Wall clock time and date at job start Mon Mar 30 2020 04:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47375 * 2 1 4 4 C 1.52997 * 109.47232 * 119.99867 * 2 1 3 5 5 C 1.50695 * 109.46942 * 294.99835 * 4 2 1 6 6 H 1.07997 * 120.00519 * 0.02562 * 5 4 2 7 7 C 1.37888 * 119.99951 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99548 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 119.99928 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47412 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47171 * 120.00158 * 9 7 5 12 12 H 1.48508 * 109.47089 * 239.99872 * 9 7 5 13 13 C 1.50706 * 109.47103 * 240.00064 * 2 1 3 14 14 N 1.30975 * 126.44027 * 120.00361 * 13 2 1 15 15 C 1.35212 * 105.57652 * 179.97438 * 14 13 2 16 16 C 1.48429 * 126.41082 * 179.97438 * 15 14 13 17 17 C 1.39686 * 120.91571 * 359.72468 * 16 15 14 18 18 N 1.32197 * 118.95374 * 179.78220 * 17 16 15 19 19 C 1.31830 * 120.94065 * 0.48009 * 18 17 16 20 20 N 1.31828 * 122.04127 * 359.76809 * 19 18 17 21 21 C 1.32203 * 120.93859 * 359.97438 * 20 19 18 22 22 N 1.30754 * 107.17486 * 359.97438 * 15 14 13 23 23 O 1.21287 * 110.10040 * 359.70533 * 22 15 14 24 24 H 1.09002 * 109.46777 * 300.00555 * 1 2 3 25 25 H 1.09000 * 109.47140 * 59.99983 * 1 2 3 26 26 H 1.08992 * 109.47280 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46934 * 54.99884 * 4 2 1 28 28 H 1.08998 * 109.47192 * 174.99730 * 4 2 1 29 29 H 0.97002 * 119.99896 * 180.02562 * 8 7 5 30 30 H 1.08002 * 120.52542 * 359.97438 * 17 16 15 31 31 H 1.08012 * 118.98000 * 179.75036 * 19 18 17 32 32 H 1.07997 * 120.52223 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6414 0.0571 2.4765 6 1 1.0800 0.9742 2.3757 7 6 1.9924 -0.4021 3.7283 8 7 2.6755 -1.5192 3.8511 9 14 1.4977 0.5623 5.2496 10 1 0.7414 1.7741 4.8434 11 1 0.6434 -0.2870 6.1180 12 1 2.7155 0.9669 5.9970 13 6 2.0323 -0.7104 -1.2305 14 7 2.7884 -0.1991 -2.1699 15 6 2.9830 -1.1962 -3.0622 16 6 3.7773 -1.1160 -4.3135 17 6 4.4153 0.0701 -4.6838 18 7 5.1163 0.0969 -5.8043 19 6 5.2095 -0.9713 -6.5712 20 7 4.6191 -2.1085 -6.2612 21 6 3.9027 -2.2232 -5.1560 22 7 2.3405 -2.2441 -2.6164 23 8 1.7959 -1.9829 -1.5647 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.6054 -1.7197 1.2951 28 1 3.1263 -0.7995 1.2055 29 1 2.9222 -1.8425 4.7318 30 1 4.3397 0.9506 -4.0630 31 1 5.7873 -0.9129 -7.4819 32 1 3.4216 -3.1579 -4.9088 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398513659.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:49 Heat of formation + Delta-G solvation = 102.806912 kcal Electronic energy + Delta-G solvation = -18177.515188 eV Core-core repulsion = 15141.382305 eV Total energy + Delta-G solvation = -3036.132883 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.101 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -45.32633 -41.19543 -36.12094 -35.65347 -34.07843 -33.04576 -32.12484 -30.62414 -27.22216 -25.69265 -25.25610 -24.38822 -23.16727 -22.34197 -20.02122 -17.96774 -17.83120 -17.71149 -17.00402 -16.53458 -15.66840 -15.07047 -14.63080 -14.56368 -13.95961 -13.85654 -13.48330 -12.72535 -12.42059 -12.10743 -11.97555 -11.59447 -11.43440 -11.15005 -11.05723 -11.04476 -10.84258 -10.69709 -10.45485 -10.20336 -9.66247 -9.56701 -9.31204 -9.14625 -8.50731 -6.14422 -4.18712 0.18628 0.74809 1.50453 2.48232 3.11236 3.24507 3.32746 3.34996 3.39568 3.53762 3.78010 3.84662 4.08207 4.24098 4.35474 4.80861 5.05538 5.19990 5.22361 5.55441 5.60704 5.71807 5.76796 5.97919 6.06648 6.12202 6.45013 6.55899 6.60380 6.74485 7.39922 7.47360 7.70560 7.80653 8.15817 8.29930 8.85791 9.46342 10.96862 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.042227 B = 0.003812 C = 0.003774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.915949 B = 7342.753040 C = 7416.837203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.003 4.003 3 H 0.109 0.891 4 C 0.028 3.972 5 C -0.522 4.522 6 H 0.064 0.936 7 C 0.060 3.940 8 N -0.890 5.890 9 Si 0.895 3.105 10 H -0.271 1.271 11 H -0.283 1.283 12 H -0.284 1.284 13 C 0.232 3.768 14 N -0.493 5.493 15 C 0.202 3.798 16 C -0.112 4.112 17 C 0.192 3.808 18 N -0.518 5.518 19 C 0.299 3.701 20 N -0.518 5.518 21 C 0.182 3.818 22 N -0.381 5.381 23 O 0.088 5.912 24 H 0.087 0.913 25 H 0.041 0.959 26 H 0.059 0.941 27 H 0.030 0.970 28 H 0.022 0.978 29 H 0.263 0.737 30 H 0.182 0.818 31 H 0.201 0.799 32 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.346 1.434 -15.237 15.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.023 4.023 3 H 0.127 0.873 4 C -0.010 4.010 5 C -0.560 4.560 6 H 0.082 0.918 7 C -0.142 4.142 8 N -0.529 5.529 9 Si 0.723 3.277 10 H -0.195 1.195 11 H -0.209 1.209 12 H -0.210 1.210 13 C 0.013 3.987 14 N -0.226 5.226 15 C -0.070 4.070 16 C -0.118 4.118 17 C 0.024 3.976 18 N -0.231 5.231 19 C 0.012 3.988 20 N -0.231 5.231 21 C 0.015 3.985 22 N -0.089 5.089 23 O 0.028 5.972 24 H 0.105 0.895 25 H 0.060 0.940 26 H 0.078 0.922 27 H 0.048 0.952 28 H 0.041 0.959 29 H 0.072 0.928 30 H 0.199 0.801 31 H 0.218 0.782 32 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 1.187 0.915 -16.585 16.652 hybrid contribution -0.633 0.333 1.837 1.972 sum 0.553 1.248 -14.747 14.810 Atomic orbital electron populations 1.21794 0.92791 1.02672 1.02135 1.20454 0.96722 0.98968 0.86192 0.87322 1.19266 0.96910 0.96138 0.88690 1.21074 1.35982 1.08730 0.90242 0.91828 1.25007 0.94908 0.95016 0.99282 1.69969 1.38157 1.20958 1.23796 0.86481 0.78347 0.80020 0.82843 1.19543 1.20938 1.20981 1.29632 0.90805 0.81243 0.97054 1.72010 1.18387 1.28850 1.03348 1.23305 1.00054 0.86720 0.96884 1.19139 1.01431 0.97972 0.93283 1.23479 0.86363 0.96650 0.91058 1.68560 1.17777 1.31288 1.05428 1.25192 0.92507 0.83324 0.97820 1.68528 1.09480 1.27476 1.17618 1.23378 0.90207 0.97736 0.87226 1.74816 1.12729 1.22949 0.98390 1.85285 1.54087 1.29973 1.27894 0.89463 0.93993 0.92212 0.95162 0.95931 0.92776 0.80081 0.78207 0.80683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 8.99 37.16 0.33 -1.83 16 2 C 0.00 -0.05 2.81 -91.77 -0.26 -0.31 16 3 H 0.11 1.92 8.14 -51.93 -0.42 1.50 16 4 C 0.03 0.65 4.43 -27.89 -0.12 0.52 16 5 C -0.52 -13.18 8.41 -34.44 -0.29 -13.47 16 6 H 0.06 1.52 7.05 -52.49 -0.37 1.15 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 8 N -0.89 -25.24 13.29 55.43 0.74 -24.50 16 9 Si 0.90 20.23 29.54 -169.99 -5.02 15.21 16 10 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 11 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 13 C 0.23 4.15 7.00 -12.99 -0.09 4.06 16 14 N -0.49 -8.56 11.36 -9.88 -0.11 -8.67 16 15 C 0.20 3.27 7.83 -156.13 -1.22 2.05 16 16 C -0.11 -1.52 5.91 -104.61 -0.62 -2.14 16 17 C 0.19 2.39 11.00 -16.85 -0.19 2.21 16 18 N -0.52 -6.09 10.42 -14.32 -0.15 -6.23 16 19 C 0.30 3.07 12.27 -92.09 -1.13 1.94 16 20 N -0.52 -6.04 10.43 -14.31 -0.15 -6.18 16 21 C 0.18 2.23 10.99 -16.85 -0.19 2.05 16 22 N -0.38 -6.53 11.95 30.96 0.37 -6.16 16 23 O 0.09 1.59 11.29 18.04 0.20 1.79 16 24 H 0.09 1.42 6.95 -51.93 -0.36 1.06 16 25 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 27 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 30 H 0.18 2.08 7.97 -52.49 -0.42 1.66 16 31 H 0.20 1.27 8.06 -52.48 -0.42 0.85 16 32 H 0.18 1.93 7.96 -52.49 -0.42 1.51 16 LS Contribution 291.70 15.07 4.40 4.40 Total: -1.00 -28.93 291.70 -6.83 -35.76 By element: Atomic # 1 Polarization: 1.25 SS G_CDS: -3.24 Total: -1.99 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: -3.87 Total: -3.42 kcal Atomic # 7 Polarization: -52.45 SS G_CDS: 0.70 Total: -51.76 kcal Atomic # 8 Polarization: 1.59 SS G_CDS: 0.20 Total: 1.79 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -28.93 -6.83 -35.76 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398513659.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.568 kcal (2) G-P(sol) polarization free energy of solvation -28.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds