Wall clock time and date at job start Mon Mar 30 2020 05:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86803 * 119.99953 * 2 1 4 4 H 1.48504 * 109.47196 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47423 * 300.00396 * 3 2 1 6 6 H 1.48506 * 109.46765 * 60.00337 * 3 2 1 7 7 C 1.39946 * 120.00197 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00009 * 197.86611 * 7 2 1 9 9 C 1.41393 * 119.99984 * 17.86158 * 7 2 1 10 10 C 1.40715 * 120.24455 * 24.38752 * 9 7 2 11 11 C 1.37618 * 119.74494 * 180.02562 * 10 9 7 12 12 C 1.38635 * 120.24843 * 359.97213 * 11 10 9 13 13 C 1.50704 * 119.74658 * 180.02562 * 12 11 10 14 14 N 1.46893 * 109.47327 * 90.00288 * 13 12 11 15 15 C 1.46898 * 111.00157 * 179.97438 * 14 13 12 16 16 H 1.09003 * 110.85566 * 325.70092 * 15 14 13 17 17 C 1.54479 * 110.97073 * 201.90729 * 15 14 13 18 18 N 1.46762 * 105.47313 * 216.46358 * 17 15 14 19 19 C 1.34415 * 111.30019 * 17.01754 * 18 17 15 20 20 O 1.21287 * 124.93894 * 179.61724 * 19 18 17 21 21 C 1.51337 * 110.13311 * 359.56182 * 19 18 17 22 22 C 1.38636 * 120.49954 * 0.30184 * 12 11 10 23 23 C 1.37616 * 120.24700 * 359.44384 * 22 12 11 24 24 H 0.97004 * 119.99892 * 359.97438 * 1 2 3 25 25 H 1.08000 * 120.12735 * 359.97438 * 10 9 7 26 26 H 1.07999 * 119.87343 * 180.02562 * 11 10 9 27 27 H 1.08997 * 109.47088 * 329.99366 * 13 12 11 28 28 H 1.09002 * 109.46235 * 210.00216 * 13 12 11 29 29 H 1.00907 * 111.00029 * 303.94837 * 14 13 12 30 30 H 1.08995 * 110.24625 * 335.46480 * 17 15 14 31 31 H 1.09000 * 110.24471 * 97.46324 * 17 15 14 32 32 H 0.97007 * 124.34900 * 197.03920 * 18 17 15 33 33 H 1.09001 * 110.52388 * 225.12112 * 21 19 18 34 34 H 1.09002 * 110.48128 * 102.45465 * 21 19 18 35 35 H 1.07997 * 119.87152 * 179.70683 * 22 12 11 36 36 H 1.08002 * 120.12307 * 180.27309 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3464 -0.0006 5 1 1.8834 2.3966 -1.2125 6 1 1.8834 2.3964 1.2126 7 6 2.0080 -1.2119 -0.0005 8 1 3.0489 -1.2346 0.2864 9 6 1.3522 -2.4068 -0.3767 10 6 0.2210 -2.3616 -1.2124 11 6 -0.4097 -3.5308 -1.5717 12 6 0.0658 -4.7499 -1.1138 13 6 -0.6333 -6.0234 -1.5147 14 7 -0.0421 -6.5361 -2.7579 15 6 -0.6996 -7.7801 -3.1797 16 1 -1.0017 -8.3717 -2.3154 17 6 0.2152 -8.5985 -4.1175 18 7 -0.6824 -9.2089 -5.1054 19 6 -1.8800 -8.5987 -5.1196 20 8 -2.8039 -8.8990 -5.8458 21 6 -1.9086 -7.4835 -4.0970 22 6 1.1760 -4.8060 -0.2854 23 6 1.8255 -3.6498 0.0824 24 1 -0.4850 0.8401 0.0004 25 1 -0.1513 -1.4129 -1.5699 26 1 -1.2778 -3.4985 -2.2134 27 1 -1.6929 -5.8222 -1.6722 28 1 -0.5179 -6.7653 -0.7245 29 1 -0.0786 -5.8416 -3.4890 30 1 0.9311 -7.9427 -4.6129 31 1 0.7379 -9.3716 -3.5543 32 1 -0.4423 -9.9568 -5.6746 33 1 -2.8367 -7.5122 -3.5262 34 1 -1.7892 -6.5159 -4.5845 35 1 1.5349 -5.7608 0.0692 36 1 2.6929 -3.6962 0.7243 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398997269.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:35 Heat of formation + Delta-G solvation = -22.540536 kcal Electronic energy + Delta-G solvation = -18293.119998 eV Core-core repulsion = 15355.091985 eV Total energy + Delta-G solvation = -2938.028013 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.39714 -37.88379 -36.89117 -34.87953 -33.52548 -30.93103 -29.37513 -29.06702 -27.54540 -25.82516 -23.14625 -21.35805 -20.98524 -20.69547 -19.89116 -17.56817 -17.32608 -16.49592 -15.66366 -15.23836 -14.86633 -14.39754 -14.17142 -13.94391 -13.67625 -13.41079 -13.27969 -12.76679 -12.56340 -12.19017 -11.97560 -11.65165 -11.49796 -11.37185 -11.06903 -10.98330 -10.59353 -10.42424 -10.11589 -9.61327 -9.43358 -9.28121 -9.16650 -8.25975 -7.49195 -7.34465 -6.80510 -4.38818 2.45433 2.68235 3.04060 3.06091 3.09434 3.12087 3.22201 3.90109 4.09716 4.33172 4.47888 4.64703 4.86380 5.03759 5.36108 5.42728 5.60195 5.64971 5.74344 5.77744 5.87074 6.22673 6.32232 6.37211 6.60672 6.80023 6.91144 7.03978 7.18486 7.22947 7.34190 7.52252 7.58739 7.84545 8.02473 8.08380 8.09183 8.27049 8.60749 8.86287 8.94217 10.13922 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.042866 B = 0.003478 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.040649 B = 8048.642221 C = 8317.565596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.076 3.924 3 Si 0.907 3.093 4 H -0.260 1.260 5 H -0.272 1.272 6 H -0.275 1.275 7 C -0.462 4.462 8 H 0.078 0.922 9 C 0.113 3.887 10 C -0.167 4.167 11 C -0.094 4.094 12 C -0.219 4.219 13 C 0.125 3.875 14 N -0.670 5.670 15 C 0.077 3.923 16 H 0.098 0.902 17 C 0.107 3.893 18 N -0.733 5.733 19 C 0.522 3.478 20 O -0.543 6.543 21 C -0.190 4.190 22 C -0.067 4.067 23 C -0.229 4.229 24 H 0.280 0.720 25 H 0.117 0.883 26 H 0.083 0.917 27 H 0.024 0.976 28 H 0.064 0.936 29 H 0.346 0.654 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.408 0.592 33 H 0.101 0.899 34 H 0.106 0.894 35 H 0.088 0.912 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.044 -10.548 -4.911 11.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.142 4.142 3 Si 0.731 3.269 4 H -0.184 1.184 5 H -0.197 1.197 6 H -0.200 1.200 7 C -0.491 4.491 8 H 0.096 0.904 9 C 0.111 3.889 10 C -0.186 4.186 11 C -0.113 4.113 12 C -0.221 4.221 13 C -0.002 4.002 14 N -0.301 5.301 15 C -0.035 4.035 16 H 0.116 0.884 17 C -0.018 4.018 18 N -0.388 5.388 19 C 0.308 3.692 20 O -0.420 6.420 21 C -0.232 4.232 22 C -0.086 4.086 23 C -0.249 4.249 24 H 0.091 0.909 25 H 0.134 0.866 26 H 0.101 0.899 27 H 0.042 0.958 28 H 0.083 0.917 29 H 0.165 0.835 30 H 0.099 0.901 31 H 0.101 0.899 32 H 0.247 0.753 33 H 0.119 0.881 34 H 0.124 0.876 35 H 0.106 0.894 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.241 -10.752 -4.855 11.799 hybrid contribution -0.355 0.869 -0.485 1.057 sum -0.596 -9.882 -5.340 11.249 Atomic orbital electron populations 1.69833 1.07611 1.29143 1.35123 1.25919 0.94712 1.01358 0.92202 0.86289 0.81059 0.80978 0.78570 1.18365 1.19694 1.20000 1.19652 0.98193 0.91332 1.39959 0.90399 1.17636 0.90991 0.92044 0.88262 1.21282 0.99388 0.96707 1.01254 1.20524 0.98313 0.92919 0.99550 1.18840 1.01999 0.92216 1.09022 1.20597 0.94497 0.95038 0.90111 1.60617 1.56588 1.05475 1.07457 1.22539 0.90545 0.93982 0.96448 0.88426 1.22151 0.92570 0.97272 0.89789 1.46286 1.14817 1.36193 1.41547 1.20885 0.81847 0.83159 0.83277 1.90743 1.38868 1.68192 1.44183 1.23220 1.02683 0.99125 0.98147 1.20329 0.94850 0.96267 0.97140 1.20974 1.03784 0.92981 1.07145 0.90913 0.86562 0.89883 0.95782 0.91740 0.83452 0.90084 0.89913 0.75349 0.88097 0.87610 0.89426 0.89102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.04 10.95 55.55 0.61 -19.43 16 2 C 0.08 1.87 5.14 -17.34 -0.09 1.78 16 3 Si 0.91 18.26 29.59 -169.99 -5.03 13.23 16 4 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 5 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 6 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 7 C -0.46 -12.00 9.05 -37.74 -0.34 -12.35 16 8 H 0.08 1.96 7.91 -52.49 -0.42 1.54 16 9 C 0.11 2.93 5.57 -106.83 -0.60 2.34 16 10 C -0.17 -4.17 8.70 -38.87 -0.34 -4.51 16 11 C -0.09 -2.05 9.67 -39.66 -0.38 -2.43 16 12 C -0.22 -4.37 5.42 -104.33 -0.56 -4.93 16 13 C 0.12 1.91 5.68 -4.98 -0.03 1.88 16 14 N -0.67 -8.64 6.33 -106.27 -0.67 -9.31 16 15 C 0.08 0.78 3.45 -66.08 -0.23 0.55 16 16 H 0.10 0.94 7.87 -51.93 -0.41 0.53 16 17 C 0.11 0.92 7.52 -3.12 -0.02 0.89 16 18 N -0.73 -6.82 6.24 -59.18 -0.37 -7.19 16 19 C 0.52 6.47 8.43 -10.83 -0.09 6.38 16 20 O -0.54 -8.96 18.03 5.55 0.10 -8.86 16 21 C -0.19 -2.01 6.55 -26.71 -0.18 -2.19 16 22 C -0.07 -1.42 9.67 -39.66 -0.38 -1.80 16 23 C -0.23 -5.45 9.80 -38.87 -0.38 -5.83 16 24 H 0.28 6.43 8.30 -40.82 -0.34 6.09 16 25 H 0.12 3.03 6.15 -52.49 -0.32 2.71 16 26 H 0.08 1.63 8.06 -52.49 -0.42 1.20 16 27 H 0.02 0.35 8.08 -51.93 -0.42 -0.07 16 28 H 0.06 0.94 8.02 -51.93 -0.42 0.52 16 29 H 0.35 4.54 8.14 -39.29 -0.32 4.22 16 30 H 0.08 0.71 8.07 -51.93 -0.42 0.29 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.41 3.10 8.96 -40.82 -0.37 2.73 16 33 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.11 1.11 7.61 -51.93 -0.40 0.72 16 35 H 0.09 1.65 8.06 -52.49 -0.42 1.23 16 36 H 0.09 2.05 8.06 -52.49 -0.42 1.63 16 LS Contribution 306.69 15.07 4.62 4.62 Total: -1.00 -28.75 306.69 -9.10 -37.85 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -4.73 Total: 9.32 kcal Atomic # 6 Polarization: -16.61 SS G_CDS: -3.62 Total: -20.23 kcal Atomic # 7 Polarization: -35.50 SS G_CDS: -0.43 Total: -35.93 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: 0.10 Total: -8.86 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -5.03 Total: 13.23 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -28.75 -9.10 -37.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398997269.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.310 kcal (2) G-P(sol) polarization free energy of solvation -28.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds