28 H 0.104 0.896 29 H 0.111 0.889 30 H 0.101 0.899 31 H 0.133 0.867 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.033 0.967 37 H 0.036 0.964 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.965 8.039 -20.644 22.943 hybrid contribution 2.079 0.832 2.412 3.292 sum 8.045 8.871 -18.232 21.813 Atomic orbital electron populations 1.22463 0.93812 1.03933 1.05199 1.22195 0.94752 0.95086 0.82629 0.91351 1.88877 1.39507 1.67815 1.32736 1.23529 0.87649 0.96466 0.95116 1.22850 0.99771 0.97203 0.96419 1.29089 1.15006 1.05569 1.07587 0.88307 1.70863 0.86232 0.99827 0.97473 1.93110 1.56732 1.55970 1.78287 1.27725 1.08929 1.09397 1.12226 1.21305 0.96282 0.99461 0.96900 1.21625 0.99359 0.97742 0.95582 1.19132 0.93727 0.95390 0.93654 1.21230 0.92928 1.30283 1.11598 0.92828 1.25033 0.94840 0.96717 0.97902 1.69956 1.04665 1.43115 1.35736 0.86660 0.79232 0.80290 0.81820 1.20324 1.21258 1.20221 0.88635 0.90314 0.90664 0.88394 0.92331 0.89602 0.88904 0.89948 0.86716 0.91245 0.91985 0.93664 0.93132 0.96655 0.96395 0.92935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.87 8.30 37.16 0.31 -1.56 16 2 C 0.11 1.09 4.05 -26.16 -0.11 0.99 16 3 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 4 O -0.37 -3.66 11.19 -35.23 -0.39 -4.05 16 5 C 0.05 0.36 7.72 38.21 0.29 0.65 16 6 C -0.12 -0.85 6.18 -24.73 -0.15 -1.01 16 7 C -0.46 -4.25 3.59 -25.20 -0.09 -4.35 16 8 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 9 S 1.26 13.91 10.17 -107.50 -1.09 12.81 16 10 O -0.85 -14.25 16.19 -35.23 -0.57 -14.82 16 11 C -0.44 -5.64 5.66 37.16 0.21 -5.43 16 12 C -0.10 -1.69 5.22 -26.73 -0.14 -1.83 16 13 C -0.10 -2.15 5.15 -26.73 -0.14 -2.28 16 14 C 0.02 0.48 4.97 -27.88 -0.14 0.34 16 15 C -0.52 -15.00 9.11 -34.44 -0.31 -15.32 16 16 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 18 N -0.90 -27.24 13.29 55.43 0.74 -26.51 16 19 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H 0.10 1.09 5.96 -51.93 -0.31 0.78 16 24 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.07 0.60 7.16 -51.93 -0.37 0.23 16 26 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.09 0.48 7.83 -51.93 -0.41 0.07 16 30 H 0.08 1.12 8.14 -51.92 -0.42 0.70 16 31 H 0.11 1.13 7.88 -51.93 -0.41 0.72 16 32 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 33 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 317.82 15.07 4.79 4.79 Total: -1.00 -35.41 317.82 -8.45 -43.86 By element: Atomic # 1 Polarization: 1.92 SS G_CDS: -6.53 Total: -4.61 kcal Atomic # 6 Polarization: -27.90 SS G_CDS: -0.36 Total: -28.26 kcal Atomic # 7 Polarization: -27.24 SS G_CDS: 0.74 Total: -26.51 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: -0.96 Total: -18.87 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 16 Polarization: 13.91 SS G_CDS: -1.09 Total: 12.81 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -35.41 -8.45 -43.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395401278.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.069 kcal (2) G-P(sol) polarization free energy of solvation -35.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds