Wall clock time and date at job start Mon Mar 30 2020 05:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00201 * 2 1 4 4 H 1.48503 * 109.47017 * 239.99738 * 3 2 1 5 5 H 1.48498 * 109.47024 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47228 * 120.00138 * 3 2 1 7 7 C 1.37876 * 119.99976 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00209 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99997 * 0.02562 * 7 2 1 10 10 N 1.46494 * 109.47011 * 179.97438 * 9 7 2 11 11 C 1.34784 * 119.99635 * 180.02562 * 10 9 7 12 12 O 1.21579 * 120.00114 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99908 * 179.97438 * 11 10 9 14 14 C 1.46496 * 120.00258 * 179.97438 * 13 11 10 15 15 H 1.09004 * 115.54560 * 9.33696 * 14 13 11 16 16 C 1.52994 * 117.50230 * 223.62731 * 14 13 11 17 17 C 1.52996 * 117.50147 * 155.00031 * 14 13 11 18 18 H 1.09001 * 117.50255 * 214.98017 * 17 14 13 19 19 C 1.50702 * 117.49868 * 0.02562 * 17 14 13 20 20 C 1.38233 * 119.99845 * 59.72172 * 19 17 14 21 21 C 1.38235 * 119.99753 * 179.78738 * 20 19 17 22 22 C 1.38241 * 120.00141 * 0.44740 * 21 20 19 23 23 C 1.38235 * 119.99961 * 359.80755 * 22 21 20 24 24 C 1.38237 * 119.99810 * 359.97438 * 23 22 21 25 25 H 0.96998 * 119.99718 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.46877 * 59.99988 * 9 7 2 27 27 H 1.09002 * 109.46993 * 300.00334 * 9 7 2 28 28 H 0.96995 * 120.00292 * 0.27660 * 10 9 7 29 29 H 0.96999 * 120.00047 * 0.02562 * 13 11 10 30 30 H 1.09002 * 117.49767 * 359.97438 * 16 14 13 31 31 H 1.09000 * 117.50038 * 145.01758 * 16 14 13 32 32 H 1.07998 * 120.00278 * 0.02562 * 20 19 17 33 33 H 1.07997 * 120.00217 * 180.27281 * 21 20 19 34 34 H 1.08004 * 120.00275 * 179.83077 * 22 21 20 35 35 H 1.07996 * 120.00347 * 180.02562 * 23 22 21 36 36 H 1.08005 * 120.00136 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7536 -4.8834 0.0000 12 8 0.5583 -5.1055 -0.0009 13 7 2.6294 -5.9078 -0.0005 14 6 2.1411 -7.2890 -0.0005 15 1 1.0694 -7.4087 -0.1596 16 6 2.8321 -8.2827 0.9354 17 6 3.0650 -8.3650 -0.5746 18 1 2.6011 -9.1928 -1.1109 19 6 4.4079 -7.9230 -1.0962 20 6 5.3049 -7.2956 -0.2520 21 6 6.5385 -6.8941 -0.7295 22 6 6.8715 -7.1116 -2.0534 23 6 5.9724 -7.7343 -2.8989 24 6 4.7406 -8.1398 -2.4204 25 1 -0.4849 0.8400 -0.0004 26 1 0.6247 -2.5571 -0.8897 27 1 0.6239 -2.5567 0.8903 28 1 3.1566 -3.4355 0.0046 29 1 3.5831 -5.7306 -0.0001 30 1 3.6504 -7.9088 1.5508 31 1 2.2151 -9.0563 1.3924 32 1 5.0435 -7.1226 0.7814 33 1 7.2411 -6.4080 -0.0689 34 1 7.8343 -6.7955 -2.4271 35 1 6.2327 -7.9046 -3.9331 36 1 4.0379 -8.6259 -3.0810 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426432463.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:26 Heat of formation + Delta-G solvation = 15.526786 kcal Electronic energy + Delta-G solvation = -18478.978932 eV Core-core repulsion = 15542.601642 eV Total energy + Delta-G solvation = -2936.377290 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.15474 -38.88275 -36.96903 -34.09649 -32.75514 -31.97419 -31.05176 -30.46831 -27.04857 -23.97838 -23.09998 -22.73504 -21.47331 -20.40968 -20.08244 -18.20313 -17.20561 -16.10005 -15.97127 -15.29496 -14.98502 -14.66888 -14.59171 -14.15706 -13.94434 -13.55662 -13.19577 -12.96790 -12.75705 -12.07903 -11.96394 -11.93482 -11.33142 -11.15261 -11.07455 -10.96300 -10.83324 -10.57076 -10.28272 -9.43222 -9.36408 -9.05456 -8.88634 -8.70350 -8.35899 -7.73090 -6.13123 -4.19677 1.18514 1.25722 3.24002 3.27434 3.32421 3.35131 3.48131 3.81988 4.16711 4.34476 4.52417 4.70403 4.79243 4.87552 4.90471 4.98882 5.09169 5.18137 5.22883 5.32787 5.46800 5.68960 5.78693 5.89592 5.93280 5.99893 6.34389 6.38638 6.48769 6.85509 6.88113 7.13767 7.52483 7.56798 7.59338 7.92404 8.06113 8.77851 8.94771 9.33902 9.49518 10.97135 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.021833 B = 0.004431 C = 0.003887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.169788 B = 6318.025774 C = 7201.421778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.542 4.542 8 H 0.062 0.938 9 C 0.267 3.733 10 N -0.728 5.728 11 C 0.696 3.304 12 O -0.599 6.599 13 N -0.727 5.727 14 C 0.130 3.870 15 H 0.142 0.858 16 C -0.192 4.192 17 C -0.138 4.138 18 H 0.119 0.881 19 C -0.042 4.042 20 C -0.133 4.133 21 C -0.113 4.113 22 C -0.128 4.128 23 C -0.115 4.115 24 C -0.114 4.114 25 H 0.266 0.734 26 H 0.025 0.975 27 H 0.025 0.975 28 H 0.386 0.614 29 H 0.393 0.607 30 H 0.099 0.901 31 H 0.105 0.895 32 H 0.124 0.876 33 H 0.122 0.878 34 H 0.120 0.880 35 H 0.121 0.879 36 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.937 -17.062 -2.020 21.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.581 4.581 8 H 0.080 0.920 9 C 0.146 3.854 10 N -0.379 5.379 11 C 0.396 3.604 12 O -0.478 6.478 13 N -0.382 5.382 14 C 0.022 3.978 15 H 0.160 0.840 16 C -0.231 4.231 17 C -0.158 4.158 18 H 0.137 0.863 19 C -0.042 4.042 20 C -0.151 4.151 21 C -0.131 4.131 22 C -0.146 4.146 23 C -0.133 4.133 24 C -0.132 4.132 25 H 0.076 0.924 26 H 0.043 0.957 27 H 0.043 0.957 28 H 0.218 0.782 29 H 0.228 0.772 30 H 0.117 0.883 31 H 0.123 0.877 32 H 0.141 0.859 33 H 0.140 0.860 34 H 0.138 0.862 35 H 0.139 0.861 36 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 11.609 -17.027 -2.026 20.708 hybrid contribution 1.440 1.037 -0.038 1.775 sum 13.049 -15.990 -2.064 20.742 Atomic orbital electron populations 1.69970 1.06082 1.27361 1.48892 1.24935 0.94907 0.99354 0.94761 0.86472 0.79403 0.82348 0.78649 1.20108 1.21063 1.20098 1.21190 0.93224 0.90446 1.53209 0.92024 1.18994 0.87753 0.80986 0.97663 1.45719 1.10821 1.04347 1.77061 1.16097 0.85123 0.81003 0.78172 1.90858 1.14161 1.84152 1.58651 1.44641 1.08934 1.03816 1.80826 1.21381 0.97426 0.78310 1.00727 0.84027 1.23638 1.04160 1.03456 0.91835 1.21686 0.94982 1.02421 0.96720 0.86286 1.19104 0.93779 0.97573 0.93724 1.21115 0.94170 0.99911 0.99898 1.21148 0.96526 0.99547 0.95858 1.21150 0.99736 0.99748 0.93993 1.21144 0.93997 0.98480 0.99673 1.20969 0.96741 1.00647 0.94844 0.92413 0.95679 0.95663 0.78197 0.77185 0.88291 0.87657 0.85855 0.85952 0.86182 0.86100 0.86028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.38 13.29 55.43 0.74 -25.64 16 2 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 3 Si 0.90 21.05 29.54 -169.99 -5.02 16.02 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.54 -14.97 9.28 -34.44 -0.32 -15.29 16 8 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 9 C 0.27 7.29 5.43 -5.19 -0.03 7.26 16 10 N -0.73 -16.12 5.55 -66.41 -0.37 -16.49 16 11 C 0.70 14.89 8.57 -86.91 -0.74 14.14 16 12 O -0.60 -15.21 15.91 5.30 0.08 -15.13 16 13 N -0.73 -11.62 5.33 -58.68 -0.31 -11.93 16 14 C 0.13 1.76 6.38 -67.94 -0.43 1.33 16 15 H 0.14 2.11 7.40 -51.93 -0.38 1.73 16 16 C -0.19 -1.98 9.78 -26.73 -0.26 -2.24 16 17 C -0.14 -1.47 6.04 -91.77 -0.55 -2.03 16 18 H 0.12 1.07 8.14 -51.93 -0.42 0.65 16 19 C -0.04 -0.46 5.18 -104.62 -0.54 -1.00 16 20 C -0.13 -1.40 7.44 -39.58 -0.29 -1.69 16 21 C -0.11 -1.11 10.05 -39.58 -0.40 -1.50 16 22 C -0.13 -1.23 10.05 -39.58 -0.40 -1.62 16 23 C -0.11 -1.12 10.05 -39.58 -0.40 -1.52 16 24 C -0.11 -1.20 9.74 -39.58 -0.39 -1.59 16 25 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 26 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.39 7.41 8.34 -40.82 -0.34 7.07 16 29 H 0.39 5.49 6.18 -40.82 -0.25 5.23 16 30 H 0.10 0.98 6.18 -51.93 -0.32 0.66 16 31 H 0.11 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.12 1.19 5.81 -52.49 -0.31 0.89 16 33 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 34 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 35 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 36 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 LS Contribution 308.99 15.07 4.66 4.66 Total: -1.00 -33.00 308.99 -9.60 -42.60 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -4.52 Total: 9.96 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: -4.85 Total: -4.06 kcal Atomic # 7 Polarization: -54.11 SS G_CDS: 0.05 Total: -54.06 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: 0.08 Total: -15.13 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -33.00 -9.60 -42.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426432463.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.128 kcal (2) G-P(sol) polarization free energy of solvation -33.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds