Wall clock time and date at job start Mon Mar 30 2020 05:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00201 * 2 1 4 4 H 1.48503 * 109.47017 * 239.99738 * 3 2 1 5 5 H 1.48498 * 109.47024 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47228 * 120.00138 * 3 2 1 7 7 C 1.37876 * 119.99976 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00209 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99997 * 0.02562 * 7 2 1 10 10 N 1.46494 * 109.47011 * 179.97438 * 9 7 2 11 11 C 1.34784 * 119.99635 * 180.02562 * 10 9 7 12 12 O 1.21579 * 120.00114 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99908 * 179.97438 * 11 10 9 14 14 C 1.46496 * 120.00258 * 179.97438 * 13 11 10 15 15 H 1.09004 * 115.54560 * 9.33696 * 14 13 11 16 16 C 1.52994 * 117.50230 * 223.62731 * 14 13 11 17 17 C 1.52996 * 117.50147 * 155.00031 * 14 13 11 18 18 H 1.09001 * 117.50255 * 214.98017 * 17 14 13 19 19 C 1.50702 * 117.49868 * 0.02562 * 17 14 13 20 20 C 1.38233 * 119.99845 * 59.72172 * 19 17 14 21 21 C 1.38235 * 119.99753 * 179.78738 * 20 19 17 22 22 C 1.38241 * 120.00141 * 0.44740 * 21 20 19 23 23 C 1.38235 * 119.99961 * 359.80755 * 22 21 20 24 24 C 1.38237 * 119.99810 * 359.97438 * 23 22 21 25 25 H 0.96998 * 119.99718 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.46877 * 59.99988 * 9 7 2 27 27 H 1.09002 * 109.46993 * 300.00334 * 9 7 2 28 28 H 0.96995 * 120.00292 * 0.27660 * 10 9 7 29 29 H 0.96999 * 120.00047 * 0.02562 * 13 11 10 30 30 H 1.09002 * 117.49767 * 359.97438 * 16 14 13 31 31 H 1.09000 * 117.50038 * 145.01758 * 16 14 13 32 32 H 1.07998 * 120.00278 * 0.02562 * 20 19 17 33 33 H 1.07997 * 120.00217 * 180.27281 * 21 20 19 34 34 H 1.08004 * 120.00275 * 179.83077 * 22 21 20 35 35 H 1.07996 * 120.00347 * 180.02562 * 23 22 21 36 36 H 1.08005 * 120.00136 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7536 -4.8834 0.0000 12 8 0.5583 -5.1055 -0.0009 13 7 2.6294 -5.9078 -0.0005 14 6 2.1411 -7.2890 -0.0005 15 1 1.0694 -7.4087 -0.1596 16 6 2.8321 -8.2827 0.9354 17 6 3.0650 -8.3650 -0.5746 18 1 2.6011 -9.1928 -1.1109 19 6 4.4079 -7.9230 -1.0962 20 6 5.3049 -7.2956 -0.2520 21 6 6.5385 -6.8941 -0.7295 22 6 6.8715 -7.1116 -2.0534 23 6 5.9724 -7.7343 -2.8989 24 6 4.7406 -8.1398 -2.4204 25 1 -0.4849 0.8400 -0.0004 26 1 0.6247 -2.5571 -0.8897 27 1 0.6239 -2.5567 0.8903 28 1 3.1566 -3.4355 0.0046 29 1 3.5831 -5.7306 -0.0001 30 1 3.6504 -7.9088 1.5508 31 1 2.2151 -9.0563 1.3924 32 1 5.0435 -7.1226 0.7814 33 1 7.2411 -6.4080 -0.0689 34 1 7.8343 -6.7955 -2.4271 35 1 6.2327 -7.9046 -3.9331 36 1 4.0379 -8.6259 -3.0810 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426432463.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:26 Heat of formation + Delta-G solvation = -6.303952 kcal Electronic energy + Delta-G solvation = -18479.925584 eV Core-core repulsion = 15542.601642 eV Total energy + Delta-G solvation = -2937.323942 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.30397 -40.21337 -38.02371 -36.10518 -34.54833 -33.63454 -31.80496 -31.30987 -29.11160 -25.03971 -24.70998 -23.60418 -22.79759 -21.77671 -21.13883 -19.94565 -18.16092 -18.06254 -17.13449 -16.66884 -16.36735 -16.14139 -15.92316 -15.31687 -15.22775 -14.70048 -14.33924 -14.16529 -14.02048 -13.95595 -13.63212 -12.91991 -12.74496 -12.70656 -12.44935 -12.22989 -11.96433 -11.87415 -11.50847 -11.45572 -11.27753 -10.79060 -10.14248 -9.81166 -9.68060 -9.26112 -8.27668 -6.44412 0.40413 0.50343 1.43677 1.48377 1.56324 1.80322 2.13114 2.39964 2.74561 3.07068 3.17838 3.44791 3.65517 3.86674 3.91462 4.04905 4.16136 4.30768 4.37548 4.59929 4.71947 4.76419 4.91377 5.05587 5.11356 5.17789 5.18962 5.26776 5.48166 5.54562 5.60824 5.65213 5.67150 5.71383 5.84705 6.12903 6.21427 6.66446 7.22492 7.27286 7.68065 8.84556 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.021833 B = 0.004431 C = 0.003887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.169788 B = 6318.025774 C = 7201.421778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.005 3.995 3 Si 0.986 3.014 4 H -0.263 1.263 5 H -0.284 1.284 6 H -0.262 1.262 7 C -0.557 4.557 8 H 0.082 0.918 9 C 0.286 3.714 10 N -0.723 5.723 11 C 0.694 3.306 12 O -0.645 6.645 13 N -0.704 5.704 14 C 0.087 3.913 15 H 0.122 0.878 16 C -0.168 4.168 17 C -0.116 4.116 18 H 0.137 0.863 19 C -0.062 4.062 20 C -0.143 4.143 21 C -0.121 4.121 22 C -0.134 4.134 23 C -0.124 4.124 24 C -0.127 4.127 25 H 0.269 0.731 26 H -0.014 1.014 27 H -0.013 1.013 28 H 0.403 0.597 29 H 0.405 0.595 30 H 0.107 0.893 31 H 0.126 0.874 32 H 0.130 0.870 33 H 0.140 0.860 34 H 0.140 0.860 35 H 0.139 0.861 36 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.819 -17.310 -2.059 23.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.194 4.194 3 Si 0.809 3.191 4 H -0.187 1.187 5 H -0.210 1.210 6 H -0.186 1.186 7 C -0.595 4.595 8 H 0.100 0.900 9 C 0.163 3.837 10 N -0.376 5.376 11 C 0.394 3.606 12 O -0.528 6.528 13 N -0.359 5.359 14 C -0.020 4.020 15 H 0.139 0.861 16 C -0.207 4.207 17 C -0.136 4.136 18 H 0.155 0.845 19 C -0.062 4.062 20 C -0.161 4.161 21 C -0.139 4.139 22 C -0.151 4.151 23 C -0.141 4.141 24 C -0.145 4.145 25 H 0.078 0.922 26 H 0.004 0.996 27 H 0.005 0.995 28 H 0.238 0.762 29 H 0.243 0.757 30 H 0.126 0.874 31 H 0.144 0.856 32 H 0.147 0.853 33 H 0.158 0.842 34 H 0.158 0.842 35 H 0.157 0.843 36 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 14.569 -17.346 -2.064 22.746 hybrid contribution 0.574 0.990 -0.054 1.146 sum 15.142 -16.356 -2.118 22.390 Atomic orbital electron populations 1.70137 1.08265 1.28661 1.49805 1.26055 0.95778 1.03817 0.93782 0.85189 0.77900 0.76538 0.79462 1.18748 1.20968 1.18621 1.21557 0.94250 0.90473 1.53171 0.89958 1.18431 0.88051 0.83213 0.94049 1.45315 1.10857 1.03836 1.77620 1.16241 0.85074 0.81515 0.77764 1.90821 1.16495 1.84838 1.60604 1.44359 1.08689 1.03694 1.79198 1.21541 0.97358 0.77581 1.05544 0.86059 1.23737 1.03419 1.01586 0.91944 1.21733 0.93964 1.00629 0.97238 0.84533 1.19247 0.94045 0.98613 0.94272 1.21280 0.94560 0.99997 1.00240 1.21442 0.96628 0.99392 0.96418 1.21488 1.00556 0.99134 0.93970 1.21449 0.93766 0.98157 1.00771 1.21217 0.97459 1.00900 0.94949 0.92194 0.99625 0.99455 0.76247 0.75712 0.87439 0.85632 0.85258 0.84192 0.84203 0.84299 0.85126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.73 13.29 21.45 0.28 -56.45 16 2 C 0.01 0.30 5.46 84.65 0.46 0.77 16 3 Si 0.99 42.63 29.54 68.60 2.03 44.66 16 4 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 5 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 6 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 7 C -0.56 -30.90 9.28 25.60 0.24 -30.66 16 8 H 0.08 4.13 7.60 -2.91 -0.02 4.10 16 9 C 0.29 16.26 5.43 85.64 0.46 16.72 16 10 N -0.72 -32.68 5.55 -482.29 -2.68 -35.36 16 11 C 0.69 30.50 8.57 179.05 1.53 32.03 16 12 O -0.65 -34.37 15.91 -3.96 -0.06 -34.43 16 13 N -0.70 -22.37 5.33 -457.84 -2.44 -24.81 16 14 C 0.09 2.31 6.38 44.99 0.29 2.60 16 15 H 0.12 3.75 7.40 -2.39 -0.02 3.73 16 16 C -0.17 -3.12 9.78 30.59 0.30 -2.82 16 17 C -0.12 -2.27 6.04 -11.54 -0.07 -2.34 16 18 H 0.14 2.17 8.14 -2.39 -0.02 2.15 16 19 C -0.06 -1.25 5.18 -19.86 -0.10 -1.35 16 20 C -0.14 -2.71 7.44 22.27 0.17 -2.54 16 21 C -0.12 -2.08 10.05 22.27 0.22 -1.86 16 22 C -0.13 -2.22 10.05 22.27 0.22 -2.00 16 23 C -0.12 -2.15 10.05 22.27 0.22 -1.93 16 24 C -0.13 -2.46 9.74 22.27 0.22 -2.24 16 25 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 26 H -0.01 -0.91 8.14 -2.38 -0.02 -0.93 16 27 H -0.01 -0.80 8.14 -2.39 -0.02 -0.81 16 28 H 0.40 15.27 8.34 -92.71 -0.77 14.50 16 29 H 0.41 10.87 6.18 -92.71 -0.57 10.30 16 30 H 0.11 1.84 6.18 -2.39 -0.01 1.83 16 31 H 0.13 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.13 2.20 5.81 -2.91 -0.02 2.19 16 33 H 0.14 1.83 8.06 -2.91 -0.02 1.80 16 34 H 0.14 1.70 8.06 -2.91 -0.02 1.67 16 35 H 0.14 1.81 8.06 -2.91 -0.02 1.79 16 36 H 0.13 2.17 8.06 -2.91 -0.02 2.15 16 Total: -1.00 -73.72 308.99 1.06 -72.67 By element: Atomic # 1 Polarization: 29.58 SS G_CDS: -0.24 Total: 29.35 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: 4.17 Total: 4.38 kcal Atomic # 7 Polarization: -111.78 SS G_CDS: -4.83 Total: -116.62 kcal Atomic # 8 Polarization: -34.37 SS G_CDS: -0.06 Total: -34.43 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -73.72 1.06 -72.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426432463.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.361 kcal (2) G-P(sol) polarization free energy of solvation -73.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds