Wall clock time and date at job start Mon Mar 30 2020 05:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86799 * 119.99906 * 2 1 4 4 H 1.48500 * 109.47290 * 239.99982 * 3 2 1 5 5 H 1.48501 * 109.47124 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.47231 * 120.00210 * 3 2 1 7 7 C 1.39941 * 119.99974 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00000 * 197.85289 * 7 2 1 9 9 C 1.41399 * 120.00354 * 17.85842 * 7 2 1 10 10 C 1.40715 * 120.24276 * 24.38098 * 9 7 2 11 11 C 1.37616 * 119.74456 * 180.02562 * 10 9 7 12 12 C 1.38631 * 120.25062 * 0.02617 * 11 10 9 13 13 C 1.50697 * 119.75333 * 179.97438 * 12 11 10 14 14 N 1.46496 * 109.47278 * 89.99579 * 13 12 11 15 15 C 1.34772 * 120.00055 * 179.97438 * 14 13 12 16 16 O 1.21277 * 120.00194 * 0.02562 * 15 14 13 17 17 C 1.50706 * 119.99947 * 180.02562 * 15 14 13 18 18 N 1.46898 * 115.54867 * 350.58789 * 17 15 14 19 19 C 1.53002 * 117.51849 * 136.28527 * 17 15 14 20 20 C 1.52995 * 117.49822 * 204.91872 * 17 15 14 21 21 C 1.38635 * 120.49938 * 0.25194 * 12 11 10 22 22 C 1.37625 * 120.24989 * 359.44762 * 21 12 11 23 23 H 0.96997 * 119.99648 * 0.02562 * 1 2 3 24 24 H 1.08003 * 120.12727 * 0.02562 * 10 9 7 25 25 H 1.08001 * 119.87051 * 180.02562 * 11 10 9 26 26 H 1.09007 * 109.46702 * 329.99964 * 13 12 11 27 27 H 1.09000 * 109.47623 * 210.00589 * 13 12 11 28 28 H 0.97002 * 120.00176 * 0.02562 * 14 13 12 29 29 H 1.00902 * 111.00231 * 34.33034 * 18 17 15 30 30 H 1.00897 * 111.00118 * 158.28692 * 18 17 15 31 31 H 1.09000 * 117.50164 * 214.97057 * 19 17 15 32 32 H 1.09004 * 117.49972 * 359.97438 * 19 17 15 33 33 H 1.09001 * 117.50201 * 359.96950 * 20 17 15 34 34 H 1.08998 * 117.50127 * 144.98055 * 20 17 15 35 35 H 1.08005 * 119.87672 * 179.70314 * 21 12 11 36 36 H 1.07994 * 120.12815 * 180.27142 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0960 1.6965 -1.2125 5 1 1.2772 2.7464 -0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0079 -1.2119 0.0005 8 1 3.0490 -1.2343 0.2873 9 6 1.3521 -2.4072 -0.3744 10 6 0.2209 -2.3627 -1.2101 11 6 -0.4098 -3.5323 -1.5682 12 6 0.0650 -4.7509 -1.1085 13 6 -0.6346 -6.0247 -1.5072 14 7 -0.0455 -6.5382 -2.7463 15 6 -0.5148 -7.6764 -3.2945 16 8 -1.4252 -8.2753 -2.7622 17 6 0.0916 -8.2049 -4.5689 18 7 1.0331 -7.3021 -5.2445 19 6 0.3727 -9.7068 -4.6482 20 6 -0.7823 -9.1012 -5.4484 21 6 1.1753 -4.8062 -0.2801 22 6 1.8255 -3.6498 0.0859 23 1 -0.4849 0.8400 -0.0004 24 1 -0.1510 -1.4144 -1.5691 25 1 -1.2780 -3.5005 -2.2099 26 1 -1.6942 -5.8231 -1.6650 27 1 -0.5196 -6.7654 -0.7159 28 1 0.6829 -6.0594 -3.1719 29 1 1.5572 -6.7591 -4.5748 30 1 1.6501 -7.8150 -5.8563 31 1 1.2561 -10.0250 -5.2018 32 1 0.1193 -10.3129 -3.7784 33 1 -1.7958 -9.3091 -5.1052 34 1 -0.6590 -9.0209 -6.5284 35 1 1.5338 -5.7607 0.0761 36 1 2.6928 -3.6955 0.7278 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000563170797.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:51 Heat of formation + Delta-G solvation = -17.831032 kcal Electronic energy + Delta-G solvation = -18406.331794 eV Core-core repulsion = 15468.508000 eV Total energy + Delta-G solvation = -2937.823794 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.24075 -39.55247 -37.88676 -36.39671 -35.18279 -32.42962 -31.61791 -31.17942 -28.77653 -25.99577 -24.05325 -23.43647 -22.91339 -21.86552 -20.70937 -19.24650 -18.79955 -17.42859 -17.18002 -16.35642 -16.25627 -15.84347 -15.69079 -15.33176 -15.19957 -15.06130 -14.26710 -14.00887 -13.85233 -13.65864 -13.33877 -12.95903 -12.76943 -12.71371 -12.42400 -12.34266 -12.18457 -11.89457 -11.52499 -11.31523 -11.08173 -10.93274 -10.12993 -9.54963 -9.41343 -9.30345 -8.67566 -6.37968 0.82684 1.12203 1.36485 1.38954 1.48306 1.51874 2.18408 2.21535 2.73896 2.91413 3.14534 3.60151 3.71204 3.83346 3.95810 4.14798 4.27694 4.50028 4.62418 4.63875 4.66611 4.78626 4.91979 5.03381 5.13606 5.16075 5.32566 5.37590 5.42547 5.67008 5.82585 5.91147 6.07344 6.18325 6.34502 6.37191 6.57310 6.66565 6.90636 6.99381 7.13405 8.28855 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.040500 B = 0.003738 C = 0.003667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.191286 B = 7488.717475 C = 7634.722750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.036 3.964 3 Si 0.982 3.018 4 H -0.259 1.259 5 H -0.269 1.269 6 H -0.259 1.259 7 C -0.497 4.497 8 H 0.079 0.921 9 C 0.088 3.912 10 C -0.191 4.191 11 C -0.082 4.082 12 C -0.230 4.230 13 C 0.192 3.808 14 N -0.704 5.704 15 C 0.540 3.460 16 O -0.584 6.584 17 C 0.008 3.992 18 N -0.802 5.802 19 C -0.169 4.169 20 C -0.136 4.136 21 C -0.067 4.067 22 C -0.242 4.242 23 H 0.289 0.711 24 H 0.101 0.899 25 H 0.101 0.899 26 H 0.053 0.947 27 H 0.063 0.937 28 H 0.408 0.592 29 H 0.349 0.651 30 H 0.365 0.635 31 H 0.133 0.867 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.126 0.874 35 H 0.117 0.883 36 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.511 -10.486 -8.957 14.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.180 4.180 3 Si 0.803 3.197 4 H -0.183 1.183 5 H -0.193 1.193 6 H -0.183 1.183 7 C -0.526 4.526 8 H 0.097 0.903 9 C 0.085 3.915 10 C -0.211 4.211 11 C -0.101 4.101 12 C -0.232 4.232 13 C 0.070 3.930 14 N -0.355 5.355 15 C 0.327 3.673 16 O -0.464 6.464 17 C -0.089 4.089 18 N -0.336 5.336 19 C -0.209 4.209 20 C -0.175 4.175 21 C -0.085 4.085 22 C -0.262 4.262 23 H 0.100 0.900 24 H 0.119 0.881 25 H 0.120 0.880 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.245 0.755 29 H 0.164 0.836 30 H 0.182 0.818 31 H 0.151 0.849 32 H 0.110 0.890 33 H 0.111 0.889 34 H 0.144 0.856 35 H 0.135 0.865 36 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 2.019 -10.372 -8.853 13.785 hybrid contribution 1.073 0.695 0.652 1.435 sum 3.092 -9.676 -8.201 13.056 Atomic orbital electron populations 1.69869 1.09092 1.30819 1.34806 1.26784 0.95452 1.04629 0.91098 0.85248 0.78793 0.75542 0.80146 1.18337 1.19326 1.18330 1.19902 0.98560 0.92529 1.41593 0.90301 1.17995 0.91582 0.93134 0.88749 1.21261 1.00346 0.96975 1.02512 1.20743 0.98227 0.92495 0.98645 1.19158 1.01948 0.92948 1.09132 1.19768 0.95598 0.92343 0.85330 1.46255 1.38265 1.24779 1.26236 1.19888 0.82209 0.80411 0.84784 1.90664 1.31374 1.59909 1.64463 1.21343 1.02545 0.90793 0.94209 1.58541 1.24245 1.27015 1.23838 1.23708 1.01526 0.92490 1.03209 1.23197 0.96301 0.98954 0.99017 1.20676 0.94493 0.97037 0.96342 1.21154 1.04511 0.92961 1.07565 0.89989 0.88144 0.88050 0.92822 0.91904 0.75504 0.83562 0.81845 0.84921 0.89031 0.88944 0.85615 0.86537 0.88183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.09 10.95 21.83 0.24 -41.86 16 2 C 0.04 1.78 5.14 85.26 0.44 2.21 16 3 Si 0.98 37.00 29.59 68.60 2.03 39.03 16 4 H -0.26 -9.52 7.11 99.48 0.71 -8.82 16 5 H -0.27 -9.64 7.11 99.48 0.71 -8.93 16 6 H -0.26 -9.44 7.11 99.48 0.71 -8.74 16 7 C -0.50 -25.98 9.05 23.46 0.21 -25.77 16 8 H 0.08 3.95 7.91 -2.91 -0.02 3.92 16 9 C 0.09 4.58 5.58 -21.29 -0.12 4.46 16 10 C -0.19 -9.77 8.70 22.73 0.20 -9.57 16 11 C -0.08 -3.67 9.67 22.22 0.21 -3.46 16 12 C -0.23 -9.25 5.27 -19.68 -0.10 -9.35 16 13 C 0.19 6.74 5.79 85.63 0.50 7.23 16 14 N -0.70 -21.42 5.51 -466.80 -2.57 -23.99 16 15 C 0.54 16.62 7.57 87.66 0.66 17.29 16 16 O -0.58 -21.97 16.43 -3.02 -0.05 -22.02 16 17 C 0.01 0.18 3.27 2.78 0.01 0.19 16 18 N -0.80 -14.43 9.72 -154.52 -1.50 -15.94 16 19 C -0.17 -2.96 9.84 30.60 0.30 -2.66 16 20 C -0.14 -2.66 9.98 30.60 0.31 -2.36 16 21 C -0.07 -2.74 9.67 22.22 0.21 -2.52 16 22 C -0.24 -11.31 9.80 22.73 0.22 -11.09 16 23 H 0.29 13.46 8.30 -92.71 -0.77 12.69 16 24 H 0.10 5.41 6.16 -2.91 -0.02 5.40 16 25 H 0.10 4.18 8.06 -2.91 -0.02 4.16 16 26 H 0.05 1.97 8.08 -2.38 -0.02 1.95 16 27 H 0.06 2.18 8.08 -2.39 -0.02 2.16 16 28 H 0.41 11.20 6.46 -92.71 -0.60 10.60 16 29 H 0.35 6.16 7.06 -89.69 -0.63 5.53 16 30 H 0.37 4.47 8.78 -89.70 -0.79 3.68 16 31 H 0.13 1.48 8.09 -2.39 -0.02 1.46 16 32 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.09 2.12 7.89 -2.39 -0.02 2.10 16 34 H 0.13 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.12 4.07 8.06 -2.91 -0.02 4.05 16 36 H 0.10 4.41 8.06 -2.91 -0.02 4.39 16 Total: -1.00 -61.17 310.09 0.31 -60.86 By element: Atomic # 1 Polarization: 40.18 SS G_CDS: -0.89 Total: 39.28 kcal Atomic # 6 Polarization: -38.43 SS G_CDS: 3.05 Total: -35.38 kcal Atomic # 7 Polarization: -77.95 SS G_CDS: -3.83 Total: -81.78 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: -0.05 Total: -22.02 kcal Atomic # 14 Polarization: 37.00 SS G_CDS: 2.03 Total: 39.03 kcal Total: -61.17 0.31 -60.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563170797.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.030 kcal (2) G-P(sol) polarization free energy of solvation -61.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds