Wall clock time and date at job start Mon Mar 30 2020 05:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86799 * 119.99906 * 2 1 4 4 H 1.48500 * 109.47290 * 239.99982 * 3 2 1 5 5 H 1.48501 * 109.47124 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.47231 * 120.00210 * 3 2 1 7 7 C 1.39941 * 119.99974 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00000 * 197.85289 * 7 2 1 9 9 C 1.41399 * 120.00354 * 17.85842 * 7 2 1 10 10 C 1.40715 * 120.24276 * 24.38098 * 9 7 2 11 11 C 1.37616 * 119.74456 * 180.02562 * 10 9 7 12 12 C 1.38631 * 120.25062 * 0.02617 * 11 10 9 13 13 C 1.50697 * 119.75333 * 179.97438 * 12 11 10 14 14 N 1.46496 * 109.47278 * 89.99579 * 13 12 11 15 15 C 1.34772 * 120.00055 * 179.97438 * 14 13 12 16 16 O 1.21277 * 120.00194 * 0.02562 * 15 14 13 17 17 C 1.50706 * 119.99947 * 180.02562 * 15 14 13 18 18 N 1.46898 * 115.54867 * 350.58789 * 17 15 14 19 19 C 1.53002 * 117.51849 * 136.28527 * 17 15 14 20 20 C 1.52995 * 117.49822 * 204.91872 * 17 15 14 21 21 C 1.38635 * 120.49938 * 0.25194 * 12 11 10 22 22 C 1.37625 * 120.24989 * 359.44762 * 21 12 11 23 23 H 0.96997 * 119.99648 * 0.02562 * 1 2 3 24 24 H 1.08003 * 120.12727 * 0.02562 * 10 9 7 25 25 H 1.08001 * 119.87051 * 180.02562 * 11 10 9 26 26 H 1.09007 * 109.46702 * 329.99964 * 13 12 11 27 27 H 1.09000 * 109.47623 * 210.00589 * 13 12 11 28 28 H 0.97002 * 120.00176 * 0.02562 * 14 13 12 29 29 H 1.00902 * 111.00231 * 34.33034 * 18 17 15 30 30 H 1.00897 * 111.00118 * 158.28692 * 18 17 15 31 31 H 1.09000 * 117.50164 * 214.97057 * 19 17 15 32 32 H 1.09004 * 117.49972 * 359.97438 * 19 17 15 33 33 H 1.09001 * 117.50201 * 359.96950 * 20 17 15 34 34 H 1.08998 * 117.50127 * 144.98055 * 20 17 15 35 35 H 1.08005 * 119.87672 * 179.70314 * 21 12 11 36 36 H 1.07994 * 120.12815 * 180.27142 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0960 1.6965 -1.2125 5 1 1.2772 2.7464 -0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0079 -1.2119 0.0005 8 1 3.0490 -1.2343 0.2873 9 6 1.3521 -2.4072 -0.3744 10 6 0.2209 -2.3627 -1.2101 11 6 -0.4098 -3.5323 -1.5682 12 6 0.0650 -4.7509 -1.1085 13 6 -0.6346 -6.0247 -1.5072 14 7 -0.0455 -6.5382 -2.7463 15 6 -0.5148 -7.6764 -3.2945 16 8 -1.4252 -8.2753 -2.7622 17 6 0.0916 -8.2049 -4.5689 18 7 1.0331 -7.3021 -5.2445 19 6 0.3727 -9.7068 -4.6482 20 6 -0.7823 -9.1012 -5.4484 21 6 1.1753 -4.8062 -0.2801 22 6 1.8255 -3.6498 0.0859 23 1 -0.4849 0.8400 -0.0004 24 1 -0.1510 -1.4144 -1.5691 25 1 -1.2780 -3.5005 -2.2099 26 1 -1.6942 -5.8231 -1.6650 27 1 -0.5196 -6.7654 -0.7159 28 1 0.6829 -6.0594 -3.1719 29 1 1.5572 -6.7591 -4.5748 30 1 1.6501 -7.8150 -5.8563 31 1 1.2561 -10.0250 -5.2018 32 1 0.1193 -10.3129 -3.7784 33 1 -1.7958 -9.3091 -5.1052 34 1 -0.6590 -9.0209 -6.5284 35 1 1.5338 -5.7607 0.0761 36 1 2.6928 -3.6955 0.7278 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563170797.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:51 Heat of formation + Delta-G solvation = 0.445955 kcal Electronic energy + Delta-G solvation = -18405.539244 eV Core-core repulsion = 15468.508000 eV Total energy + Delta-G solvation = -2937.031244 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.03087 -37.84901 -36.78298 -34.84477 -33.53025 -31.23756 -30.21599 -29.37979 -27.13509 -24.43881 -22.74468 -22.58254 -21.09971 -20.17603 -19.45769 -17.75741 -17.40918 -16.22201 -15.46391 -15.02804 -14.92847 -14.73029 -14.20234 -14.02838 -13.67116 -13.60261 -12.93286 -12.57209 -12.14550 -12.04795 -11.81459 -11.61416 -11.48789 -11.22441 -11.13638 -10.97693 -10.63973 -10.58746 -9.83464 -9.66036 -9.50015 -9.23456 -8.80997 -8.66382 -7.59331 -7.47893 -6.88359 -4.48435 2.54153 2.55032 2.95919 3.00208 3.01242 3.05727 3.52520 3.83991 3.84091 4.01765 4.49565 4.56585 4.78740 4.83976 5.41787 5.51882 5.57273 5.73984 5.79051 5.87860 5.97492 6.21670 6.25027 6.33537 6.63154 6.79059 6.84836 6.95921 7.04166 7.16125 7.24543 7.49025 7.66594 7.86882 7.93320 7.99548 8.17301 8.40216 8.51883 8.76721 8.84559 10.05639 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.040500 B = 0.003738 C = 0.003667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.191286 B = 7488.717475 C = 7634.722750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.076 3.924 3 Si 0.910 3.090 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.265 1.265 7 C -0.459 4.459 8 H 0.079 0.921 9 C 0.118 3.882 10 C -0.169 4.169 11 C -0.079 4.079 12 C -0.247 4.247 13 C 0.184 3.816 14 N -0.709 5.709 15 C 0.545 3.455 16 O -0.548 6.548 17 C 0.021 3.979 18 N -0.803 5.803 19 C -0.188 4.188 20 C -0.138 4.138 21 C -0.070 4.070 22 C -0.230 4.230 23 H 0.283 0.717 24 H 0.119 0.881 25 H 0.088 0.912 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.400 0.600 29 H 0.348 0.652 30 H 0.349 0.651 31 H 0.100 0.900 32 H 0.103 0.897 33 H 0.108 0.892 34 H 0.103 0.897 35 H 0.087 0.913 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.519 -9.482 -7.853 12.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.143 4.143 3 Si 0.734 3.266 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.488 4.488 8 H 0.097 0.903 9 C 0.115 3.885 10 C -0.189 4.189 11 C -0.098 4.098 12 C -0.249 4.249 13 C 0.062 3.938 14 N -0.360 5.360 15 C 0.329 3.671 16 O -0.426 6.426 17 C -0.076 4.076 18 N -0.335 5.335 19 C -0.228 4.228 20 C -0.176 4.176 21 C -0.089 4.089 22 C -0.250 4.250 23 H 0.094 0.906 24 H 0.137 0.863 25 H 0.107 0.893 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.235 0.765 29 H 0.163 0.837 30 H 0.163 0.837 31 H 0.119 0.881 32 H 0.121 0.879 33 H 0.126 0.874 34 H 0.121 0.879 35 H 0.106 0.894 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.006 -9.351 -7.729 12.173 hybrid contribution 1.447 0.554 0.331 1.584 sum 2.452 -8.797 -7.397 11.752 Atomic orbital electron populations 1.69814 1.07666 1.29636 1.33936 1.25956 0.94750 1.01498 0.92104 0.86337 0.80170 0.80010 0.80079 1.18706 1.20229 1.18917 1.19638 0.98233 0.91317 1.39609 0.90287 1.17665 0.90855 0.92026 0.87967 1.21317 0.99446 0.96791 1.01301 1.20568 0.98056 0.92567 0.98646 1.18957 1.02730 0.92559 1.10682 1.19987 0.96176 0.93488 0.84120 1.46470 1.38112 1.24482 1.26906 1.19273 0.82794 0.81098 0.83894 1.90682 1.29765 1.59007 1.63151 1.21499 1.01199 0.89485 0.95424 1.58541 1.23957 1.27122 1.23856 1.23615 1.00801 0.94716 1.03708 1.23109 0.96844 0.99769 0.97907 1.20401 0.94937 0.96490 0.97050 1.20955 1.03927 0.92847 1.07260 0.90571 0.86349 0.89333 0.92184 0.92331 0.76455 0.83681 0.83690 0.88121 0.87879 0.87366 0.87853 0.89444 0.88896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.65 10.95 55.55 0.61 -19.04 16 2 C 0.08 1.83 5.14 -17.34 -0.09 1.75 16 3 Si 0.91 17.93 29.59 -169.99 -5.03 12.90 16 4 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 5 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 6 H -0.26 -5.16 7.11 56.52 0.40 -4.75 16 7 C -0.46 -11.69 9.05 -37.74 -0.34 -12.03 16 8 H 0.08 1.92 7.91 -52.48 -0.41 1.51 16 9 C 0.12 3.00 5.58 -106.82 -0.60 2.40 16 10 C -0.17 -4.21 8.70 -38.87 -0.34 -4.54 16 11 C -0.08 -1.77 9.67 -39.66 -0.38 -2.15 16 12 C -0.25 -5.10 5.27 -104.33 -0.55 -5.65 16 13 C 0.18 3.35 5.79 -5.20 -0.03 3.32 16 14 N -0.71 -11.33 5.51 -61.47 -0.34 -11.67 16 15 C 0.54 8.76 7.57 -10.98 -0.08 8.67 16 16 O -0.55 -10.51 16.43 5.56 0.09 -10.41 16 17 C 0.02 0.26 3.27 -132.75 -0.43 -0.18 16 18 N -0.80 -8.31 9.72 -0.19 0.00 -8.31 16 19 C -0.19 -1.92 9.84 -26.73 -0.26 -2.18 16 20 C -0.14 -1.51 9.98 -26.73 -0.27 -1.78 16 21 C -0.07 -1.48 9.67 -39.66 -0.38 -1.86 16 22 C -0.23 -5.37 9.80 -38.87 -0.38 -5.75 16 23 H 0.28 6.45 8.30 -40.82 -0.34 6.11 16 24 H 0.12 3.06 6.16 -52.48 -0.32 2.73 16 25 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 26 H 0.06 1.13 8.08 -51.92 -0.42 0.71 16 27 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 28 H 0.40 5.84 6.46 -40.82 -0.26 5.58 16 29 H 0.35 3.48 7.06 -39.29 -0.28 3.21 16 30 H 0.35 2.73 8.78 -39.29 -0.35 2.39 16 31 H 0.10 0.78 8.09 -51.93 -0.42 0.36 16 32 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.11 1.30 7.89 -51.93 -0.41 0.89 16 34 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.09 1.64 8.06 -52.48 -0.42 1.22 16 36 H 0.09 2.05 8.06 -52.49 -0.42 1.63 16 LS Contribution 310.09 15.07 4.67 4.67 Total: -1.00 -27.94 310.09 -8.68 -36.62 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: -4.54 Total: 15.23 kcal Atomic # 6 Polarization: -15.85 SS G_CDS: -4.14 Total: -19.99 kcal Atomic # 7 Polarization: -39.28 SS G_CDS: 0.27 Total: -39.01 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.09 Total: -10.41 kcal Atomic # 14 Polarization: 17.93 SS G_CDS: -5.03 Total: 12.90 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -27.94 -8.68 -36.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563170797.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.062 kcal (2) G-P(sol) polarization free energy of solvation -27.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds