Wall clock time and date at job start Mon Mar 30 2020 05:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 119.99948 * 2 1 4 4 H 1.48503 * 109.47357 * 270.00627 * 3 2 1 5 5 H 1.48501 * 109.47025 * 30.00024 * 3 2 1 6 6 H 1.48502 * 109.47198 * 150.00274 * 3 2 1 7 7 C 1.37873 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00054 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00014 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47336 * 179.97438 * 9 7 2 11 11 C 1.34779 * 120.00202 * 179.97438 * 10 9 7 12 12 O 1.21583 * 119.99986 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00201 * 180.02562 * 11 10 9 14 14 C 1.46496 * 120.00133 * 179.97438 * 13 11 10 15 15 C 1.50698 * 109.46826 * 179.97438 * 14 13 11 16 16 C 1.32568 * 119.99964 * 125.00111 * 15 14 13 17 17 C 1.47818 * 120.00099 * 179.97438 * 16 15 14 18 18 C 1.39530 * 120.13805 * 179.97438 * 17 16 15 19 19 C 1.37975 * 119.85264 * 179.97438 * 18 17 16 20 20 C 1.38345 * 120.14230 * 0.02562 * 19 18 17 21 21 C 1.38342 * 120.28567 * 359.97438 * 20 19 18 22 22 C 1.37970 * 120.14109 * 0.02562 * 21 20 19 23 23 H 0.96998 * 120.00459 * 359.97438 * 1 2 3 24 24 H 1.08995 * 109.47544 * 59.99725 * 9 7 2 25 25 H 1.09000 * 109.47132 * 299.99903 * 9 7 2 26 26 H 0.96998 * 119.99793 * 0.02562 * 10 9 7 27 27 H 0.97002 * 119.99569 * 359.97438 * 13 11 10 28 28 H 1.08997 * 109.46958 * 59.99661 * 14 13 11 29 29 H 1.08993 * 109.47195 * 299.99637 * 14 13 11 30 30 H 1.08001 * 120.00191 * 304.99361 * 15 14 13 31 31 H 1.08001 * 119.99850 * 359.97438 * 16 15 14 32 32 H 1.08001 * 120.07796 * 0.02562 * 18 17 16 33 33 H 1.08003 * 119.92978 * 179.72663 * 19 18 17 34 34 H 1.08000 * 119.85265 * 179.97438 * 20 19 18 35 35 H 1.08003 * 119.92532 * 179.97438 * 21 20 19 36 36 H 1.08004 * 120.06942 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 7 2.2031 -3.6126 -0.0027 11 6 1.7538 -4.8833 -0.0033 12 8 0.5585 -5.1055 -0.0026 13 7 2.6297 -5.9077 -0.0037 14 6 2.1414 -7.2889 -0.0038 15 6 3.3135 -8.2360 -0.0049 16 6 3.4159 -9.1651 0.9352 17 6 4.5653 -10.0945 0.9338 18 6 4.6761 -11.0731 1.9222 19 6 5.7512 -11.9379 1.9150 20 6 6.7183 -11.8359 0.9309 21 6 6.6142 -10.8678 -0.0518 22 6 5.5440 -9.9969 -0.0558 23 1 -0.4851 0.8400 0.0004 24 1 0.6247 -2.5563 -0.8919 25 1 0.6241 -2.5574 0.8880 26 1 3.1567 -3.4353 -0.0022 27 1 3.5833 -5.7304 -0.0039 28 1 1.5356 -7.4600 -0.8936 29 1 1.5361 -7.4604 0.8863 30 1 4.0702 -8.1580 -0.7716 31 1 2.6594 -9.2430 1.7021 32 1 3.9217 -11.1541 2.6907 33 1 5.8406 -12.6930 2.6820 34 1 7.5581 -12.5149 0.9300 35 1 7.3727 -10.7930 -0.8170 36 1 5.4637 -9.2418 -0.8239 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426434368.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:24 Heat of formation + Delta-G solvation = -21.350890 kcal Electronic energy + Delta-G solvation = -17412.866711 eV Core-core repulsion = 14474.890285 eV Total energy + Delta-G solvation = -2937.976426 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.87731 -40.05080 -37.01899 -36.03710 -34.66685 -34.14531 -31.84410 -31.05971 -29.17852 -26.73544 -24.54906 -23.78485 -22.79705 -21.90155 -20.58739 -19.56280 -18.18014 -17.95217 -17.32431 -16.63860 -16.47878 -16.17930 -15.78373 -15.33214 -14.95793 -14.89348 -14.36297 -14.15387 -14.03391 -13.86517 -13.81885 -13.44674 -12.88730 -12.70419 -12.51461 -12.21337 -11.99710 -11.74265 -11.46686 -11.40433 -11.12164 -10.79587 -10.28465 -9.83821 -9.59355 -9.07767 -8.27289 -6.43767 -0.06216 0.52497 1.40455 1.45114 1.47230 1.58436 2.08284 2.24600 2.41666 3.02912 3.07574 3.56763 3.64899 3.87509 4.12611 4.19183 4.27094 4.38148 4.54547 4.58795 4.69488 4.74582 5.07307 5.10447 5.16328 5.28202 5.33269 5.43981 5.50117 5.56497 5.63591 5.67643 5.68989 5.84710 5.86307 6.11665 6.27958 6.68055 7.25431 7.32370 7.72549 8.85126 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.040291 B = 0.002669 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.772652 B =10490.138958 C =10920.442700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.987 3.013 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.256 1.256 7 C -0.555 4.555 8 H 0.084 0.916 9 C 0.284 3.716 10 N -0.723 5.723 11 C 0.690 3.310 12 O -0.650 6.650 13 N -0.730 5.730 14 C 0.170 3.830 15 C -0.154 4.154 16 C -0.096 4.096 17 C -0.076 4.076 18 C -0.120 4.120 19 C -0.129 4.129 20 C -0.127 4.127 21 C -0.129 4.129 22 C -0.125 4.125 23 H 0.269 0.731 24 H -0.014 1.014 25 H -0.015 1.015 26 H 0.405 0.595 27 H 0.411 0.589 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.136 0.864 31 H 0.126 0.874 32 H 0.135 0.865 33 H 0.142 0.858 34 H 0.142 0.858 35 H 0.141 0.859 36 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.617 -22.819 1.603 28.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.810 3.190 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.179 1.179 7 C -0.592 4.592 8 H 0.102 0.898 9 C 0.161 3.839 10 N -0.377 5.377 11 C 0.390 3.610 12 O -0.533 6.533 13 N -0.387 5.387 14 C 0.046 3.954 15 C -0.172 4.172 16 C -0.115 4.115 17 C -0.076 4.076 18 C -0.138 4.138 19 C -0.147 4.147 20 C -0.145 4.145 21 C -0.146 4.146 22 C -0.143 4.143 23 H 0.078 0.922 24 H 0.004 0.996 25 H 0.003 0.997 26 H 0.240 0.760 27 H 0.248 0.752 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.154 0.846 31 H 0.144 0.856 32 H 0.152 0.848 33 H 0.160 0.840 34 H 0.160 0.840 35 H 0.159 0.841 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 15.370 -22.899 1.604 27.625 hybrid contribution 0.445 1.014 -0.016 1.108 sum 15.815 -21.884 1.588 27.047 Atomic orbital electron populations 1.70142 1.08278 1.28571 1.49964 1.26080 0.95805 1.03914 0.93899 0.85127 0.78437 0.76853 0.78591 1.19571 1.20957 1.17937 1.21600 0.94322 0.90451 1.52868 0.89802 1.18418 0.88134 0.83363 0.93976 1.45301 1.10931 1.03798 1.77663 1.16335 0.85105 0.81641 0.77959 1.90837 1.16779 1.84977 1.60712 1.44914 1.09131 1.04340 1.80355 1.20112 0.95055 0.78363 1.01846 1.23228 0.98246 0.96043 0.99719 1.21854 0.96428 0.95017 0.98237 1.19206 0.95246 0.96637 0.96508 1.21555 0.98995 0.94904 0.98349 1.21420 0.94283 0.99519 0.99429 1.21583 0.99537 0.98654 0.94677 1.21412 0.98309 0.95444 0.99482 1.21587 0.94315 0.99879 0.98528 0.92236 0.99630 0.99662 0.75957 0.75245 0.91646 0.92275 0.84646 0.85569 0.84752 0.84026 0.84027 0.84136 0.84746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.77 13.29 21.45 0.28 -56.48 16 2 C 0.00 0.14 5.46 84.65 0.46 0.60 16 3 Si 0.99 42.59 29.54 68.60 2.03 44.61 16 4 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 5 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 6 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 7 C -0.55 -30.58 9.28 25.60 0.24 -30.34 16 8 H 0.08 4.16 7.60 -2.91 -0.02 4.14 16 9 C 0.28 16.06 5.43 85.63 0.46 16.53 16 10 N -0.72 -31.87 5.55 -482.31 -2.68 -34.55 16 11 C 0.69 29.52 8.57 179.05 1.53 31.06 16 12 O -0.65 -34.46 16.34 -3.98 -0.07 -34.53 16 13 N -0.73 -21.60 5.55 -482.32 -2.68 -24.28 16 14 C 0.17 4.36 6.12 85.63 0.52 4.88 16 15 C -0.15 -2.82 9.05 24.53 0.22 -2.60 16 16 C -0.10 -1.70 9.52 23.65 0.23 -1.48 16 17 C -0.08 -1.31 5.87 -20.12 -0.12 -1.43 16 18 C -0.12 -1.86 9.79 22.52 0.22 -1.64 16 19 C -0.13 -1.69 10.03 22.23 0.22 -1.47 16 20 C -0.13 -1.58 10.04 22.32 0.22 -1.36 16 21 C -0.13 -1.73 10.03 22.23 0.22 -1.51 16 22 C -0.13 -1.96 9.40 22.52 0.21 -1.75 16 23 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 24 H -0.01 -0.90 8.14 -2.39 -0.02 -0.92 16 25 H -0.01 -0.93 8.14 -2.39 -0.02 -0.95 16 26 H 0.41 14.61 8.34 -92.71 -0.77 13.84 16 27 H 0.41 9.21 8.48 -92.71 -0.79 8.43 16 28 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.06 1.64 7.81 -2.39 -0.02 1.62 16 30 H 0.14 2.02 6.04 -2.91 -0.02 2.00 16 31 H 0.13 2.09 7.87 -2.91 -0.02 2.07 16 32 H 0.13 1.68 8.06 -2.91 -0.02 1.65 16 33 H 0.14 1.21 8.06 -2.91 -0.02 1.19 16 34 H 0.14 1.09 8.06 -2.91 -0.02 1.06 16 35 H 0.14 1.29 8.06 -2.91 -0.02 1.26 16 36 H 0.13 1.74 6.17 -2.91 -0.02 1.72 16 Total: -1.00 -74.93 317.43 1.08 -73.85 By element: Atomic # 1 Polarization: 22.34 SS G_CDS: -0.46 Total: 21.88 kcal Atomic # 6 Polarization: 4.85 SS G_CDS: 4.65 Total: 9.50 kcal Atomic # 7 Polarization: -110.24 SS G_CDS: -5.07 Total: -115.31 kcal Atomic # 8 Polarization: -34.46 SS G_CDS: -0.07 Total: -34.53 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.61 kcal Total: -74.93 1.08 -73.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426434368.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.497 kcal (2) G-P(sol) polarization free energy of solvation -74.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds