Wall clock time and date at job start Mon Mar 30 2020 05:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.86805 * 2 1 4 4 O 1.43746 * 110.00491 * 238.91823 * 2 1 3 5 5 C 1.44380 * 106.97363 * 213.98987 * 4 2 1 6 6 C 1.54994 * 103.49319 * 40.05890 * 5 4 2 7 7 C 1.54100 * 109.88104 * 121.01084 * 2 1 3 8 8 H 1.09005 * 110.48873 * 240.41334 * 7 2 1 9 9 S 1.81401 * 110.48905 * 2.92524 * 7 2 1 10 10 O 1.42100 * 109.46993 * 291.39059 * 9 7 2 11 11 C 1.81400 * 103.00097 * 174.99972 * 9 7 2 12 12 C 1.52996 * 109.47150 * 179.97438 * 11 9 7 13 13 C 1.52997 * 109.47131 * 180.02562 * 12 11 9 14 14 C 1.53006 * 109.47127 * 180.02562 * 13 12 11 15 15 C 1.50698 * 109.47184 * 179.97438 * 14 13 12 16 16 H 1.08005 * 119.99819 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00046 * 179.97438 * 15 14 13 18 18 N 1.31518 * 119.99944 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99979 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46926 * 60.00512 * 19 17 15 21 21 H 1.48506 * 109.46961 * 179.97438 * 19 17 15 22 22 H 1.48492 * 109.47227 * 300.00303 * 19 17 15 23 23 H 1.09003 * 109.46984 * 298.98580 * 1 2 3 24 24 H 1.08999 * 109.47270 * 58.98929 * 1 2 3 25 25 H 1.09002 * 109.46774 * 178.99134 * 1 2 3 26 26 H 1.09001 * 110.61738 * 158.55902 * 5 4 2 27 27 H 1.08999 * 110.62029 * 281.39648 * 5 4 2 28 28 H 1.08999 * 110.91192 * 204.77396 * 6 5 4 29 29 H 1.09005 * 110.90628 * 81.16896 * 6 5 4 30 30 H 1.09001 * 109.46713 * 60.00360 * 11 9 7 31 31 H 1.08992 * 109.47404 * 300.00668 * 11 9 7 32 32 H 1.09001 * 109.46993 * 60.00003 * 12 11 9 33 33 H 1.09004 * 109.47298 * 300.00418 * 12 11 9 34 34 H 1.09001 * 109.46832 * 60.00325 * 13 12 11 35 35 H 1.08993 * 109.47194 * 299.99846 * 13 12 11 36 36 H 1.09001 * 109.46801 * 300.00272 * 14 13 12 37 37 H 1.09001 * 109.46998 * 59.99868 * 14 13 12 38 38 H 0.96997 * 119.99752 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 8 2.0217 -0.6973 -1.1568 5 6 3.2418 -1.3607 -0.7620 6 6 2.9228 -1.8882 0.6601 7 6 2.0540 -0.7466 1.2420 8 1 2.6579 -0.0821 1.8601 9 16 0.6740 -1.4259 2.2037 10 8 -0.0624 -0.3623 2.7916 11 6 1.5107 -2.3735 3.5047 12 6 0.4662 -3.0198 4.4169 13 6 1.1718 -3.8185 5.5145 14 6 0.1272 -4.4654 6.4263 15 6 0.8223 -5.2526 7.5071 16 1 1.9012 -5.2877 7.5406 17 6 0.0809 -5.9272 8.4538 18 7 -1.2330 -5.8840 8.4133 19 14 0.9425 -6.9024 9.7939 20 1 1.8022 -5.9927 10.5931 21 1 -0.0715 -7.5293 10.6796 22 1 1.7814 -7.9598 9.1750 23 1 -0.3633 0.4980 0.8990 24 1 -0.3634 0.5294 -0.8808 25 1 -0.3633 -1.0275 -0.0181 26 1 3.4650 -2.1872 -1.4368 27 1 4.0714 -0.6543 -0.7349 28 1 3.8359 -2.0170 1.2412 29 1 2.3592 -2.8200 0.6120 30 1 2.1418 -1.7060 4.0916 31 1 2.1266 -3.1494 3.0501 32 1 -0.1653 -3.6871 3.8303 33 1 -0.1494 -2.2435 4.8715 34 1 1.8030 -3.1508 6.1010 35 1 1.7875 -4.5947 5.0603 36 1 -0.4889 -3.6893 6.8806 37 1 -0.5036 -5.1331 5.8396 38 1 -1.7546 -6.3589 9.0791 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395401278.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:41 Heat of formation + Delta-G solvation = -131.398663 kcal Electronic energy + Delta-G solvation = -17398.167080 eV Core-core repulsion = 14558.569825 eV Total energy + Delta-G solvation = -2839.597255 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.123 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.34777 -36.96772 -36.83282 -34.66761 -33.43237 -32.50251 -31.18452 -27.36794 -26.78550 -23.84578 -23.02563 -22.37257 -21.69535 -18.46373 -18.33694 -17.82085 -16.90451 -16.56861 -16.53518 -16.43049 -15.97400 -15.36992 -14.96606 -14.52885 -14.11847 -13.96854 -13.78100 -13.46532 -13.38485 -13.22243 -12.89780 -12.69309 -12.41822 -12.29495 -12.24593 -12.15011 -12.01158 -11.91708 -11.45077 -11.42180 -11.29003 -10.81533 -10.55306 -10.54569 -9.21193 -8.19972 -6.31942 0.48836 1.39450 1.42892 1.50911 1.65683 2.40815 2.71634 2.89879 3.12607 3.46238 3.72922 3.92454 3.97225 4.03796 4.20884 4.25866 4.37269 4.41621 4.55128 4.59400 4.66772 4.84993 4.87685 4.92804 4.96147 5.00681 5.10306 5.15425 5.19315 5.25514 5.30539 5.52762 5.75829 5.86077 5.91656 6.24757 6.85536 7.37458 8.91712 Molecular weight = 260.12amu Principal moments of inertia in cm(-1) A = 0.046459 B = 0.003403 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.537976 B = 8225.247295 C = 8629.761016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.109 3.891 3 H 0.064 0.936 4 O -0.383 6.383 5 C 0.043 3.957 6 C -0.125 4.125 7 C -0.449 4.449 8 H 0.093 0.907 9 S 1.299 4.701 10 O -0.909 6.909 11 C -0.444 4.444 12 C -0.101 4.101 13 C -0.094 4.094 14 C 0.017 3.983 15 C -0.546 4.546 16 H 0.061 0.939 17 C -0.003 4.003 18 N -0.935 5.935 19 Si 0.967 3.033 20 H -0.270 1.270 21 H -0.283 1.283 22 H -0.262 1.262 23 H 0.073 0.927 24 H 0.088 0.912 25 H 0.090 0.910 26 H 0.121 0.879 27 H 0.062 0.938 28 H 0.102 0.898 29 H 0.116 0.884 30 H 0.072 0.928 31 H 0.154 0.846 32 H 0.088 0.912 33 H 0.033 0.967 34 H 0.038 0.962 35 H 0.069 0.931 36 H -0.020 1.020 37 H 0.001 0.999 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.375 6.666 -21.558 24.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C 0.050 3.950 3 H 0.082 0.918 4 O -0.303 6.303 5 C -0.034 4.034 6 C -0.163 4.163 7 C -0.567 4.567 8 H 0.112 0.888 9 S 1.501 4.499 10 O -0.904 6.904 11 C -0.581 4.581 12 C -0.139 4.139 13 C -0.133 4.133 14 C -0.020 4.020 15 C -0.584 4.584 16 H 0.079 0.921 17 C -0.201 4.201 18 N -0.575 5.575 19 Si 0.791 3.209 20 H -0.195 1.195 21 H -0.208 1.208 22 H -0.186 1.186 23 H 0.092 0.908 24 H 0.107 0.893 25 H 0.109 0.891 26 H 0.139 0.861 27 H 0.080 0.920 28 H 0.121 0.879 29 H 0.134 0.866 30 H 0.091 0.909 31 H 0.172 0.828 32 H 0.107 0.893 33 H 0.051 0.949 34 H 0.057 0.943 35 H 0.088 0.912 36 H -0.001 1.001 37 H 0.019 0.981 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 8.146 6.767 -21.808 24.244 hybrid contribution 1.429 1.266 2.689 3.297 sum 9.574 8.033 -19.120 22.842 Atomic orbital electron populations 1.22474 0.94052 1.04819 1.04567 1.22179 0.94719 0.95114 0.82942 0.91785 1.88867 1.40702 1.68046 1.32692 1.23773 0.86717 0.97148 0.95744 1.23028 1.00225 0.96904 0.96134 1.28952 1.14135 1.06721 1.06873 0.88819 1.70132 0.85808 0.98387 0.95566 1.93019 1.60092 1.58188 1.79136 1.27700 1.07999 1.10381 1.11996 1.21193 0.97148 0.98810 0.96780 1.21458 0.97931 0.98205 0.95702 1.19092 0.94573 0.94216 0.94137 1.21712 0.93542 1.30661 1.12519 0.92070 1.26035 0.95562 0.97863 1.00611 1.70101 1.06411 1.44106 1.36856 0.85478 0.78155 0.78861 0.78417 1.19512 1.20840 1.18631 0.90835 0.89333 0.89127 0.86109 0.91973 0.87945 0.86573 0.90883 0.82826 0.89333 0.94859 0.94340 0.91186 1.00129 0.98078 0.92747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.71 8.30 71.98 0.60 -3.11 16 2 C 0.11 1.99 4.05 30.97 0.13 2.11 16 3 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 4 O -0.38 -6.69 11.19 -148.98 -1.67 -8.35 16 5 C 0.04 0.47 7.72 72.66 0.56 1.03 16 6 C -0.12 -1.24 6.18 31.89 0.20 -1.05 16 7 C -0.45 -7.46 3.59 31.58 0.11 -7.35 16 8 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 9 S 1.30 27.31 10.17 -56.49 -0.57 26.73 16 10 O -0.91 -31.31 16.19 -148.98 -2.41 -33.72 16 11 C -0.44 -10.38 5.66 71.98 0.41 -9.97 16 12 C -0.10 -3.34 5.22 30.59 0.16 -3.19 16 13 C -0.09 -3.85 5.15 30.60 0.16 -3.69 16 14 C 0.02 0.92 4.97 29.85 0.15 1.07 16 15 C -0.55 -31.61 9.11 25.60 0.23 -31.38 16 16 H 0.06 3.36 7.74 -2.91 -0.02 3.33 16 17 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 18 N -0.93 -57.88 13.29 21.45 0.28 -57.59 16 19 Si 0.97 44.51 29.54 68.60 2.03 46.54 16 20 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 21 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 22 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 23 H 0.07 1.73 5.96 -2.39 -0.01 1.71 16 24 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.09 1.33 7.16 -2.39 -0.02 1.31 16 26 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.12 0.65 7.83 -2.38 -0.02 0.63 16 30 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.15 2.37 7.88 -2.39 -0.02 2.35 16 32 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 33 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 34 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.07 2.57 8.14 -2.39 -0.02 2.56 16 36 H -0.02 -1.18 8.14 -2.39 -0.02 -1.20 16 37 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 38 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -78.56 317.82 1.83 -76.73 By element: Atomic # 1 Polarization: 3.89 SS G_CDS: 1.01 Total: 4.89 kcal Atomic # 6 Polarization: -58.39 SS G_CDS: 3.16 Total: -55.23 kcal Atomic # 7 Polarization: -57.88 SS G_CDS: 0.28 Total: -57.59 kcal Atomic # 8 Polarization: -38.00 SS G_CDS: -4.08 Total: -42.08 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Atomic # 16 Polarization: 27.31 SS G_CDS: -0.57 Total: 26.73 kcal Total: -78.56 1.83 -76.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395401278.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.665 kcal (2) G-P(sol) polarization free energy of solvation -78.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds