Wall clock time and date at job start Mon Mar 30 2020 04:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38627 * 120.36523 * 2 1 4 4 C 1.39698 * 118.41961 * 179.97438 * 3 2 1 5 5 C 1.43197 * 120.51718 * 180.02562 * 4 3 2 6 6 N 4.80316 * 136.34983 * 0.02562 * 2 1 3 7 7 N 1.33193 * 118.96483 * 0.02562 * 4 3 2 8 8 C 1.32279 * 120.62287 * 359.97438 * 7 4 3 9 9 N 1.38430 * 119.13367 * 180.02562 * 8 7 4 10 10 C 1.47476 * 110.99594 * 264.02917 * 9 8 7 11 11 C 1.53505 * 87.93277 * 138.70364 * 10 9 8 12 12 O 1.42909 * 114.34623 * 87.63337 * 11 10 9 13 13 C 1.50702 * 114.17158 * 220.32661 * 11 10 9 14 14 H 1.07999 * 119.99942 * 99.31427 * 13 11 10 15 15 C 1.37880 * 119.99731 * 279.31446 * 13 11 10 16 16 N 1.31515 * 120.00304 * 10.18732 * 15 13 11 17 17 Si 1.86796 * 119.99701 * 190.17995 * 15 13 11 18 18 H 1.48506 * 109.47146 * 85.00202 * 17 15 13 19 19 H 1.48507 * 109.47285 * 205.00030 * 17 15 13 20 20 H 1.48497 * 109.47314 * 324.99838 * 17 15 13 21 21 C 1.47480 * 111.00018 * 359.97438 * 9 8 7 22 22 N 1.32209 * 120.36580 * 179.97438 * 2 1 3 23 23 H 1.08997 * 109.47512 * 89.99541 * 1 2 3 24 24 H 1.09000 * 109.47288 * 209.99957 * 1 2 3 25 25 H 1.09004 * 109.47168 * 329.99865 * 1 2 3 26 26 H 1.07996 * 120.79133 * 0.25531 * 3 2 1 27 27 H 1.09004 * 113.47600 * 253.47013 * 10 9 8 28 28 H 1.09001 * 113.48323 * 23.93244 * 10 9 8 29 29 H 0.96697 * 114.00047 * 90.07508 * 12 11 10 30 30 H 0.96995 * 119.99887 * 179.97438 * 16 15 13 31 31 H 1.09000 * 113.47300 * 336.06542 * 21 9 8 32 32 H 1.09003 * 113.47254 * 106.52929 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2077 1.1961 0.0000 4 6 3.6039 1.1487 0.0005 5 6 4.3725 2.3569 0.0011 6 7 4.9824 3.3154 0.0015 7 7 4.2090 -0.0379 0.0005 8 6 3.5010 -1.1553 0.0005 9 7 4.1617 -2.3717 0.0010 10 6 4.2886 -2.9047 -1.3682 11 6 5.7198 -3.3291 -1.0107 12 8 5.8190 -4.6249 -0.4163 13 6 6.7242 -3.1007 -2.1108 14 1 7.3619 -2.2294 -2.0874 15 6 6.8288 -4.0040 -3.1472 16 7 5.9274 -4.9515 -3.2873 17 14 8.2507 -3.8821 -4.3525 18 1 9.4302 -4.5955 -3.8002 19 1 7.8587 -4.5001 -5.6447 20 1 8.5935 -2.4538 -4.5707 21 6 5.6239 -2.1790 0.0009 22 7 2.1753 -1.1407 0.0005 23 1 -0.3634 0.0001 -1.0276 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3634 0.8900 0.5139 26 1 1.6867 2.1421 0.0041 27 1 3.6242 -3.7449 -1.5704 28 1 4.2434 -2.1359 -2.1395 29 1 5.9407 -5.3418 -1.0538 30 1 6.0009 -5.5867 -4.0166 31 1 5.9349 -1.2165 -0.4051 32 1 6.0915 -2.4039 0.9595 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408103724.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:49 Heat of formation + Delta-G solvation = 90.290023 kcal Electronic energy + Delta-G solvation = -18786.416746 eV Core-core repulsion = 15749.741089 eV Total energy + Delta-G solvation = -3036.675656 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.101 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.47167 -39.17507 -36.87132 -34.90851 -34.18510 -32.29631 -32.19638 -28.89592 -27.86709 -25.47205 -25.10888 -24.57433 -21.88949 -19.18666 -18.87828 -17.69272 -17.39504 -15.78616 -15.63376 -15.61620 -15.12554 -14.45135 -13.93708 -13.81658 -13.77580 -13.44458 -13.12764 -13.02120 -12.65881 -12.44652 -12.28004 -11.75542 -11.74266 -11.04037 -10.95352 -10.88818 -10.54476 -10.48166 -10.25035 -9.82164 -9.37345 -9.19791 -8.85653 -8.47194 -8.09102 -6.35608 -4.44105 0.41662 0.89278 2.27801 2.76771 3.18093 3.20646 3.25656 3.28484 3.63305 3.76704 4.21501 4.25544 4.66490 4.81242 4.88255 5.04372 5.07132 5.36437 5.46914 5.56462 5.76403 5.90269 5.97497 6.20295 6.22463 6.57776 6.68066 6.87983 6.89475 7.14129 7.20512 7.64760 7.66694 7.84765 8.17235 8.59052 9.25855 9.32766 10.70564 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.022201 B = 0.005884 C = 0.005198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.896734 B = 4757.424141 C = 5385.290268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.201 3.799 3 C -0.217 4.217 4 C 0.264 3.736 5 C 0.271 3.729 6 N -0.379 5.379 7 N -0.521 5.521 8 C 0.493 3.507 9 N -0.415 5.415 10 C 0.015 3.985 11 C 0.249 3.751 12 O -0.562 6.562 13 C -0.540 4.540 14 H 0.071 0.929 15 C 0.073 3.927 16 N -0.888 5.888 17 Si 0.901 3.099 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.272 1.272 21 C 0.018 3.982 22 N -0.499 5.499 23 H 0.089 0.911 24 H 0.087 0.913 25 H 0.082 0.918 26 H 0.154 0.846 27 H 0.086 0.914 28 H 0.067 0.933 29 H 0.385 0.615 30 H 0.271 0.729 31 H 0.102 0.898 32 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.736 8.481 3.635 13.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.050 3.950 3 C -0.243 4.243 4 C 0.115 3.885 5 C -0.047 4.047 6 N -0.056 5.056 7 N -0.242 5.242 8 C 0.139 3.861 9 N -0.136 5.136 10 C -0.111 4.111 11 C 0.207 3.793 12 O -0.370 6.370 13 C -0.578 4.578 14 H 0.089 0.911 15 C -0.131 4.131 16 N -0.526 5.526 17 Si 0.728 3.272 18 H -0.200 1.200 19 H -0.211 1.211 20 H -0.197 1.197 21 C -0.110 4.110 22 N -0.217 5.217 23 H 0.107 0.893 24 H 0.106 0.894 25 H 0.101 0.899 26 H 0.171 0.829 27 H 0.104 0.896 28 H 0.085 0.915 29 H 0.236 0.764 30 H 0.081 0.919 31 H 0.120 0.880 32 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.769 8.799 4.596 13.245 hybrid contribution 0.368 0.654 -1.664 1.825 sum -8.401 9.453 2.932 12.982 Atomic orbital electron populations 1.20806 0.87058 1.04323 1.04047 1.21693 0.97763 0.87006 0.88517 1.22438 0.93394 1.01285 1.07203 1.16465 0.89098 0.87304 0.95680 1.24865 0.93076 0.92167 0.94633 1.81238 1.06735 1.11336 1.06248 1.68480 1.41180 0.97667 1.16869 1.22281 0.86573 0.90043 0.87224 1.66222 1.10075 1.11298 1.26031 1.24773 1.03260 0.98961 0.84119 1.19374 0.89580 0.81424 0.88911 1.86102 1.95267 1.17083 1.38509 1.21424 1.20441 1.09634 1.06351 0.91081 1.25081 0.95839 0.94934 0.97210 1.69777 1.32808 1.17475 1.32493 0.86455 0.82325 0.78657 0.79754 1.20039 1.21051 1.19709 1.24254 0.84220 1.00832 1.01674 1.68004 1.08555 1.30003 1.15150 0.89269 0.89449 0.89887 0.82859 0.89583 0.91476 0.76406 0.91907 0.88038 0.90215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.82 10.21 36.00 0.37 -0.45 16 2 C 0.20 2.49 6.82 -82.29 -0.56 1.93 16 3 C -0.22 -2.43 9.57 -38.89 -0.37 -2.80 16 4 C 0.26 3.80 6.61 -84.81 -0.56 3.24 16 5 C 0.27 3.84 15.60 -22.47 -0.35 3.49 16 6 N -0.38 -5.76 18.54 41.84 0.78 -4.98 16 7 N -0.52 -9.34 8.14 -11.90 -0.10 -9.44 16 8 C 0.49 9.47 6.78 -322.94 -2.19 7.28 16 9 N -0.42 -8.99 6.51 -185.10 -1.21 -10.19 16 10 C 0.02 0.35 7.08 -7.61 -0.05 0.29 16 11 C 0.25 6.11 1.40 -91.27 -0.13 5.98 16 12 O -0.56 -14.31 13.57 -35.23 -0.48 -14.78 16 13 C -0.54 -13.94 8.64 -34.44 -0.30 -14.24 16 14 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 15 C 0.07 1.86 5.21 -17.82 -0.09 1.77 16 16 N -0.89 -22.88 11.82 55.43 0.66 -22.22 16 17 Si 0.90 19.87 29.55 -169.99 -5.02 14.85 16 18 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 19 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 20 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 21 C 0.02 0.40 6.78 -7.63 -0.05 0.35 16 22 N -0.50 -8.50 10.39 -10.19 -0.11 -8.61 16 23 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.08 0.41 8.09 -51.93 -0.42 -0.01 16 26 H 0.15 1.10 8.06 -52.49 -0.42 0.67 16 27 H 0.09 2.06 8.14 -51.93 -0.42 1.63 16 28 H 0.07 1.56 7.85 -51.93 -0.41 1.16 16 29 H 0.39 9.80 7.10 45.56 0.32 10.12 16 30 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 31 H 0.10 2.20 6.58 -51.93 -0.34 1.86 16 32 H 0.08 1.71 8.14 -51.93 -0.42 1.29 16 LS Contribution 290.91 15.07 4.38 4.38 Total: -1.00 -28.45 290.91 -7.89 -36.34 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -2.51 Total: 7.83 kcal Atomic # 6 Polarization: 11.13 SS G_CDS: -4.29 Total: 6.84 kcal Atomic # 7 Polarization: -55.47 SS G_CDS: 0.02 Total: -55.45 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: -0.48 Total: -14.78 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.85 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -28.45 -7.89 -36.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408103724.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.628 kcal (2) G-P(sol) polarization free energy of solvation -28.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds