Wall clock time and date at job start Mon Mar 30 2020 04:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47375 * 2 1 4 4 C 1.52997 * 109.47232 * 119.99867 * 2 1 3 5 5 C 1.50695 * 109.46942 * 294.99835 * 4 2 1 6 6 H 1.07997 * 120.00519 * 0.02562 * 5 4 2 7 7 C 1.37888 * 119.99951 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99548 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 119.99928 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47412 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47171 * 120.00158 * 9 7 5 12 12 H 1.48508 * 109.47089 * 239.99872 * 9 7 5 13 13 C 1.50706 * 109.47103 * 240.00064 * 2 1 3 14 14 N 1.30975 * 126.44027 * 120.00361 * 13 2 1 15 15 C 1.35212 * 105.57652 * 179.97438 * 14 13 2 16 16 C 1.48429 * 126.41082 * 179.97438 * 15 14 13 17 17 C 1.39686 * 120.91571 * 359.72468 * 16 15 14 18 18 N 1.32197 * 118.95374 * 179.78220 * 17 16 15 19 19 C 1.31830 * 120.94065 * 0.48009 * 18 17 16 20 20 N 1.31828 * 122.04127 * 359.76809 * 19 18 17 21 21 C 1.32203 * 120.93859 * 359.97438 * 20 19 18 22 22 N 1.30754 * 107.17486 * 359.97438 * 15 14 13 23 23 O 1.21287 * 110.10040 * 359.70533 * 22 15 14 24 24 H 1.09002 * 109.46777 * 300.00555 * 1 2 3 25 25 H 1.09000 * 109.47140 * 59.99983 * 1 2 3 26 26 H 1.08992 * 109.47280 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46934 * 54.99884 * 4 2 1 28 28 H 1.08998 * 109.47192 * 174.99730 * 4 2 1 29 29 H 0.97002 * 119.99896 * 180.02562 * 8 7 5 30 30 H 1.08002 * 120.52542 * 359.97438 * 17 16 15 31 31 H 1.08012 * 118.98000 * 179.75036 * 19 18 17 32 32 H 1.07997 * 120.52223 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6414 0.0571 2.4765 6 1 1.0800 0.9742 2.3757 7 6 1.9924 -0.4021 3.7283 8 7 2.6755 -1.5192 3.8511 9 14 1.4977 0.5623 5.2496 10 1 0.7414 1.7741 4.8434 11 1 0.6434 -0.2870 6.1180 12 1 2.7155 0.9669 5.9970 13 6 2.0323 -0.7104 -1.2305 14 7 2.7884 -0.1991 -2.1699 15 6 2.9830 -1.1962 -3.0622 16 6 3.7773 -1.1160 -4.3135 17 6 4.4153 0.0701 -4.6838 18 7 5.1163 0.0969 -5.8043 19 6 5.2095 -0.9713 -6.5712 20 7 4.6191 -2.1085 -6.2612 21 6 3.9027 -2.2232 -5.1560 22 7 2.3405 -2.2441 -2.6164 23 8 1.7959 -1.9829 -1.5647 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.6054 -1.7197 1.2951 28 1 3.1263 -0.7995 1.2055 29 1 2.9222 -1.8425 4.7318 30 1 4.3397 0.9506 -4.0630 31 1 5.7873 -0.9129 -7.4819 32 1 3.4216 -3.1579 -4.9088 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398513659.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:49 Heat of formation + Delta-G solvation = 84.749008 kcal Electronic energy + Delta-G solvation = -18178.298237 eV Core-core repulsion = 15141.382305 eV Total energy + Delta-G solvation = -3036.915933 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.101 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -46.66721 -42.12110 -37.60332 -37.03548 -35.01442 -34.67873 -33.53809 -31.94163 -28.99298 -26.75071 -26.50734 -25.72368 -24.48922 -23.83580 -21.44785 -19.19951 -18.96069 -18.67173 -18.62419 -18.04805 -16.88788 -16.48465 -16.10604 -15.99929 -15.04684 -14.81981 -14.76850 -14.42607 -13.89589 -13.67393 -13.30982 -13.05098 -12.78983 -12.67373 -12.47879 -12.31154 -12.23566 -12.06697 -12.04424 -11.77449 -11.22181 -11.19617 -10.54779 -10.49297 -10.37889 -8.16958 -6.26984 -0.82044 -0.19598 0.15420 1.22425 1.47000 1.48889 1.60541 1.73219 2.18867 2.45963 2.59882 2.66737 3.01084 3.07235 3.19308 3.28575 3.65893 3.97309 4.17896 4.25715 4.28820 4.38600 4.63265 4.69392 4.73270 5.06255 5.09213 5.13033 5.39763 5.43104 5.59998 5.66003 5.81669 6.17776 6.80555 6.87723 6.93920 7.42522 8.95674 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.042227 B = 0.003812 C = 0.003774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.915949 B = 7342.753040 C = 7416.837203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.008 3.992 3 H 0.118 0.882 4 C 0.034 3.966 5 C -0.526 4.526 6 H 0.080 0.920 7 C 0.001 3.999 8 N -0.935 5.935 9 Si 0.964 3.036 10 H -0.253 1.253 11 H -0.283 1.283 12 H -0.286 1.286 13 C 0.226 3.774 14 N -0.497 5.497 15 C 0.212 3.788 16 C -0.137 4.137 17 C 0.198 3.802 18 N -0.526 5.526 19 C 0.309 3.691 20 N -0.526 5.526 21 C 0.190 3.810 22 N -0.391 5.391 23 O 0.072 5.928 24 H 0.084 0.916 25 H 0.070 0.930 26 H 0.056 0.944 27 H 0.007 0.993 28 H -0.011 1.011 29 H 0.262 0.738 30 H 0.187 0.813 31 H 0.241 0.759 32 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.076 2.749 -16.530 16.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.012 4.012 3 H 0.136 0.864 4 C -0.004 4.004 5 C -0.564 4.564 6 H 0.098 0.902 7 C -0.197 4.197 8 N -0.575 5.575 9 Si 0.789 3.211 10 H -0.177 1.177 11 H -0.209 1.209 12 H -0.212 1.212 13 C 0.006 3.994 14 N -0.230 5.230 15 C -0.060 4.060 16 C -0.143 4.143 17 C 0.030 3.970 18 N -0.239 5.239 19 C 0.023 3.977 20 N -0.239 5.239 21 C 0.022 3.978 22 N -0.101 5.101 23 O 0.015 5.985 24 H 0.103 0.897 25 H 0.089 0.911 26 H 0.075 0.925 27 H 0.025 0.975 28 H 0.007 0.993 29 H 0.071 0.929 30 H 0.204 0.796 31 H 0.257 0.743 32 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 0.894 2.242 -17.880 18.043 hybrid contribution -0.453 -0.093 2.079 2.130 sum 0.441 2.149 -15.802 15.953 Atomic orbital electron populations 1.21754 0.90673 1.02969 1.03401 1.20223 0.98383 0.98497 0.84134 0.86434 1.19060 0.94702 0.95546 0.91050 1.21541 1.35020 1.09026 0.90788 0.90207 1.25930 0.95056 0.95927 1.02770 1.70114 1.40032 1.22985 1.24414 0.85409 0.77852 0.79054 0.78805 1.17675 1.20922 1.21250 1.29503 0.91205 0.81393 0.97268 1.72000 1.18120 1.29314 1.03557 1.23711 0.99198 0.85943 0.97147 1.19161 1.02932 0.99196 0.93017 1.23596 0.85697 0.96394 0.91264 1.68671 1.17970 1.31909 1.05374 1.26036 0.91137 0.82292 0.98245 1.68648 1.09860 1.28123 1.17294 1.23528 0.89660 0.97611 0.87020 1.74802 1.13613 1.23343 0.98383 1.85270 1.54688 1.30046 1.28479 0.89670 0.91138 0.92466 0.97483 0.99268 0.92918 0.79575 0.74293 0.79969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.96 8.99 71.98 0.65 -3.32 16 2 C 0.01 0.29 2.81 -11.54 -0.03 0.26 16 3 H 0.12 4.05 8.14 -2.39 -0.02 4.03 16 4 C 0.03 1.64 4.43 29.85 0.13 1.78 16 5 C -0.53 -26.55 8.41 25.60 0.22 -26.33 16 6 H 0.08 3.69 7.05 -2.91 -0.02 3.67 16 7 C 0.00 0.06 5.46 84.66 0.46 0.52 16 8 N -0.94 -54.36 13.29 21.45 0.28 -54.08 16 9 Si 0.96 41.37 29.54 68.60 2.03 43.40 16 10 H -0.25 -10.05 7.11 99.48 0.71 -9.35 16 11 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 12 H -0.29 -12.32 7.11 99.48 0.71 -11.62 16 13 C 0.23 8.09 7.00 88.36 0.62 8.71 16 14 N -0.50 -17.03 11.36 -302.53 -3.44 -20.47 16 15 C 0.21 6.78 7.83 137.30 1.08 7.86 16 16 C -0.14 -3.57 5.91 -19.86 -0.12 -3.69 16 17 C 0.20 4.65 11.00 84.99 0.93 5.58 16 18 N -0.53 -11.19 10.42 -199.20 -2.08 -13.27 16 19 C 0.31 5.47 12.27 180.86 2.22 7.69 16 20 N -0.53 -11.10 10.43 -199.20 -2.08 -13.17 16 21 C 0.19 4.39 10.99 84.99 0.93 5.32 16 22 N -0.39 -13.43 11.95 -59.17 -0.71 -14.13 16 23 O 0.07 2.62 11.29 74.61 0.84 3.46 16 24 H 0.08 2.63 6.95 -2.39 -0.02 2.61 16 25 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 26 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 28 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 29 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 30 H 0.19 4.06 7.97 -2.91 -0.02 4.03 16 31 H 0.24 2.09 8.06 -2.90 -0.02 2.07 16 32 H 0.18 3.84 7.96 -2.91 -0.02 3.81 16 Total: -1.00 -62.20 291.70 3.09 -59.11 By element: Atomic # 1 Polarization: 3.61 SS G_CDS: 1.15 Total: 4.76 kcal Atomic # 6 Polarization: -2.71 SS G_CDS: 7.09 Total: 4.38 kcal Atomic # 7 Polarization: -107.11 SS G_CDS: -8.01 Total: -115.12 kcal Atomic # 8 Polarization: 2.62 SS G_CDS: 0.84 Total: 3.46 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.40 kcal Total: -62.20 3.09 -59.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398513659.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.861 kcal (2) G-P(sol) polarization free energy of solvation -62.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds