Wall clock time and date at job start Mon Mar 30 2020 04:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00064 * 2 1 4 4 H 1.48500 * 109.47326 * 239.99618 * 3 2 1 5 5 H 1.48500 * 109.47030 * 0.02562 * 3 2 1 6 6 H 1.48510 * 109.47015 * 119.99966 * 3 2 1 7 7 C 1.37880 * 120.00280 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00443 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99779 * 0.02562 * 7 2 1 10 10 H 1.09003 * 110.64541 * 56.85138 * 9 7 2 11 11 C 1.55163 * 110.71683 * 293.51461 * 9 7 2 12 12 C 1.55133 * 101.48313 * 205.96957 * 11 9 7 13 13 N 1.47416 * 104.72240 * 37.30080 * 12 11 9 14 14 S 1.65608 * 125.64729 * 155.81734 * 13 12 11 15 15 O 1.42099 * 106.40241 * 23.22555 * 14 13 12 16 16 O 1.42097 * 106.39895 * 156.14630 * 14 13 12 17 17 N 1.65596 * 107.21450 * 269.68766 * 14 13 12 18 18 C 1.46496 * 120.00278 * 65.00189 * 17 14 13 19 19 C 1.53008 * 117.49910 * 213.62188 * 18 17 14 20 20 C 1.52998 * 117.50012 * 144.99887 * 18 17 14 21 21 C 1.47015 * 108.70536 * 335.54720 * 13 12 11 22 22 H 0.96995 * 119.99745 * 359.97438 * 1 2 3 23 23 H 1.08998 * 111.00422 * 324.21051 * 11 9 7 24 24 H 1.08996 * 110.99919 * 88.06475 * 11 9 7 25 25 H 1.09002 * 110.49718 * 278.44985 * 12 11 9 26 26 H 1.09001 * 110.33489 * 156.06324 * 12 11 9 27 27 H 0.97005 * 120.00011 * 245.00188 * 17 14 13 28 28 H 1.09002 * 115.55075 * 359.32915 * 18 17 14 29 29 H 1.08993 * 117.49924 * 359.97438 * 19 18 17 30 30 H 1.09000 * 117.50011 * 145.01998 * 19 18 17 31 31 H 1.09009 * 117.49800 * 214.98014 * 20 18 17 32 32 H 1.08998 * 117.50309 * 359.97438 * 20 18 17 33 33 H 1.09005 * 109.88587 * 120.70815 * 21 13 12 34 34 H 1.09001 * 109.88830 * 241.87074 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.5762 -2.5533 -0.8537 11 6 0.4747 -2.6847 1.3311 12 6 0.3767 -4.2304 1.4185 13 7 1.6650 -4.7178 0.8932 14 16 2.3594 -6.1797 1.2440 15 8 1.3028 -7.0387 1.6500 16 8 3.2326 -6.4787 0.1635 17 7 3.3203 -5.9592 2.5745 18 6 2.7186 -5.6017 3.8615 19 6 3.5223 -4.6860 4.7871 20 6 3.3658 -6.1698 5.1261 21 6 2.2281 -3.6938 0.0012 22 1 -0.4849 0.8400 0.0004 23 1 1.0367 -2.2772 2.1714 24 1 -0.5164 -2.2349 1.2710 25 1 -0.4463 -4.5961 0.8044 26 1 0.2465 -4.5437 2.4544 27 1 4.2816 -6.0668 2.5018 28 1 1.6345 -5.4884 3.8583 29 1 4.4989 -4.3500 4.4386 30 1 2.9670 -3.9700 5.3929 31 1 2.7075 -6.4299 5.9550 32 1 4.2390 -6.8099 5.0006 33 1 3.2028 -3.3753 0.3710 34 1 2.3250 -4.0939 -1.0081 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397671311.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:46 Heat of formation + Delta-G solvation = -76.197899 kcal Electronic energy + Delta-G solvation = -18264.498286 eV Core-core repulsion = 15323.754372 eV Total energy + Delta-G solvation = -2940.743914 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 260.098 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.19874 -38.71705 -38.26767 -37.02770 -34.82732 -33.06722 -31.49970 -30.01829 -26.56935 -23.22117 -23.15935 -22.94497 -21.60510 -20.61273 -19.11733 -18.77714 -18.05319 -17.47506 -16.51189 -16.38693 -16.11127 -15.58082 -14.71234 -14.47549 -14.19391 -13.84696 -13.66356 -13.36479 -13.30321 -13.21636 -13.14168 -13.06624 -12.96240 -12.65401 -12.43776 -12.33758 -12.10284 -11.56366 -11.31345 -11.24383 -10.89088 -10.46996 -10.04655 -9.88020 -8.10866 -6.19777 -0.49950 1.46730 1.47634 1.54697 1.83373 2.45685 2.50792 2.98560 3.19336 3.24595 3.81985 3.89312 3.99455 4.11452 4.12735 4.38827 4.49864 4.57121 4.71875 4.84472 4.92008 5.07760 5.12561 5.21539 5.29008 5.33262 5.39380 5.47031 5.66113 5.83839 5.94715 6.04837 6.34050 6.87825 7.47489 8.98493 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.024832 B = 0.006374 C = 0.005780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.326242 B = 4391.666901 C = 4843.464606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.019 3.981 3 Si 0.952 3.048 4 H -0.274 1.274 5 H -0.287 1.287 6 H -0.270 1.270 7 C -0.530 4.530 8 H 0.058 0.942 9 C 0.036 3.964 10 H 0.012 0.988 11 C -0.095 4.095 12 C 0.122 3.878 13 N -1.016 6.016 14 S 2.825 3.175 15 O -0.999 6.999 16 O -1.007 7.007 17 N -1.088 6.088 18 C 0.058 3.942 19 C -0.184 4.184 20 C -0.173 4.173 21 C 0.135 3.865 22 H 0.261 0.739 23 H 0.055 0.945 24 H 0.059 0.941 25 H 0.061 0.939 26 H 0.086 0.914 27 H 0.424 0.576 28 H 0.132 0.868 29 H 0.100 0.900 30 H 0.111 0.889 31 H 0.117 0.883 32 H 0.105 0.895 33 H 0.061 0.939 34 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.318 -9.008 10.038 14.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.181 4.181 3 Si 0.778 3.222 4 H -0.200 1.200 5 H -0.213 1.213 6 H -0.195 1.195 7 C -0.568 4.568 8 H 0.076 0.924 9 C 0.016 3.984 10 H 0.030 0.970 11 C -0.135 4.135 12 C -0.003 4.003 13 N -0.857 5.857 14 S 2.834 3.166 15 O -0.982 6.982 16 O -0.991 6.991 17 N -0.848 5.848 18 C -0.050 4.050 19 C -0.223 4.223 20 C -0.213 4.213 21 C 0.010 3.990 22 H 0.070 0.930 23 H 0.074 0.926 24 H 0.077 0.923 25 H 0.080 0.920 26 H 0.104 0.896 27 H 0.259 0.741 28 H 0.150 0.850 29 H 0.118 0.882 30 H 0.129 0.871 31 H 0.135 0.865 32 H 0.124 0.876 33 H 0.080 0.920 34 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.873 -9.806 9.558 14.535 hybrid contribution 0.704 1.366 -0.181 1.547 sum 5.577 -8.440 9.377 13.794 Atomic orbital electron populations 1.70048 1.07128 1.27428 1.50883 1.25665 0.95593 1.02137 0.94696 0.85702 0.78388 0.79267 0.78803 1.19960 1.21281 1.19485 1.21353 0.93057 0.91208 1.51187 0.92352 1.19667 0.93092 0.91448 0.94224 0.96950 1.22551 1.00379 0.91761 0.98797 1.22176 0.83959 0.95630 0.98538 1.58764 1.31889 1.35589 1.59445 1.00445 0.72222 0.71752 0.72224 1.93564 1.57307 1.63763 1.83584 1.93559 1.67496 1.84151 1.53937 1.55311 1.20863 1.86272 1.22327 1.21516 0.96873 1.06028 0.80535 1.23448 1.02381 0.94027 1.02437 1.23485 1.03705 0.96301 0.97765 1.21788 0.97625 0.87978 0.91593 0.92956 0.92645 0.92278 0.92017 0.89622 0.74067 0.85008 0.88206 0.87107 0.86458 0.87631 0.92031 0.93232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.49 12.50 21.45 0.27 -50.22 16 2 C 0.02 0.98 5.36 84.66 0.45 1.44 16 3 Si 0.95 41.59 29.54 68.60 2.03 43.62 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.29 -12.44 7.11 99.48 0.71 -11.73 16 6 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 7 C -0.53 -27.41 8.47 25.60 0.22 -27.19 16 8 H 0.06 2.94 7.53 -2.91 -0.02 2.92 16 9 C 0.04 1.69 2.78 -10.35 -0.03 1.66 16 10 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 11 C -0.10 -4.02 5.96 32.07 0.19 -3.83 16 12 C 0.12 4.22 6.99 86.94 0.61 4.82 16 13 N -1.02 -35.72 3.75 -506.02 -1.90 -37.62 16 14 S 2.82 90.34 6.37 -56.49 -0.36 89.98 16 15 O -1.00 -35.56 17.48 -128.00 -2.24 -37.79 16 16 O -1.01 -37.62 17.72 -128.00 -2.27 -39.88 16 17 N -1.09 -26.23 6.10 -169.39 -1.03 -27.26 16 18 C 0.06 1.25 6.49 44.99 0.29 1.54 16 19 C -0.18 -3.28 10.46 30.60 0.32 -2.96 16 20 C -0.17 -2.75 10.46 30.59 0.32 -2.43 16 21 C 0.14 5.46 6.57 86.73 0.57 6.03 16 22 H 0.26 13.82 8.31 -92.71 -0.77 13.05 16 23 H 0.05 2.34 8.04 -2.39 -0.02 2.33 16 24 H 0.06 2.70 7.77 -2.39 -0.02 2.68 16 25 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 26 H 0.09 2.43 7.35 -2.39 -0.02 2.41 16 27 H 0.42 8.44 8.96 -96.74 -0.87 7.58 16 28 H 0.13 2.83 7.31 -2.39 -0.02 2.81 16 29 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.12 1.51 8.14 -2.38 -0.02 1.49 16 32 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.06 2.40 7.63 -2.38 -0.02 2.38 16 34 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -63.89 298.21 -2.33 -66.21 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: 0.23 Total: 13.88 kcal Atomic # 6 Polarization: -23.85 SS G_CDS: 2.94 Total: -20.91 kcal Atomic # 7 Polarization: -112.44 SS G_CDS: -2.66 Total: -115.10 kcal Atomic # 8 Polarization: -73.17 SS G_CDS: -4.51 Total: -77.68 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.62 kcal Atomic # 16 Polarization: 90.34 SS G_CDS: -0.36 Total: 89.98 kcal Total: -63.89 -2.33 -66.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397671311.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.986 kcal (2) G-P(sol) polarization free energy of solvation -63.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds