Wall clock time and date at job start Mon Mar 30 2020 05:15:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86803 * 119.99953 * 2 1 4 4 H 1.48504 * 109.47196 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47423 * 300.00396 * 3 2 1 6 6 H 1.48506 * 109.46765 * 60.00337 * 3 2 1 7 7 C 1.39946 * 120.00197 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00009 * 197.86611 * 7 2 1 9 9 C 1.41393 * 119.99984 * 17.86158 * 7 2 1 10 10 C 1.40715 * 120.24455 * 24.38752 * 9 7 2 11 11 C 1.37618 * 119.74494 * 180.02562 * 10 9 7 12 12 C 1.38635 * 120.24843 * 359.97213 * 11 10 9 13 13 C 1.50704 * 119.74658 * 180.02562 * 12 11 10 14 14 N 1.46893 * 109.47327 * 90.00288 * 13 12 11 15 15 C 1.46898 * 111.00157 * 179.97438 * 14 13 12 16 16 H 1.09003 * 110.85566 * 325.70092 * 15 14 13 17 17 C 1.54479 * 110.97073 * 201.90729 * 15 14 13 18 18 N 1.46762 * 105.47313 * 216.46358 * 17 15 14 19 19 C 1.34415 * 111.30019 * 17.01754 * 18 17 15 20 20 O 1.21287 * 124.93894 * 179.61724 * 19 18 17 21 21 C 1.51337 * 110.13311 * 359.56182 * 19 18 17 22 22 C 1.38636 * 120.49954 * 0.30184 * 12 11 10 23 23 C 1.37616 * 120.24700 * 359.44384 * 22 12 11 24 24 H 0.97004 * 119.99892 * 359.97438 * 1 2 3 25 25 H 1.08000 * 120.12735 * 359.97438 * 10 9 7 26 26 H 1.07999 * 119.87343 * 180.02562 * 11 10 9 27 27 H 1.08997 * 109.47088 * 329.99366 * 13 12 11 28 28 H 1.09002 * 109.46235 * 210.00216 * 13 12 11 29 29 H 1.00907 * 111.00029 * 303.94837 * 14 13 12 30 30 H 1.08995 * 110.24625 * 335.46480 * 17 15 14 31 31 H 1.09000 * 110.24471 * 97.46324 * 17 15 14 32 32 H 0.97007 * 124.34900 * 197.03920 * 18 17 15 33 33 H 1.09001 * 110.52388 * 225.12112 * 21 19 18 34 34 H 1.09002 * 110.48128 * 102.45465 * 21 19 18 35 35 H 1.07997 * 119.87152 * 179.70683 * 22 12 11 36 36 H 1.08002 * 120.12307 * 180.27309 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3464 -0.0006 5 1 1.8834 2.3966 -1.2125 6 1 1.8834 2.3964 1.2126 7 6 2.0080 -1.2119 -0.0005 8 1 3.0489 -1.2346 0.2864 9 6 1.3522 -2.4068 -0.3767 10 6 0.2210 -2.3616 -1.2124 11 6 -0.4097 -3.5308 -1.5717 12 6 0.0658 -4.7499 -1.1138 13 6 -0.6333 -6.0234 -1.5147 14 7 -0.0421 -6.5361 -2.7579 15 6 -0.6996 -7.7801 -3.1797 16 1 -1.0017 -8.3717 -2.3154 17 6 0.2152 -8.5985 -4.1175 18 7 -0.6824 -9.2089 -5.1054 19 6 -1.8800 -8.5987 -5.1196 20 8 -2.8039 -8.8990 -5.8458 21 6 -1.9086 -7.4835 -4.0970 22 6 1.1760 -4.8060 -0.2854 23 6 1.8255 -3.6498 0.0824 24 1 -0.4850 0.8401 0.0004 25 1 -0.1513 -1.4129 -1.5699 26 1 -1.2778 -3.4985 -2.2134 27 1 -1.6929 -5.8222 -1.6722 28 1 -0.5179 -6.7653 -0.7245 29 1 -0.0786 -5.8416 -3.4890 30 1 0.9311 -7.9427 -4.6129 31 1 0.7379 -9.3716 -3.5543 32 1 -0.4423 -9.9568 -5.6746 33 1 -2.8367 -7.5122 -3.5262 34 1 -1.7892 -6.5159 -4.5845 35 1 1.5349 -5.7608 0.0692 36 1 2.6929 -3.6962 0.7243 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398997269.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:34 Heat of formation + Delta-G solvation = -42.476090 kcal Electronic energy + Delta-G solvation = -18293.984469 eV Core-core repulsion = 15355.091985 eV Total energy + Delta-G solvation = -2938.892483 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.30408 -39.51532 -38.02093 -36.19047 -35.07273 -32.33787 -31.10480 -30.36800 -28.58779 -27.25512 -24.62850 -22.84143 -22.13412 -21.67933 -21.45509 -19.17454 -18.47424 -17.44863 -17.16103 -16.56603 -16.00670 -15.75794 -15.56842 -15.28511 -14.92654 -14.71848 -14.22316 -14.10953 -13.75211 -13.73995 -13.56808 -13.09206 -12.91499 -12.64841 -12.44881 -12.31184 -12.22652 -11.99074 -11.33714 -11.22041 -11.13761 -10.97181 -10.09985 -9.38743 -9.23762 -9.10998 -8.61339 -6.29657 0.98128 1.22340 1.39212 1.50618 1.51039 1.54188 2.22264 2.41387 2.72070 3.18524 3.51176 3.66571 3.85787 4.08715 4.14367 4.39256 4.43311 4.61317 4.66351 4.68559 4.76630 4.90551 4.93724 5.01680 5.11742 5.20220 5.44195 5.53463 5.76914 5.81751 5.94832 6.01962 6.15690 6.19439 6.28973 6.45709 6.50395 6.76489 6.99183 7.09902 7.21247 8.35483 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.042866 B = 0.003478 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.040649 B = 8048.642221 C = 8317.565596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.036 3.964 3 Si 0.979 3.021 4 H -0.259 1.259 5 H -0.265 1.265 6 H -0.267 1.267 7 C -0.504 4.504 8 H 0.072 0.928 9 C 0.078 3.922 10 C -0.192 4.192 11 C -0.098 4.098 12 C -0.199 4.199 13 C 0.131 3.869 14 N -0.671 5.671 15 C 0.083 3.917 16 H 0.111 0.889 17 C 0.111 3.889 18 N -0.718 5.718 19 C 0.516 3.484 20 O -0.592 6.592 21 C -0.185 4.185 22 C -0.070 4.070 23 C -0.246 4.246 24 H 0.286 0.714 25 H 0.096 0.904 26 H 0.105 0.895 27 H 0.034 0.966 28 H 0.081 0.919 29 H 0.345 0.655 30 H 0.083 0.917 31 H 0.107 0.893 32 H 0.418 0.582 33 H 0.104 0.896 34 H 0.107 0.893 35 H 0.118 0.882 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.256 -12.087 -5.065 13.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.179 4.179 3 Si 0.800 3.200 4 H -0.183 1.183 5 H -0.190 1.190 6 H -0.191 1.191 7 C -0.534 4.534 8 H 0.090 0.910 9 C 0.076 3.924 10 C -0.212 4.212 11 C -0.117 4.117 12 C -0.201 4.201 13 C 0.003 3.997 14 N -0.302 5.302 15 C -0.029 4.029 16 H 0.129 0.871 17 C -0.013 4.013 18 N -0.372 5.372 19 C 0.303 3.697 20 O -0.473 6.473 21 C -0.227 4.227 22 C -0.089 4.089 23 C -0.266 4.266 24 H 0.097 0.903 25 H 0.114 0.886 26 H 0.123 0.877 27 H 0.052 0.948 28 H 0.099 0.901 29 H 0.164 0.836 30 H 0.101 0.899 31 H 0.125 0.875 32 H 0.257 0.743 33 H 0.122 0.878 34 H 0.125 0.875 35 H 0.136 0.864 36 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.095 -12.322 -5.002 13.299 hybrid contribution -0.474 1.142 -0.471 1.323 sum -0.379 -11.180 -5.473 12.454 Atomic orbital electron populations 1.69882 1.08923 1.30303 1.36173 1.26708 0.95465 1.04386 0.91321 0.85210 0.79459 0.76451 0.78884 1.18272 1.18953 1.19136 1.19861 0.98279 0.92793 1.42422 0.91024 1.17965 0.92010 0.93043 0.89357 1.21251 1.00273 0.97184 1.02499 1.20804 0.98649 0.92695 0.99507 1.19340 1.00664 0.93675 1.06389 1.20515 0.94430 0.93015 0.91728 1.60500 1.56757 1.06280 1.06647 1.22563 0.90344 0.92843 0.97105 0.87065 1.22212 0.91939 0.97796 0.89391 1.46263 1.13921 1.35792 1.41241 1.21170 0.81966 0.83490 0.83043 1.90721 1.40663 1.69688 1.46209 1.23197 1.03214 0.98530 0.97796 1.20681 0.94796 0.96579 0.96820 1.21186 1.04361 0.93433 1.07573 0.90298 0.88630 0.87722 0.94753 0.90090 0.83563 0.89853 0.87489 0.74252 0.87764 0.87506 0.86431 0.88981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.23 10.95 21.83 0.24 -43.00 16 2 C 0.04 1.80 5.14 85.26 0.44 2.24 16 3 Si 0.98 38.28 29.59 68.60 2.03 40.31 16 4 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 5 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 6 H -0.27 -9.97 7.11 99.48 0.71 -9.27 16 7 C -0.50 -27.29 9.05 23.46 0.21 -27.07 16 8 H 0.07 3.78 7.91 -2.91 -0.02 3.75 16 9 C 0.08 4.19 5.57 -21.29 -0.12 4.07 16 10 C -0.19 -9.87 8.70 22.73 0.20 -9.67 16 11 C -0.10 -4.18 9.67 22.22 0.21 -3.97 16 12 C -0.20 -7.48 5.42 -19.67 -0.11 -7.58 16 13 C 0.13 3.49 5.68 85.56 0.49 3.98 16 14 N -0.67 -14.77 6.33 -490.13 -3.10 -17.87 16 15 C 0.08 1.35 3.45 45.97 0.16 1.51 16 16 H 0.11 1.61 7.87 -2.39 -0.02 1.59 16 17 C 0.11 1.47 7.52 86.83 0.65 2.12 16 18 N -0.72 -11.36 6.24 -459.75 -2.87 -14.23 16 19 C 0.52 11.84 8.43 87.92 0.74 12.58 16 20 O -0.59 -19.16 18.03 -3.05 -0.06 -19.21 16 21 C -0.19 -3.45 6.55 30.61 0.20 -3.25 16 22 C -0.07 -2.84 9.67 22.22 0.21 -2.63 16 23 C -0.25 -11.77 9.80 22.73 0.22 -11.55 16 24 H 0.29 13.52 8.30 -92.71 -0.77 12.75 16 25 H 0.10 5.21 6.15 -2.91 -0.02 5.19 16 26 H 0.10 3.94 8.06 -2.91 -0.02 3.92 16 27 H 0.03 0.87 8.08 -2.39 -0.02 0.85 16 28 H 0.08 1.96 8.02 -2.39 -0.02 1.95 16 29 H 0.34 7.96 8.14 -89.69 -0.73 7.23 16 30 H 0.08 1.15 8.07 -2.39 -0.02 1.13 16 31 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.42 5.25 8.96 -92.70 -0.83 4.42 16 33 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.11 2.00 7.61 -2.39 -0.02 1.98 16 35 H 0.12 4.03 8.06 -2.91 -0.02 4.00 16 36 H 0.09 4.23 8.06 -2.91 -0.02 4.21 16 Total: -1.00 -64.43 306.69 -0.70 -65.12 By element: Atomic # 1 Polarization: 28.55 SS G_CDS: -0.45 Total: 28.09 kcal Atomic # 6 Polarization: -42.73 SS G_CDS: 3.51 Total: -39.22 kcal Atomic # 7 Polarization: -69.36 SS G_CDS: -5.73 Total: -75.09 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: -0.06 Total: -19.21 kcal Atomic # 14 Polarization: 38.28 SS G_CDS: 2.03 Total: 40.31 kcal Total: -64.43 -0.70 -65.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398997269.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.646 kcal (2) G-P(sol) polarization free energy of solvation -64.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds