Wall clock time and date at job start Mon Mar 30 2020 04:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00064 * 2 1 4 4 H 1.48500 * 109.47326 * 239.99618 * 3 2 1 5 5 H 1.48500 * 109.47030 * 0.02562 * 3 2 1 6 6 H 1.48510 * 109.47015 * 119.99966 * 3 2 1 7 7 C 1.37880 * 120.00280 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00443 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99779 * 0.02562 * 7 2 1 10 10 H 1.09003 * 110.64541 * 56.85138 * 9 7 2 11 11 C 1.55163 * 110.71683 * 293.51461 * 9 7 2 12 12 C 1.55133 * 101.48313 * 205.96957 * 11 9 7 13 13 N 1.47416 * 104.72240 * 37.30080 * 12 11 9 14 14 S 1.65608 * 125.64729 * 155.81734 * 13 12 11 15 15 O 1.42099 * 106.40241 * 23.22555 * 14 13 12 16 16 O 1.42097 * 106.39895 * 156.14630 * 14 13 12 17 17 N 1.65596 * 107.21450 * 269.68766 * 14 13 12 18 18 C 1.46496 * 120.00278 * 65.00189 * 17 14 13 19 19 C 1.53008 * 117.49910 * 213.62188 * 18 17 14 20 20 C 1.52998 * 117.50012 * 144.99887 * 18 17 14 21 21 C 1.47015 * 108.70536 * 335.54720 * 13 12 11 22 22 H 0.96995 * 119.99745 * 359.97438 * 1 2 3 23 23 H 1.08998 * 111.00422 * 324.21051 * 11 9 7 24 24 H 1.08996 * 110.99919 * 88.06475 * 11 9 7 25 25 H 1.09002 * 110.49718 * 278.44985 * 12 11 9 26 26 H 1.09001 * 110.33489 * 156.06324 * 12 11 9 27 27 H 0.97005 * 120.00011 * 245.00188 * 17 14 13 28 28 H 1.09002 * 115.55075 * 359.32915 * 18 17 14 29 29 H 1.08993 * 117.49924 * 359.97438 * 19 18 17 30 30 H 1.09000 * 117.50011 * 145.01998 * 19 18 17 31 31 H 1.09009 * 117.49800 * 214.98014 * 20 18 17 32 32 H 1.08998 * 117.50309 * 359.97438 * 20 18 17 33 33 H 1.09005 * 109.88587 * 120.70815 * 21 13 12 34 34 H 1.09001 * 109.88830 * 241.87074 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.5762 -2.5533 -0.8537 11 6 0.4747 -2.6847 1.3311 12 6 0.3767 -4.2304 1.4185 13 7 1.6650 -4.7178 0.8932 14 16 2.3594 -6.1797 1.2440 15 8 1.3028 -7.0387 1.6500 16 8 3.2326 -6.4787 0.1635 17 7 3.3203 -5.9592 2.5745 18 6 2.7186 -5.6017 3.8615 19 6 3.5223 -4.6860 4.7871 20 6 3.3658 -6.1698 5.1261 21 6 2.2281 -3.6938 0.0012 22 1 -0.4849 0.8400 0.0004 23 1 1.0367 -2.2772 2.1714 24 1 -0.5164 -2.2349 1.2710 25 1 -0.4463 -4.5961 0.8044 26 1 0.2465 -4.5437 2.4544 27 1 4.2816 -6.0668 2.5018 28 1 1.6345 -5.4884 3.8583 29 1 4.4989 -4.3500 4.4386 30 1 2.9670 -3.9700 5.3929 31 1 2.7075 -6.4299 5.9550 32 1 4.2390 -6.8099 5.0006 33 1 3.2028 -3.3753 0.3710 34 1 2.3250 -4.0939 -1.0081 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397671311.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:46 Heat of formation + Delta-G solvation = -54.351883 kcal Electronic energy + Delta-G solvation = -18263.550972 eV Core-core repulsion = 15323.754372 eV Total energy + Delta-G solvation = -2939.796600 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 260.098 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -37.81024 -37.53956 -36.90153 -35.59138 -32.91431 -32.04739 -29.75016 -28.38864 -24.66741 -22.43702 -22.11952 -21.53112 -19.84291 -19.32167 -17.74678 -17.20479 -16.43999 -16.27638 -15.08932 -14.83070 -14.58099 -14.35102 -13.18471 -12.90313 -12.86385 -12.47732 -12.16720 -12.04597 -11.91126 -11.85169 -11.79547 -11.61288 -11.50686 -11.10850 -10.86233 -10.69915 -10.51205 -10.37416 -9.79397 -9.44827 -9.07233 -8.98349 -8.54855 -8.34739 -6.10977 -4.14309 0.84164 3.10915 3.27184 3.32504 3.34951 3.72235 3.88827 4.36612 4.51927 4.75033 4.84321 4.88582 5.04716 5.22988 5.47433 5.55368 5.81934 5.89569 6.01226 6.05328 6.11836 6.22227 6.29185 6.57173 6.77582 6.89440 6.97787 7.05073 7.21714 7.48123 7.72461 7.88908 8.28916 8.87117 9.50218 10.98949 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.024832 B = 0.006374 C = 0.005780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.326242 B = 4391.666901 C = 4843.464606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.065 3.935 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.516 4.516 8 H 0.058 0.942 9 C 0.047 3.953 10 H 0.043 0.957 11 C -0.106 4.106 12 C 0.117 3.883 13 N -1.013 6.013 14 S 2.803 3.197 15 O -0.982 6.982 16 O -0.981 6.981 17 N -1.101 6.101 18 C 0.092 3.908 19 C -0.187 4.187 20 C -0.191 4.191 21 C 0.126 3.874 22 H 0.262 0.738 23 H 0.059 0.941 24 H 0.078 0.922 25 H 0.059 0.941 26 H 0.054 0.946 27 H 0.413 0.587 28 H 0.134 0.866 29 H 0.098 0.902 30 H 0.103 0.897 31 H 0.101 0.899 32 H 0.096 0.904 33 H 0.056 0.944 34 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.251 -8.623 8.490 12.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.137 4.137 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.554 4.554 8 H 0.076 0.924 9 C 0.027 3.973 10 H 0.061 0.939 11 C -0.146 4.146 12 C -0.008 4.008 13 N -0.856 5.856 14 S 2.811 3.189 15 O -0.966 6.966 16 O -0.966 6.966 17 N -0.856 5.856 18 C -0.017 4.017 19 C -0.226 4.226 20 C -0.231 4.231 21 C 0.001 3.999 22 H 0.072 0.928 23 H 0.078 0.922 24 H 0.097 0.903 25 H 0.078 0.922 26 H 0.072 0.928 27 H 0.246 0.754 28 H 0.151 0.849 29 H 0.117 0.883 30 H 0.121 0.879 31 H 0.119 0.881 32 H 0.114 0.886 33 H 0.074 0.926 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.796 -9.415 8.009 12.930 hybrid contribution 1.019 1.284 0.268 1.661 sum 4.815 -8.130 8.278 12.562 Atomic orbital electron populations 1.69932 1.05901 1.26854 1.49894 1.24953 0.94857 0.99077 0.94826 0.86648 0.79583 0.83031 0.78651 1.20217 1.21310 1.20302 1.21010 0.92803 0.89981 1.51638 0.92393 1.19707 0.92685 0.90792 0.94142 0.93935 1.22794 1.02043 0.89350 1.00366 1.22218 0.83889 0.98136 0.96541 1.58790 1.31631 1.35793 1.59361 1.01233 0.72749 0.72535 0.72342 1.93586 1.56252 1.63458 1.83288 1.93597 1.67014 1.83855 1.52097 1.55723 1.20578 1.86474 1.22810 1.21240 0.96535 1.03388 0.80545 1.23378 1.02665 0.93266 1.03294 1.23372 1.03727 0.96794 0.99216 1.22071 0.98243 0.88518 0.91020 0.92825 0.92248 0.90324 0.92220 0.92795 0.75393 0.84867 0.88332 0.87854 0.88081 0.88586 0.92559 0.93021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.12 12.50 55.43 0.69 -23.43 16 2 C 0.07 1.71 5.36 -17.82 -0.10 1.62 16 3 Si 0.89 20.35 29.54 -169.99 -5.02 15.33 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.52 -13.27 8.47 -34.44 -0.29 -13.56 16 8 H 0.06 1.47 7.53 -52.48 -0.40 1.07 16 9 C 0.05 1.09 2.78 -89.93 -0.25 0.84 16 10 H 0.04 1.08 8.14 -51.93 -0.42 0.65 16 11 C -0.11 -2.22 5.96 -24.46 -0.15 -2.37 16 12 C 0.12 2.09 6.99 -2.41 -0.02 2.07 16 13 N -1.01 -18.31 3.75 -111.29 -0.42 -18.73 16 14 S 2.80 46.79 6.37 -107.50 -0.68 46.10 16 15 O -0.98 -18.28 17.48 -57.17 -1.00 -19.28 16 16 O -0.98 -18.83 17.72 -57.17 -1.01 -19.85 16 17 N -1.10 -14.42 6.10 -4.89 -0.03 -14.45 16 18 C 0.09 1.10 6.49 -67.93 -0.44 0.65 16 19 C -0.19 -1.93 10.46 -26.73 -0.28 -2.21 16 20 C -0.19 -1.84 10.46 -26.73 -0.28 -2.11 16 21 C 0.13 2.55 6.57 -3.07 -0.02 2.53 16 22 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 23 H 0.06 1.26 8.04 -51.93 -0.42 0.85 16 24 H 0.08 1.76 7.77 -51.93 -0.40 1.36 16 25 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 26 H 0.05 0.82 7.35 -51.93 -0.38 0.44 16 27 H 0.41 4.58 8.96 -34.47 -0.31 4.27 16 28 H 0.13 1.59 7.31 -51.93 -0.38 1.21 16 29 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 31 H 0.10 0.84 8.14 -51.92 -0.42 0.41 16 32 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.06 1.12 7.63 -51.93 -0.40 0.72 16 34 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 298.21 15.07 4.49 4.49 Total: -1.00 -30.36 298.21 -9.58 -39.93 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -4.78 Total: 2.42 kcal Atomic # 6 Polarization: -10.72 SS G_CDS: -1.82 Total: -12.54 kcal Atomic # 7 Polarization: -56.85 SS G_CDS: 0.25 Total: -56.61 kcal Atomic # 8 Polarization: -37.12 SS G_CDS: -2.01 Total: -39.13 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Atomic # 16 Polarization: 46.79 SS G_CDS: -0.68 Total: 46.10 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.36 -9.58 -39.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397671311.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.419 kcal (2) G-P(sol) polarization free energy of solvation -30.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds