Wall clock time and date at job start Mon Mar 30 2020 05:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86791 * 120.00245 * 2 1 4 4 H 1.48500 * 109.47289 * 239.99832 * 3 2 1 5 5 H 1.48503 * 109.47162 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.47074 * 119.99938 * 3 2 1 7 7 C 1.37885 * 119.99532 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99464 * 169.32810 * 7 2 1 9 9 C 1.50702 * 119.99986 * 349.33198 * 7 2 1 10 10 C 1.52995 * 115.55301 * 325.12146 * 9 7 2 11 11 N 1.46503 * 109.47048 * 306.46784 * 10 9 7 12 12 C 1.34770 * 120.00209 * 183.71696 * 11 10 9 13 13 O 1.21598 * 119.99953 * 5.68469 * 12 11 10 14 14 C 1.47518 * 120.00187 * 185.68387 * 12 11 10 15 15 C 1.39799 * 120.07262 * 174.89090 * 14 12 11 16 16 C 1.37604 * 119.93214 * 179.73470 * 15 14 12 17 17 C 1.39221 * 120.07000 * 0.24494 * 16 15 14 18 18 N 1.39041 * 119.92868 * 180.02562 * 17 16 15 19 19 C 1.39219 * 120.13575 * 0.02562 * 17 16 15 20 20 C 1.37603 * 120.07123 * 359.96922 * 19 17 16 21 21 C 1.53001 * 117.49564 * 110.78637 * 9 7 2 22 22 C 1.52999 * 117.49507 * 179.44508 * 9 7 2 23 23 H 0.97006 * 119.99497 * 5.02934 * 1 2 3 24 24 H 1.08996 * 109.47276 * 186.46544 * 10 9 7 25 25 H 1.08997 * 109.47208 * 66.46173 * 10 9 7 26 26 H 0.97001 * 120.00015 * 3.70576 * 11 10 9 27 27 H 1.08000 * 120.03365 * 0.02562 * 15 14 12 28 28 H 1.08002 * 119.96456 * 180.27608 * 16 15 14 29 29 H 0.97005 * 120.00408 * 359.97438 * 18 17 16 30 30 H 0.97001 * 119.99892 * 180.02562 * 18 17 16 31 31 H 1.07999 * 119.95944 * 180.02562 * 19 17 16 32 32 H 1.07999 * 120.03282 * 180.02562 * 20 19 17 33 33 H 1.08996 * 117.50260 * 214.99836 * 21 9 7 34 34 H 1.09003 * 117.49936 * 0.03101 * 21 9 7 35 35 H 1.08994 * 117.49822 * 359.97438 * 22 9 7 36 36 H 1.08995 * 117.49490 * 144.97638 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6962 1.2126 7 6 2.0045 -1.1942 0.0005 8 1 3.0705 -1.2023 -0.1727 9 6 1.2704 -2.4878 0.2427 10 6 0.1034 -2.4098 1.2290 11 7 0.5661 -1.8193 2.4873 12 6 -0.2760 -1.7196 3.5348 13 8 -1.3862 -2.2117 3.4713 14 6 0.1489 -1.0134 4.7583 15 6 -0.7578 -0.8158 5.8038 16 6 -0.3568 -0.1615 6.9460 17 6 0.9490 0.3080 7.0590 18 7 1.3512 0.9682 8.2147 19 6 1.8528 0.1177 6.0173 20 6 1.4579 -0.5359 4.8726 21 6 1.1364 -3.4552 -0.9351 22 6 2.0893 -3.7800 0.2180 23 1 -0.4850 0.8369 -0.0737 24 1 -0.2807 -3.4122 1.4175 25 1 -0.6883 -1.7908 0.8068 26 1 1.4788 -1.5003 2.5667 27 1 -1.7707 -1.1804 5.7170 28 1 -1.0556 -0.0125 7.7558 29 1 0.7222 1.1016 8.9410 30 1 2.2606 1.2961 8.2944 31 1 2.8651 0.4827 6.1082 32 1 2.1596 -0.6835 4.0650 33 1 0.2169 -4.0360 -1.0073 34 1 1.5796 -3.1561 -1.8850 35 1 3.1588 -3.6944 0.0262 36 1 1.7969 -4.5743 0.9047 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404162067.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:16:49 Heat of formation + Delta-G solvation = -9.266278 kcal Electronic energy + Delta-G solvation = -19093.667850 eV Core-core repulsion = 16156.215452 eV Total energy + Delta-G solvation = -2937.452398 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.98457 -39.54754 -38.35601 -35.42515 -34.75968 -34.11342 -31.85090 -30.12524 -27.80603 -27.02471 -23.91622 -23.52809 -22.93472 -21.18200 -21.01759 -19.07015 -18.07885 -17.83934 -17.45515 -16.72033 -16.50553 -15.96103 -15.71217 -15.21564 -14.83592 -14.73318 -14.41621 -14.10784 -14.06029 -13.57316 -13.38885 -13.29295 -12.82386 -12.66373 -12.30231 -12.04636 -11.91833 -11.53677 -11.44077 -11.06519 -10.76362 -10.61811 -10.10103 -9.95410 -9.66790 -8.46325 -8.00344 -6.17397 0.17141 0.51334 1.44434 1.46877 1.53863 2.09905 2.42565 2.58987 2.97168 3.05432 3.10118 3.66009 3.91114 4.06734 4.11444 4.27277 4.44500 4.53803 4.59784 4.74734 4.78011 4.81860 4.96771 5.09411 5.13097 5.28007 5.29258 5.41651 5.52935 5.59167 5.61283 5.81461 5.89306 5.93304 6.39205 6.53686 6.79402 6.98859 6.99360 7.45707 7.52841 8.93864 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.019071 B = 0.006545 C = 0.005548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.809386 B = 4277.123484 C = 5045.826959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.037 3.963 3 Si 0.944 3.056 4 H -0.274 1.274 5 H -0.294 1.294 6 H -0.258 1.258 7 C -0.508 4.508 8 H 0.062 0.938 9 C 0.009 3.991 10 C 0.174 3.826 11 N -0.684 5.684 12 C 0.544 3.456 13 O -0.611 6.611 14 C -0.218 4.218 15 C -0.026 4.026 16 C -0.209 4.209 17 C 0.246 3.754 18 N -0.852 5.852 19 C -0.209 4.209 20 C -0.040 4.040 21 C -0.198 4.198 22 C -0.185 4.185 23 H 0.258 0.742 24 H 0.020 0.980 25 H 0.072 0.928 26 H 0.403 0.597 27 H 0.121 0.879 28 H 0.152 0.848 29 H 0.411 0.589 30 H 0.411 0.589 31 H 0.151 0.849 32 H 0.127 0.873 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.401 2.999 15.650 16.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.165 4.165 3 Si 0.770 3.230 4 H -0.200 1.200 5 H -0.221 1.221 6 H -0.183 1.183 7 C -0.545 4.545 8 H 0.080 0.920 9 C 0.009 3.991 10 C 0.050 3.950 11 N -0.331 5.331 12 C 0.334 3.666 13 O -0.496 6.496 14 C -0.223 4.223 15 C -0.045 4.045 16 C -0.232 4.232 17 C 0.137 3.863 18 N -0.390 5.390 19 C -0.232 4.232 20 C -0.060 4.060 21 C -0.237 4.237 22 C -0.223 4.223 23 H 0.068 0.932 24 H 0.038 0.962 25 H 0.090 0.910 26 H 0.240 0.760 27 H 0.139 0.861 28 H 0.169 0.831 29 H 0.242 0.758 30 H 0.241 0.759 31 H 0.169 0.831 32 H 0.145 0.855 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.105 0.895 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 4.493 2.799 15.624 16.496 hybrid contribution 0.488 0.929 -0.433 1.135 sum 4.980 3.729 15.191 16.415 Atomic orbital electron populations 1.70024 1.07281 1.27168 1.48574 1.25598 0.95198 1.01775 0.93924 0.85821 0.78502 0.79338 0.79347 1.19976 1.22054 1.18273 1.20639 0.93997 0.89722 1.50166 0.92000 1.19247 0.95055 0.89797 0.95025 1.20667 0.97568 0.94209 0.82587 1.45613 1.15033 1.60656 1.11772 1.18745 0.84220 0.79433 0.84179 1.90628 1.23117 1.51734 1.84163 1.19704 0.96889 1.09653 0.96065 1.21004 0.98560 0.93534 0.91449 1.20706 0.95936 1.06782 0.99752 1.17990 0.92337 0.88676 0.87345 1.42372 1.17091 1.63183 1.16369 1.20736 1.01081 1.07593 0.93783 1.21199 0.93913 0.93277 0.97572 1.22930 1.00256 1.06266 0.94215 1.22950 0.97009 1.00425 1.01874 0.93207 0.96160 0.91025 0.76005 0.86147 0.83061 0.75848 0.75853 0.83117 0.85529 0.90886 0.90411 0.89458 0.89996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -49.76 10.75 21.45 0.23 -49.53 16 2 C 0.04 1.92 5.12 84.66 0.43 2.35 16 3 Si 0.94 40.94 29.55 68.60 2.03 42.97 16 4 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 5 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 6 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 7 C -0.51 -25.84 8.27 25.60 0.21 -25.63 16 8 H 0.06 3.08 7.84 -2.91 -0.02 3.06 16 9 C 0.01 0.45 2.00 -52.93 -0.11 0.35 16 10 C 0.17 8.77 4.75 86.38 0.41 9.18 16 11 N -0.68 -31.56 5.22 -466.30 -2.44 -33.99 16 12 C 0.54 25.17 7.75 86.69 0.67 25.84 16 13 O -0.61 -32.34 16.34 -4.03 -0.07 -32.41 16 14 C -0.22 -8.11 5.88 -20.07 -0.12 -8.22 16 15 C -0.03 -0.83 9.58 22.50 0.22 -0.61 16 16 C -0.21 -4.96 9.87 22.36 0.22 -4.74 16 17 C 0.25 5.12 6.75 38.47 0.26 5.38 16 18 N -0.85 -9.92 9.05 -51.38 -0.47 -10.38 16 19 C -0.21 -4.96 9.87 22.36 0.22 -4.74 16 20 C -0.04 -1.24 9.53 22.50 0.21 -1.03 16 21 C -0.20 -8.80 9.96 30.62 0.30 -8.49 16 22 C -0.19 -7.63 9.92 30.62 0.30 -7.33 16 23 H 0.26 14.13 8.32 -92.70 -0.77 13.36 16 24 H 0.02 1.02 8.06 -2.39 -0.02 1.00 16 25 H 0.07 4.16 6.04 -2.39 -0.01 4.15 16 26 H 0.40 17.40 5.96 -92.71 -0.55 16.85 16 27 H 0.12 4.07 7.65 -2.91 -0.02 4.04 16 28 H 0.15 2.61 8.06 -2.91 -0.02 2.58 16 29 H 0.41 3.06 8.83 -92.70 -0.82 2.24 16 30 H 0.41 3.16 8.83 -92.71 -0.82 2.34 16 31 H 0.15 2.66 8.06 -2.91 -0.02 2.64 16 32 H 0.13 3.87 6.41 -2.91 -0.02 3.85 16 33 H 0.07 3.11 8.14 -2.39 -0.02 3.09 16 34 H 0.08 3.44 8.14 -2.39 -0.02 3.42 16 35 H 0.09 3.38 8.14 -2.39 -0.02 3.36 16 36 H 0.08 3.14 8.14 -2.39 -0.02 3.12 16 Total: -1.00 -66.53 308.11 1.47 -65.06 By element: Atomic # 1 Polarization: 37.04 SS G_CDS: -1.06 Total: 35.98 kcal Atomic # 6 Polarization: -20.94 SS G_CDS: 3.24 Total: -17.70 kcal Atomic # 7 Polarization: -91.23 SS G_CDS: -2.67 Total: -93.90 kcal Atomic # 8 Polarization: -32.34 SS G_CDS: -0.07 Total: -32.41 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 2.03 Total: 42.97 kcal Total: -66.53 1.47 -65.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404162067.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.791 kcal (2) G-P(sol) polarization free energy of solvation -66.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds