Wall clock time and date at job start Mon Mar 30 2020 04:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86793 * 120.00205 * 2 1 4 4 H 1.48500 * 109.47354 * 240.00325 * 3 2 1 5 5 H 1.48504 * 109.46836 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47409 * 119.99822 * 3 2 1 7 7 C 1.37879 * 119.99831 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99975 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00439 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47384 * 180.02562 * 9 7 2 11 11 N 1.46497 * 109.46790 * 180.02562 * 10 9 7 12 12 C 1.34776 * 119.99828 * 179.97438 * 11 10 9 13 13 O 1.21600 * 120.00129 * 0.02562 * 12 11 10 14 14 C 1.47579 * 120.00407 * 179.97438 * 12 11 10 15 15 C 1.36471 * 125.92554 * 180.02562 * 14 12 11 16 16 N 1.36184 * 107.01906 * 179.97438 * 15 14 12 17 17 C 1.36675 * 132.45056 * 180.02562 * 16 15 14 18 18 C 1.35471 * 119.10251 * 179.97438 * 17 16 15 19 19 C 1.40303 * 119.36179 * 0.02562 * 18 17 16 20 20 N 1.31144 * 120.41003 * 0.02562 * 19 18 17 21 21 C 1.34281 * 120.94374 * 359.97438 * 20 19 18 22 22 N 1.32212 * 131.65397 * 180.02562 * 21 20 19 23 23 H 0.96992 * 120.00139 * 0.02562 * 1 2 3 24 24 H 1.09011 * 109.46660 * 60.00111 * 9 7 2 25 25 H 1.09001 * 109.46991 * 300.00903 * 9 7 2 26 26 H 1.08997 * 109.47162 * 60.00396 * 10 9 7 27 27 H 1.08996 * 109.46952 * 300.00289 * 10 9 7 28 28 H 0.96998 * 120.00536 * 0.02562 * 11 10 9 29 29 H 1.08007 * 126.49116 * 359.96106 * 15 14 12 30 30 H 1.08000 * 120.44961 * 0.02562 * 17 16 15 31 31 H 1.08004 * 120.32036 * 180.02562 * 18 17 16 32 32 H 1.07996 * 119.79608 * 180.27500 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0017 10 6 2.2453 -3.6622 0.0027 11 7 1.5127 -4.9308 0.0033 12 6 2.1866 -6.0980 0.0037 13 8 3.4026 -6.0981 0.0041 14 6 1.4488 -7.3761 0.0048 15 6 2.0055 -8.6221 0.0058 16 7 0.9792 -9.5173 0.0071 17 6 0.9469 -10.8836 0.0090 18 6 -0.2520 -11.5144 0.0106 19 6 -1.4302 -10.7525 0.0097 20 7 -1.3734 -9.4423 0.0069 21 6 -0.1929 -8.8023 0.0053 22 7 0.1088 -7.5151 0.0030 23 1 -0.4850 0.8400 -0.0004 24 1 0.6240 -2.5575 -0.8881 25 1 0.6246 -2.5563 0.8919 26 1 2.8719 -3.6037 0.8927 27 1 2.8719 -3.6052 -0.8872 28 1 0.5428 -4.9308 0.0026 29 1 3.0603 -8.8543 0.0053 30 1 1.8647 -11.4528 0.0100 31 1 -0.3005 -12.5933 0.0124 32 1 -2.3897 -11.2480 0.0154 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000544258796.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:55 Heat of formation + Delta-G solvation = 65.398574 kcal Electronic energy + Delta-G solvation = -17837.656595 eV Core-core repulsion = 14799.901564 eV Total energy + Delta-G solvation = -3037.755031 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.29197 -39.35319 -38.07384 -34.98014 -34.79132 -32.78990 -31.46178 -29.78298 -29.38011 -25.89990 -24.58133 -23.55520 -22.90699 -20.88167 -20.08944 -18.71781 -17.91983 -17.01940 -16.66295 -16.34677 -15.95501 -15.08329 -14.80720 -14.74022 -14.42096 -14.29376 -13.43392 -13.20241 -13.15451 -12.64376 -12.24089 -12.09068 -11.15855 -10.97363 -10.86250 -10.61673 -10.26700 -10.20608 -9.98534 -9.48783 -9.47840 -9.20687 -8.57594 -8.44954 -8.28211 -6.02308 -4.05563 0.08863 0.68283 1.90494 1.97515 3.13970 3.16062 3.35703 3.39347 3.42053 3.61097 3.67354 3.93661 4.11367 4.34155 4.47511 4.63289 4.90215 5.09574 5.16297 5.21494 5.34166 5.73429 6.04483 6.14318 6.39368 6.39530 6.78133 6.92047 7.16067 7.52292 7.61656 7.70065 7.95464 8.07193 8.33183 8.60666 9.00181 9.58656 11.09283 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.048494 B = 0.003375 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.250110 B = 8294.939098 C = 8851.742521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.898 3.102 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.522 4.522 8 H 0.059 0.941 9 C 0.011 3.989 10 C 0.120 3.880 11 N -0.699 5.699 12 C 0.589 3.411 13 O -0.545 6.545 14 C 0.032 3.968 15 C -0.019 4.019 16 N -0.403 5.403 17 C 0.112 3.888 18 C -0.206 4.206 19 C 0.170 3.830 20 N -0.429 5.429 21 C 0.375 3.625 22 N -0.438 5.438 23 H 0.263 0.737 24 H 0.024 0.976 25 H 0.024 0.976 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.409 0.591 29 H 0.201 0.799 30 H 0.177 0.823 31 H 0.166 0.834 32 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.665 -26.921 0.032 26.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.561 4.561 8 H 0.077 0.923 9 C -0.026 4.026 10 C -0.001 4.001 11 N -0.347 5.347 12 C 0.372 3.628 13 O -0.423 6.423 14 C -0.102 4.102 15 C -0.154 4.154 16 N -0.081 5.081 17 C -0.019 4.019 18 C -0.229 4.229 19 C -0.019 4.019 20 N -0.140 5.140 21 C 0.025 3.975 22 N -0.162 5.162 23 H 0.072 0.928 24 H 0.043 0.957 25 H 0.043 0.957 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.244 0.756 29 H 0.218 0.782 30 H 0.194 0.806 31 H 0.184 0.816 32 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -1.110 -25.298 0.029 25.322 hybrid contribution 1.157 -0.371 0.001 1.215 sum 0.047 -25.669 0.030 25.669 Atomic orbital electron populations 1.69954 1.06078 1.26951 1.50182 1.25002 0.94885 0.99373 0.95047 0.86567 0.79490 0.82706 0.78720 1.20141 1.21273 1.20135 1.21008 0.93181 0.90365 1.51546 0.92260 1.19338 0.94211 0.90906 0.98148 1.21830 0.96147 0.81139 1.01029 1.46214 1.11447 1.05872 1.71171 1.16859 0.86202 0.82033 0.77657 1.90784 1.12517 1.87122 1.51908 1.21015 0.89256 0.94457 1.05516 1.22626 0.93882 0.87481 1.11391 1.43914 1.10685 1.06797 1.46681 1.22253 1.01517 0.81142 0.96947 1.21841 0.91631 1.02933 1.06485 1.23376 0.99571 0.87928 0.91038 1.67982 1.21176 1.10718 1.14139 1.21922 0.81781 0.88266 1.05492 1.70863 1.12930 1.11787 1.20602 0.92787 0.95740 0.95750 0.92175 0.92186 0.75618 0.78199 0.80569 0.81642 0.79909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.89 13.29 55.43 0.74 -26.15 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.52 -14.88 9.11 -34.44 -0.31 -15.19 16 8 H 0.06 1.63 7.74 -52.48 -0.41 1.23 16 9 C 0.01 0.30 5.09 -27.88 -0.14 0.15 16 10 C 0.12 2.70 5.61 -4.04 -0.02 2.67 16 11 N -0.70 -13.96 5.55 -61.34 -0.34 -14.30 16 12 C 0.59 11.25 7.82 -12.45 -0.10 11.16 16 13 O -0.55 -11.42 16.87 5.28 0.09 -11.33 16 14 C 0.03 0.52 6.94 -83.43 -0.58 -0.06 16 15 C -0.02 -0.24 11.47 -16.26 -0.19 -0.42 16 16 N -0.40 -4.46 2.93 -64.14 -0.19 -4.65 16 17 C 0.11 0.67 11.05 -16.38 -0.18 0.49 16 18 C -0.21 -0.86 10.06 -39.79 -0.40 -1.26 16 19 C 0.17 1.13 11.27 -17.07 -0.19 0.94 16 20 N -0.43 -5.30 10.48 -13.67 -0.14 -5.44 16 21 C 0.37 5.42 8.90 -322.42 -2.87 2.55 16 22 N -0.44 -7.55 11.01 -11.03 -0.12 -7.67 16 23 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 24 H 0.02 0.66 8.14 -51.92 -0.42 0.24 16 25 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 27 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 28 H 0.41 7.90 8.17 -40.82 -0.33 7.57 16 29 H 0.20 1.91 8.06 -52.48 -0.42 1.49 16 30 H 0.18 0.33 8.06 -52.49 -0.42 -0.09 16 31 H 0.17 0.00 8.06 -52.48 -0.42 -0.42 16 32 H 0.18 0.46 8.06 -52.49 -0.42 0.04 16 LS Contribution 292.79 15.07 4.41 4.41 Total: -1.00 -36.38 292.79 -8.92 -45.30 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: -3.26 Total: 0.42 kcal Atomic # 6 Polarization: 7.70 SS G_CDS: -5.08 Total: 2.62 kcal Atomic # 7 Polarization: -58.16 SS G_CDS: -0.06 Total: -58.22 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.09 Total: -11.33 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -36.38 -8.92 -45.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000544258796.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.695 kcal (2) G-P(sol) polarization free energy of solvation -36.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds