Wall clock time and date at job start Mon Mar 30 2020 04:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38627 * 120.36523 * 2 1 4 4 C 1.39698 * 118.41961 * 179.97438 * 3 2 1 5 5 C 1.43197 * 120.51718 * 180.02562 * 4 3 2 6 6 N 4.80316 * 136.34983 * 0.02562 * 2 1 3 7 7 N 1.33193 * 118.96483 * 0.02562 * 4 3 2 8 8 C 1.32279 * 120.62287 * 359.97438 * 7 4 3 9 9 N 1.38430 * 119.13367 * 180.02562 * 8 7 4 10 10 C 1.47476 * 110.99594 * 264.02917 * 9 8 7 11 11 C 1.53505 * 87.93277 * 138.70364 * 10 9 8 12 12 O 1.42909 * 114.34623 * 87.63337 * 11 10 9 13 13 C 1.50702 * 114.17158 * 220.32661 * 11 10 9 14 14 H 1.07999 * 119.99942 * 99.31427 * 13 11 10 15 15 C 1.37880 * 119.99731 * 279.31446 * 13 11 10 16 16 N 1.31515 * 120.00304 * 10.18732 * 15 13 11 17 17 Si 1.86796 * 119.99701 * 190.17995 * 15 13 11 18 18 H 1.48506 * 109.47146 * 85.00202 * 17 15 13 19 19 H 1.48507 * 109.47285 * 205.00030 * 17 15 13 20 20 H 1.48497 * 109.47314 * 324.99838 * 17 15 13 21 21 C 1.47480 * 111.00018 * 359.97438 * 9 8 7 22 22 N 1.32209 * 120.36580 * 179.97438 * 2 1 3 23 23 H 1.08997 * 109.47512 * 89.99541 * 1 2 3 24 24 H 1.09000 * 109.47288 * 209.99957 * 1 2 3 25 25 H 1.09004 * 109.47168 * 329.99865 * 1 2 3 26 26 H 1.07996 * 120.79133 * 0.25531 * 3 2 1 27 27 H 1.09004 * 113.47600 * 253.47013 * 10 9 8 28 28 H 1.09001 * 113.48323 * 23.93244 * 10 9 8 29 29 H 0.96697 * 114.00047 * 90.07508 * 12 11 10 30 30 H 0.96995 * 119.99887 * 179.97438 * 16 15 13 31 31 H 1.09000 * 113.47300 * 336.06542 * 21 9 8 32 32 H 1.09003 * 113.47254 * 106.52929 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2077 1.1961 0.0000 4 6 3.6039 1.1487 0.0005 5 6 4.3725 2.3569 0.0011 6 7 4.9824 3.3154 0.0015 7 7 4.2090 -0.0379 0.0005 8 6 3.5010 -1.1553 0.0005 9 7 4.1617 -2.3717 0.0010 10 6 4.2886 -2.9047 -1.3682 11 6 5.7198 -3.3291 -1.0107 12 8 5.8190 -4.6249 -0.4163 13 6 6.7242 -3.1007 -2.1108 14 1 7.3619 -2.2294 -2.0874 15 6 6.8288 -4.0040 -3.1472 16 7 5.9274 -4.9515 -3.2873 17 14 8.2507 -3.8821 -4.3525 18 1 9.4302 -4.5955 -3.8002 19 1 7.8587 -4.5001 -5.6447 20 1 8.5935 -2.4538 -4.5707 21 6 5.6239 -2.1790 0.0009 22 7 2.1753 -1.1407 0.0005 23 1 -0.3634 0.0001 -1.0276 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3634 0.8900 0.5139 26 1 1.6867 2.1421 0.0041 27 1 3.6242 -3.7449 -1.5704 28 1 4.2434 -2.1359 -2.1395 29 1 5.9407 -5.3418 -1.0538 30 1 6.0009 -5.5867 -4.0166 31 1 5.9349 -1.2165 -0.4051 32 1 6.0915 -2.4039 0.9595 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408103724.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:48 Heat of formation + Delta-G solvation = 69.522225 kcal Electronic energy + Delta-G solvation = -18787.317305 eV Core-core repulsion = 15749.741089 eV Total energy + Delta-G solvation = -3037.576216 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.101 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.79428 -40.75019 -38.04444 -36.58564 -35.44721 -34.23072 -33.51965 -29.91990 -29.49164 -26.98149 -26.86959 -25.90573 -23.24044 -20.72578 -20.41317 -19.33372 -18.76409 -17.39795 -17.18829 -16.85002 -16.64946 -16.17359 -15.55882 -14.95836 -14.87425 -14.74026 -14.40116 -14.16522 -14.09887 -13.92518 -13.62392 -13.30903 -13.08848 -12.77647 -12.70566 -12.29364 -12.23965 -12.08100 -11.68270 -11.34969 -10.92708 -10.79509 -10.49164 -10.24593 -9.75856 -8.28876 -6.44614 -0.71509 -0.24660 1.12087 1.42830 1.46105 1.54198 1.60960 2.06817 2.31059 2.41787 2.59180 2.91861 3.16042 3.42347 3.69074 3.86680 3.94666 4.07942 4.20762 4.33665 4.46176 4.73342 4.81405 4.84538 4.95822 4.96355 5.03373 5.29496 5.36967 5.66056 5.68686 5.90296 6.01149 6.13374 6.59892 6.91488 7.27835 7.32589 8.76882 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.022201 B = 0.005884 C = 0.005198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.896734 B = 4757.424141 C = 5385.290268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.197 3.803 3 C -0.175 4.175 4 C 0.244 3.756 5 C 0.287 3.713 6 N -0.398 5.398 7 N -0.547 5.547 8 C 0.468 3.532 9 N -0.424 5.424 10 C 0.031 3.969 11 C 0.230 3.770 12 O -0.569 6.569 13 C -0.563 4.563 14 H 0.065 0.935 15 C 0.036 3.964 16 N -0.906 5.906 17 Si 0.962 3.038 18 H -0.271 1.271 19 H -0.279 1.279 20 H -0.273 1.273 21 C 0.031 3.969 22 N -0.522 5.522 23 H 0.106 0.894 24 H 0.082 0.918 25 H 0.123 0.877 26 H 0.207 0.793 27 H 0.069 0.931 28 H 0.057 0.943 29 H 0.381 0.619 30 H 0.275 0.725 31 H 0.101 0.899 32 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.340 10.385 3.491 15.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.048 3.952 3 C -0.200 4.200 4 C 0.097 3.903 5 C -0.031 4.031 6 N -0.075 5.075 7 N -0.268 5.268 8 C 0.112 3.888 9 N -0.145 5.145 10 C -0.097 4.097 11 C 0.188 3.812 12 O -0.377 6.377 13 C -0.600 4.600 14 H 0.083 0.917 15 C -0.166 4.166 16 N -0.544 5.544 17 Si 0.787 3.213 18 H -0.197 1.197 19 H -0.205 1.205 20 H -0.198 1.198 21 C -0.097 4.097 22 N -0.240 5.240 23 H 0.124 0.876 24 H 0.100 0.900 25 H 0.141 0.859 26 H 0.224 0.776 27 H 0.087 0.913 28 H 0.075 0.925 29 H 0.231 0.769 30 H 0.084 0.916 31 H 0.119 0.881 32 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.391 10.751 4.470 15.606 hybrid contribution 0.709 0.184 -1.584 1.745 sum -9.682 10.936 2.886 14.888 Atomic orbital electron populations 1.21025 0.83228 1.06074 1.05545 1.22618 0.99888 0.86040 0.86699 1.23008 0.91805 1.03086 1.02145 1.16680 0.90591 0.86120 0.96901 1.24736 0.92630 0.91776 0.93926 1.81262 1.06955 1.12124 1.07112 1.68258 1.42237 0.98558 1.17792 1.21895 0.87399 0.89411 0.90085 1.66077 1.09651 1.13735 1.25022 1.24356 1.01926 0.98131 0.85243 1.19601 0.90327 0.81482 0.89781 1.86085 1.95426 1.17543 1.38670 1.21607 1.21188 1.09965 1.07279 0.91684 1.25739 0.97759 0.94577 0.98565 1.69849 1.33745 1.17799 1.33010 0.85511 0.79501 0.78432 0.77841 1.19674 1.20467 1.19756 1.24031 0.85191 0.99685 1.00805 1.67998 1.07636 1.32647 1.15712 0.87591 0.89960 0.85903 0.77598 0.91253 0.92505 0.76854 0.91602 0.88111 0.90304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.13 10.21 71.23 0.73 -0.40 16 2 C 0.20 4.26 6.82 42.59 0.29 4.55 16 3 C -0.18 -3.21 9.57 22.72 0.22 -3.00 16 4 C 0.24 6.55 6.61 40.54 0.27 6.82 16 5 C 0.29 7.63 15.60 88.33 1.38 9.00 16 6 N -0.40 -11.49 18.54 19.00 0.35 -11.14 16 7 N -0.55 -19.48 8.14 -191.57 -1.56 -21.04 16 8 C 0.47 18.02 6.78 261.53 1.77 19.79 16 9 N -0.42 -18.85 6.51 -739.92 -4.82 -23.66 16 10 C 0.03 1.48 7.08 83.53 0.59 2.07 16 11 C 0.23 11.64 1.40 -11.21 -0.02 11.62 16 12 O -0.57 -30.03 13.57 -148.98 -2.02 -32.05 16 13 C -0.56 -29.73 8.64 25.60 0.22 -29.51 16 14 H 0.06 3.42 7.83 -2.91 -0.02 3.40 16 15 C 0.04 1.83 5.21 84.66 0.44 2.27 16 16 N -0.91 -47.40 11.82 21.45 0.25 -47.15 16 17 Si 0.96 40.94 29.55 68.60 2.03 42.96 16 18 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 19 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 20 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 21 C 0.03 1.42 6.78 83.52 0.57 1.99 16 22 N -0.52 -17.23 10.39 -186.14 -1.93 -19.16 16 23 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 24 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.12 0.44 8.09 -2.38 -0.02 0.42 16 26 H 0.21 1.58 8.06 -2.91 -0.02 1.56 16 27 H 0.07 3.47 8.14 -2.39 -0.02 3.45 16 28 H 0.06 2.76 7.85 -2.39 -0.02 2.74 16 29 H 0.38 20.14 7.10 -74.06 -0.53 19.62 16 30 H 0.27 13.54 8.31 -92.71 -0.77 12.77 16 31 H 0.10 4.53 6.58 -2.39 -0.02 4.51 16 32 H 0.08 3.51 8.14 -2.39 -0.02 3.49 16 Total: -1.00 -63.83 290.91 -0.60 -64.43 By element: Atomic # 1 Polarization: 20.96 SS G_CDS: 0.65 Total: 21.61 kcal Atomic # 6 Polarization: 18.75 SS G_CDS: 6.46 Total: 25.21 kcal Atomic # 7 Polarization: -114.45 SS G_CDS: -7.71 Total: -122.16 kcal Atomic # 8 Polarization: -30.03 SS G_CDS: -2.02 Total: -32.05 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 2.03 Total: 42.96 kcal Total: -63.83 -0.60 -64.43 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408103724.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.949 kcal (2) G-P(sol) polarization free energy of solvation -63.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds