Wall clock time and date at job start Mon Mar 30 2020 05:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 119.99948 * 2 1 4 4 H 1.48503 * 109.47357 * 270.00627 * 3 2 1 5 5 H 1.48501 * 109.47025 * 30.00024 * 3 2 1 6 6 H 1.48502 * 109.47198 * 150.00274 * 3 2 1 7 7 C 1.37873 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00054 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00014 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47336 * 179.97438 * 9 7 2 11 11 C 1.34779 * 120.00202 * 179.97438 * 10 9 7 12 12 O 1.21583 * 119.99986 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00201 * 180.02562 * 11 10 9 14 14 C 1.46496 * 120.00133 * 179.97438 * 13 11 10 15 15 C 1.50698 * 109.46826 * 179.97438 * 14 13 11 16 16 C 1.32568 * 119.99964 * 125.00111 * 15 14 13 17 17 C 1.47818 * 120.00099 * 179.97438 * 16 15 14 18 18 C 1.39530 * 120.13805 * 179.97438 * 17 16 15 19 19 C 1.37975 * 119.85264 * 179.97438 * 18 17 16 20 20 C 1.38345 * 120.14230 * 0.02562 * 19 18 17 21 21 C 1.38342 * 120.28567 * 359.97438 * 20 19 18 22 22 C 1.37970 * 120.14109 * 0.02562 * 21 20 19 23 23 H 0.96998 * 120.00459 * 359.97438 * 1 2 3 24 24 H 1.08995 * 109.47544 * 59.99725 * 9 7 2 25 25 H 1.09000 * 109.47132 * 299.99903 * 9 7 2 26 26 H 0.96998 * 119.99793 * 0.02562 * 10 9 7 27 27 H 0.97002 * 119.99569 * 359.97438 * 13 11 10 28 28 H 1.08997 * 109.46958 * 59.99661 * 14 13 11 29 29 H 1.08993 * 109.47195 * 299.99637 * 14 13 11 30 30 H 1.08001 * 120.00191 * 304.99361 * 15 14 13 31 31 H 1.08001 * 119.99850 * 359.97438 * 16 15 14 32 32 H 1.08001 * 120.07796 * 0.02562 * 18 17 16 33 33 H 1.08003 * 119.92978 * 179.72663 * 19 18 17 34 34 H 1.08000 * 119.85265 * 179.97438 * 20 19 18 35 35 H 1.08003 * 119.92532 * 179.97438 * 21 20 19 36 36 H 1.08004 * 120.06942 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 7 2.2031 -3.6126 -0.0027 11 6 1.7538 -4.8833 -0.0033 12 8 0.5585 -5.1055 -0.0026 13 7 2.6297 -5.9077 -0.0037 14 6 2.1414 -7.2889 -0.0038 15 6 3.3135 -8.2360 -0.0049 16 6 3.4159 -9.1651 0.9352 17 6 4.5653 -10.0945 0.9338 18 6 4.6761 -11.0731 1.9222 19 6 5.7512 -11.9379 1.9150 20 6 6.7183 -11.8359 0.9309 21 6 6.6142 -10.8678 -0.0518 22 6 5.5440 -9.9969 -0.0558 23 1 -0.4851 0.8400 0.0004 24 1 0.6247 -2.5563 -0.8919 25 1 0.6241 -2.5574 0.8880 26 1 3.1567 -3.4353 -0.0022 27 1 3.5833 -5.7304 -0.0039 28 1 1.5356 -7.4600 -0.8936 29 1 1.5361 -7.4604 0.8863 30 1 4.0702 -8.1580 -0.7716 31 1 2.6594 -9.2430 1.7021 32 1 3.9217 -11.1541 2.6907 33 1 5.8406 -12.6930 2.6820 34 1 7.5581 -12.5149 0.9300 35 1 7.3727 -10.7930 -0.8170 36 1 5.4637 -9.2418 -0.8239 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426434368.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:24 Heat of formation + Delta-G solvation = 1.450127 kcal Electronic energy + Delta-G solvation = -17411.877985 eV Core-core repulsion = 14474.890285 eV Total energy + Delta-G solvation = -2936.987700 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.52596 -39.10732 -35.87261 -34.10479 -33.40165 -32.24003 -31.26369 -30.12044 -27.31931 -25.53925 -23.22926 -22.59419 -21.94734 -20.27359 -19.58692 -17.94520 -17.45081 -16.19096 -15.79484 -15.48158 -15.22564 -14.81900 -14.61028 -14.18506 -13.70366 -13.61006 -13.29134 -13.14627 -13.01351 -12.65130 -11.94761 -11.86228 -11.64559 -11.34528 -11.11495 -10.93550 -10.86882 -10.52016 -10.28209 -9.42243 -9.34629 -9.25123 -8.78904 -8.67392 -8.36270 -7.72747 -6.13157 -4.19627 0.61302 1.11214 2.18445 3.26281 3.31847 3.34397 3.50797 3.68563 3.98126 4.34728 4.40267 4.50347 4.66757 4.77295 4.94529 5.06434 5.14292 5.17096 5.22842 5.31491 5.59260 5.65763 5.73530 5.81640 6.02219 6.15096 6.21116 6.38790 6.52971 6.69103 6.88338 7.15009 7.54392 7.58088 7.60018 7.93629 8.07155 8.79130 8.97222 9.35873 9.50661 10.97134 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.040291 B = 0.002669 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.772652 B =10490.138958 C =10920.442700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.541 4.541 8 H 0.062 0.938 9 C 0.267 3.733 10 N -0.729 5.729 11 C 0.692 3.308 12 O -0.602 6.602 13 N -0.756 5.756 14 C 0.170 3.830 15 C -0.151 4.151 16 C -0.108 4.108 17 C -0.053 4.053 18 C -0.109 4.109 19 C -0.120 4.120 20 C -0.124 4.124 21 C -0.119 4.119 22 C -0.115 4.115 23 H 0.265 0.735 24 H 0.025 0.975 25 H 0.025 0.975 26 H 0.386 0.614 27 H 0.392 0.608 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.119 0.881 31 H 0.123 0.877 32 H 0.125 0.875 33 H 0.122 0.878 34 H 0.120 0.880 35 H 0.122 0.878 36 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.624 -22.284 1.498 26.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.580 4.580 8 H 0.080 0.920 9 C 0.145 3.855 10 N -0.382 5.382 11 C 0.392 3.608 12 O -0.481 6.481 13 N -0.413 5.413 14 C 0.045 3.955 15 C -0.169 4.169 16 C -0.127 4.127 17 C -0.053 4.053 18 C -0.127 4.127 19 C -0.138 4.138 20 C -0.142 4.142 21 C -0.137 4.137 22 C -0.133 4.133 23 H 0.075 0.925 24 H 0.043 0.957 25 H 0.043 0.957 26 H 0.218 0.782 27 H 0.225 0.775 28 H 0.092 0.908 29 H 0.086 0.914 30 H 0.137 0.863 31 H 0.141 0.859 32 H 0.143 0.857 33 H 0.140 0.860 34 H 0.138 0.862 35 H 0.140 0.860 36 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 12.290 -22.306 1.499 25.511 hybrid contribution 1.354 1.029 -0.017 1.701 sum 13.644 -21.277 1.482 25.319 Atomic orbital electron populations 1.69977 1.06084 1.27245 1.48997 1.24948 0.94921 0.99402 0.94808 0.86410 0.79593 0.82671 0.78178 1.20492 1.21023 1.19791 1.21229 0.93265 0.90452 1.53033 0.91956 1.18980 0.87798 0.81071 0.97616 1.45715 1.10790 1.04401 1.77249 1.16156 0.85175 0.81068 0.78397 1.90871 1.14259 1.84238 1.58710 1.45128 1.08910 1.04761 1.82530 1.20028 0.93627 0.79232 1.02568 1.23493 0.98782 0.96203 0.98430 1.21742 0.96520 0.95629 0.98849 1.19105 0.94887 0.95903 0.95452 1.21307 0.98298 0.94908 0.98229 1.21108 0.94603 0.99307 0.98826 1.21222 0.99082 0.98678 0.95195 1.21106 0.98114 0.95617 0.98851 1.21366 0.94136 0.99343 0.98426 0.92475 0.95743 0.95733 0.78157 0.77484 0.90816 0.91406 0.86347 0.85873 0.85741 0.85991 0.86171 0.85957 0.85638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.39 13.29 55.43 0.74 -25.65 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.54 -14.90 9.28 -34.44 -0.32 -15.22 16 8 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 9 C 0.27 7.25 5.43 -5.20 -0.03 7.23 16 10 N -0.73 -15.93 5.55 -66.42 -0.37 -16.29 16 11 C 0.69 14.61 8.57 -86.91 -0.74 13.86 16 12 O -0.60 -15.36 16.34 5.29 0.09 -15.27 16 13 N -0.76 -11.46 5.55 -66.42 -0.37 -11.83 16 14 C 0.17 2.21 6.12 -5.20 -0.03 2.18 16 15 C -0.15 -1.48 9.05 -36.22 -0.33 -1.81 16 16 C -0.11 -1.02 9.52 -37.57 -0.36 -1.38 16 17 C -0.05 -0.50 5.87 -105.02 -0.62 -1.12 16 18 C -0.11 -0.93 9.79 -39.20 -0.38 -1.31 16 19 C -0.12 -0.92 10.03 -39.64 -0.40 -1.32 16 20 C -0.12 -0.92 10.04 -39.50 -0.40 -1.32 16 21 C -0.12 -0.93 10.03 -39.64 -0.40 -1.33 16 22 C -0.11 -1.00 9.40 -39.20 -0.37 -1.37 16 23 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 24 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.02 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.39 7.18 8.34 -40.82 -0.34 6.84 16 27 H 0.39 4.77 8.48 -40.82 -0.35 4.43 16 28 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 29 H 0.07 0.93 7.81 -51.93 -0.41 0.53 16 30 H 0.12 1.01 6.04 -52.49 -0.32 0.69 16 31 H 0.12 1.07 7.87 -52.49 -0.41 0.66 16 32 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 33 H 0.12 0.67 8.06 -52.48 -0.42 0.25 16 34 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 35 H 0.12 0.72 8.06 -52.48 -0.42 0.30 16 36 H 0.13 0.94 6.17 -52.48 -0.32 0.62 16 LS Contribution 317.43 15.07 4.78 4.78 Total: -1.00 -33.75 317.43 -9.26 -43.00 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -4.64 Total: 6.51 kcal Atomic # 6 Polarization: 3.21 SS G_CDS: -4.47 Total: -1.26 kcal Atomic # 7 Polarization: -53.78 SS G_CDS: 0.00 Total: -53.78 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: 0.09 Total: -15.27 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -33.75 -9.26 -43.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426434368.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.455 kcal (2) G-P(sol) polarization free energy of solvation -33.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds