Wall clock time and date at job start Mon Mar 30 2020 04:33:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86793 * 120.00205 * 2 1 4 4 H 1.48500 * 109.47354 * 240.00325 * 3 2 1 5 5 H 1.48504 * 109.46836 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47409 * 119.99822 * 3 2 1 7 7 C 1.37879 * 119.99831 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99975 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00439 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47384 * 180.02562 * 9 7 2 11 11 N 1.46497 * 109.46790 * 180.02562 * 10 9 7 12 12 C 1.34776 * 119.99828 * 179.97438 * 11 10 9 13 13 O 1.21600 * 120.00129 * 0.02562 * 12 11 10 14 14 C 1.47579 * 120.00407 * 179.97438 * 12 11 10 15 15 C 1.36471 * 125.92554 * 180.02562 * 14 12 11 16 16 N 1.36184 * 107.01906 * 179.97438 * 15 14 12 17 17 C 1.36675 * 132.45056 * 180.02562 * 16 15 14 18 18 C 1.35471 * 119.10251 * 179.97438 * 17 16 15 19 19 C 1.40303 * 119.36179 * 0.02562 * 18 17 16 20 20 N 1.31144 * 120.41003 * 0.02562 * 19 18 17 21 21 C 1.34281 * 120.94374 * 359.97438 * 20 19 18 22 22 N 1.32212 * 131.65397 * 180.02562 * 21 20 19 23 23 H 0.96992 * 120.00139 * 0.02562 * 1 2 3 24 24 H 1.09011 * 109.46660 * 60.00111 * 9 7 2 25 25 H 1.09001 * 109.46991 * 300.00903 * 9 7 2 26 26 H 1.08997 * 109.47162 * 60.00396 * 10 9 7 27 27 H 1.08996 * 109.46952 * 300.00289 * 10 9 7 28 28 H 0.96998 * 120.00536 * 0.02562 * 11 10 9 29 29 H 1.08007 * 126.49116 * 359.96106 * 15 14 12 30 30 H 1.08000 * 120.44961 * 0.02562 * 17 16 15 31 31 H 1.08004 * 120.32036 * 180.02562 * 18 17 16 32 32 H 1.07996 * 119.79608 * 180.27500 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0017 10 6 2.2453 -3.6622 0.0027 11 7 1.5127 -4.9308 0.0033 12 6 2.1866 -6.0980 0.0037 13 8 3.4026 -6.0981 0.0041 14 6 1.4488 -7.3761 0.0048 15 6 2.0055 -8.6221 0.0058 16 7 0.9792 -9.5173 0.0071 17 6 0.9469 -10.8836 0.0090 18 6 -0.2520 -11.5144 0.0106 19 6 -1.4302 -10.7525 0.0097 20 7 -1.3734 -9.4423 0.0069 21 6 -0.1929 -8.8023 0.0053 22 7 0.1088 -7.5151 0.0030 23 1 -0.4850 0.8400 -0.0004 24 1 0.6240 -2.5575 -0.8881 25 1 0.6246 -2.5563 0.8919 26 1 2.8719 -3.6037 0.8927 27 1 2.8719 -3.6052 -0.8872 28 1 0.5428 -4.9308 0.0026 29 1 3.0603 -8.8543 0.0053 30 1 1.8647 -11.4528 0.0100 31 1 -0.3005 -12.5933 0.0124 32 1 -2.3897 -11.2480 0.0154 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000544258796.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:54 Heat of formation + Delta-G solvation = 40.122792 kcal Electronic energy + Delta-G solvation = -17838.752635 eV Core-core repulsion = 14799.901564 eV Total energy + Delta-G solvation = -3038.851071 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.101 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -44.13423 -40.70263 -39.00132 -36.65689 -35.71647 -34.82265 -32.35708 -31.39373 -30.49262 -27.34954 -25.90208 -24.36561 -24.06889 -22.75950 -21.42069 -19.65680 -18.77381 -18.44501 -17.93819 -17.55629 -16.83577 -16.65300 -16.42701 -16.41528 -15.27908 -15.15762 -14.88981 -14.79943 -14.29508 -13.85807 -13.47606 -13.25250 -13.01391 -12.87608 -12.54745 -12.25829 -11.84746 -11.73900 -11.51845 -11.18226 -10.87327 -10.61258 -10.32024 -10.03286 -9.40513 -8.23537 -6.35677 -0.52612 -0.03407 0.86251 1.22680 1.41572 1.45352 1.53236 2.09770 2.20091 2.40928 2.52504 2.56661 3.10577 3.31844 3.49967 3.65822 3.95447 4.11555 4.31398 4.44028 4.46074 4.59111 4.70112 4.81187 5.07758 5.18467 5.20995 5.42926 5.52716 5.54027 5.76629 6.13194 6.29029 6.49438 6.76871 6.80437 7.07609 7.33727 8.88747 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.048494 B = 0.003375 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.250110 B = 8294.939098 C = 8851.742521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.003 3.997 3 Si 0.972 3.028 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.547 4.547 8 H 0.065 0.935 9 C 0.021 3.979 10 C 0.140 3.860 11 N -0.705 5.705 12 C 0.594 3.406 13 O -0.569 6.569 14 C -0.014 4.014 15 C 0.005 3.995 16 N -0.404 5.404 17 C 0.102 3.898 18 C -0.185 4.185 19 C 0.188 3.812 20 N -0.489 5.489 21 C 0.363 3.637 22 N -0.496 5.496 23 H 0.266 0.734 24 H 0.004 0.996 25 H 0.004 0.996 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.409 0.591 29 H 0.230 0.770 30 H 0.224 0.776 31 H 0.223 0.777 32 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.006 -30.225 0.039 30.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.796 3.204 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.191 1.191 7 C -0.586 4.586 8 H 0.083 0.917 9 C -0.016 4.016 10 C 0.017 3.983 11 N -0.353 5.353 12 C 0.380 3.620 13 O -0.449 6.449 14 C -0.146 4.146 15 C -0.131 4.131 16 N -0.081 5.081 17 C -0.026 4.026 18 C -0.207 4.207 19 C 0.002 3.998 20 N -0.203 5.203 21 C 0.013 3.987 22 N -0.221 5.221 23 H 0.075 0.925 24 H 0.022 0.978 25 H 0.022 0.978 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.245 0.755 29 H 0.246 0.754 30 H 0.241 0.759 31 H 0.239 0.761 32 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -0.446 -28.661 0.037 28.664 hybrid contribution 0.785 0.297 -0.001 0.839 sum 0.339 -28.363 0.035 28.365 Atomic orbital electron populations 1.70088 1.07820 1.28152 1.50869 1.25981 0.95819 1.03458 0.94287 0.85401 0.78181 0.77591 0.79277 1.19089 1.20649 1.19079 1.21440 0.93759 0.91567 1.51785 0.91679 1.19145 0.94282 0.92130 0.96077 1.21373 0.95000 0.81269 1.00638 1.46084 1.11360 1.05669 1.72203 1.17188 0.86055 0.82620 0.76174 1.90740 1.13453 1.87710 1.53042 1.20534 0.89652 0.94246 1.10165 1.22892 0.95042 0.86463 1.08703 1.44015 1.09073 1.08579 1.46420 1.23327 1.04490 0.78964 0.95845 1.22519 0.89728 1.05279 1.03127 1.24397 1.02666 0.86465 0.86299 1.68081 1.20556 1.13431 1.18220 1.22008 0.83443 0.88113 1.05164 1.70647 1.13487 1.14488 1.23455 0.92519 0.97780 0.97788 0.92500 0.92513 0.75533 0.75366 0.75946 0.76079 0.75808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.41 13.29 21.45 0.28 -57.13 16 2 C 0.00 0.18 5.46 84.66 0.46 0.64 16 3 Si 0.97 45.10 29.54 68.60 2.03 47.13 16 4 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 7 C -0.55 -32.03 9.11 25.60 0.23 -31.79 16 8 H 0.07 3.64 7.74 -2.91 -0.02 3.62 16 9 C 0.02 1.16 5.09 29.85 0.15 1.31 16 10 C 0.14 6.61 5.61 86.38 0.48 7.10 16 11 N -0.70 -30.14 5.55 -466.23 -2.59 -32.73 16 12 C 0.59 23.90 7.82 86.71 0.68 24.57 16 13 O -0.57 -24.64 16.87 -4.03 -0.07 -24.71 16 14 C -0.01 -0.48 6.94 40.75 0.28 -0.20 16 15 C 0.01 0.13 11.47 83.60 0.96 1.09 16 16 N -0.40 -8.20 2.93 -356.83 -1.05 -9.25 16 17 C 0.10 0.75 11.05 83.30 0.92 1.67 16 18 C -0.18 -0.50 10.06 22.13 0.22 -0.28 16 19 C 0.19 1.79 11.27 85.30 0.96 2.75 16 20 N -0.49 -11.64 10.48 -197.17 -2.07 -13.71 16 21 C 0.36 10.55 8.90 261.35 2.33 12.88 16 22 N -0.50 -18.09 11.01 -188.82 -2.08 -20.17 16 23 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 24 H 0.00 0.22 8.14 -2.38 -0.02 0.21 16 25 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 26 H 0.06 2.69 8.14 -2.39 -0.02 2.67 16 27 H 0.06 2.69 8.14 -2.39 -0.02 2.67 16 28 H 0.41 17.31 8.17 -92.71 -0.76 16.56 16 29 H 0.23 3.91 8.06 -2.91 -0.02 3.88 16 30 H 0.22 -0.57 8.06 -2.91 -0.02 -0.59 16 31 H 0.22 -1.82 8.06 -2.91 -0.02 -1.84 16 32 H 0.23 0.00 8.06 -2.91 -0.02 -0.02 16 Total: -1.00 -85.68 292.79 2.54 -83.13 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: 0.40 Total: 7.69 kcal Atomic # 6 Polarization: 12.05 SS G_CDS: 7.68 Total: 19.74 kcal Atomic # 7 Polarization: -125.49 SS G_CDS: -7.50 Total: -132.98 kcal Atomic # 8 Polarization: -24.64 SS G_CDS: -0.07 Total: -24.71 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -85.68 2.54 -83.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000544258796.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.256 kcal (2) G-P(sol) polarization free energy of solvation -85.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds