Wall clock time and date at job start Mon Mar 30 2020 04:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46504 * 120.00031 * 2 1 4 4 C 1.53000 * 117.49545 * 351.37664 * 3 2 1 5 5 C 1.52997 * 60.00347 * 107.48990 * 4 3 2 6 6 S 1.65596 * 120.00176 * 179.97438 * 2 1 3 7 7 O 1.42098 * 106.40033 * 23.54146 * 6 2 1 8 8 O 1.42095 * 106.40372 * 156.46438 * 6 2 1 9 9 N 1.65605 * 107.21759 * 270.00106 * 6 2 1 10 10 C 1.47058 * 136.05967 * 269.62683 * 9 6 2 11 11 C 1.53758 * 87.88993 * 152.96420 * 10 9 6 12 12 C 1.50703 * 114.26557 * 139.79330 * 11 10 9 13 13 H 1.07999 * 119.99528 * 266.47007 * 12 11 10 14 14 C 1.37870 * 119.99859 * 86.48174 * 12 11 10 15 15 N 1.31512 * 120.00178 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99794 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47543 * 89.99335 * 16 14 12 18 18 H 1.48503 * 109.47014 * 209.99762 * 16 14 12 19 19 H 1.48507 * 109.47096 * 329.99396 * 16 14 12 20 20 C 1.47065 * 136.05375 * 90.00172 * 9 6 2 21 21 H 1.09003 * 109.46875 * 90.00427 * 1 2 3 22 22 H 1.09000 * 109.47614 * 210.00183 * 1 2 3 23 23 H 1.08999 * 109.47454 * 330.00779 * 1 2 3 24 24 H 1.08990 * 115.56282 * 205.68888 * 3 2 1 25 25 H 1.09002 * 117.49696 * 214.98203 * 4 3 2 26 26 H 1.09002 * 117.50343 * 0.02562 * 4 3 2 27 27 H 1.08999 * 117.49685 * 252.51237 * 5 4 3 28 28 H 1.08997 * 117.50044 * 107.48590 * 5 4 3 29 29 H 1.08997 * 113.47327 * 267.69780 * 10 9 6 30 30 H 1.08999 * 113.46867 * 38.13922 * 10 9 6 31 31 H 1.09005 * 114.39673 * 272.68045 * 11 10 9 32 32 H 0.97008 * 119.99575 * 180.02562 * 15 14 12 33 33 H 1.09000 * 113.47192 * 321.86299 * 20 9 6 34 34 H 1.08998 * 113.46926 * 92.24662 * 20 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 1.3886 2.5514 -0.2035 5 6 1.9629 2.2199 1.1753 6 16 2.2930 -1.4341 0.0006 7 8 1.4113 -2.4067 -0.5434 8 8 3.5759 -1.1569 -0.5438 9 7 2.5381 -1.8579 1.5827 10 6 3.5817 -1.6242 2.5921 11 6 2.4959 -1.7836 3.6690 12 6 2.9383 -2.5562 4.8849 13 1 2.7625 -3.6203 4.9420 14 6 3.5672 -1.9046 5.9245 15 7 3.7815 -0.6089 5.8549 16 14 4.1163 -2.8625 7.4313 17 1 5.5031 -3.3531 7.2280 18 1 4.0740 -1.9774 8.6230 19 1 3.2080 -4.0186 7.6410 20 6 1.8109 -2.6392 2.5944 21 1 -0.3633 -0.0001 -1.0277 22 1 -0.3634 -0.8899 0.5138 23 1 -0.3634 0.8900 0.5137 24 1 3.2000 1.2330 -0.4262 25 1 1.8591 3.3595 -0.7637 26 1 0.3114 2.4514 -0.3369 27 1 1.2637 1.9017 1.9485 28 1 2.8112 2.8099 1.5223 29 1 4.3402 -2.4063 2.6215 30 1 4.0096 -0.6226 2.5501 31 1 1.9651 -0.8633 3.9130 32 1 4.2244 -0.1506 6.5863 33 1 0.7303 -2.5026 2.5544 34 1 2.1020 -3.6892 2.6237 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594827139.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:14 Heat of formation + Delta-G solvation = -7.911080 kcal Electronic energy + Delta-G solvation = -18343.316890 eV Core-core repulsion = 15405.534115 eV Total energy + Delta-G solvation = -2937.782775 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 260.098 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.19619 -38.10232 -36.85079 -35.46578 -33.09701 -32.61384 -28.28478 -26.64397 -24.92527 -24.51033 -22.31728 -21.44826 -19.77018 -18.50097 -17.70356 -16.84640 -16.44902 -16.22038 -15.04681 -14.75287 -14.51375 -14.10905 -13.72180 -13.02411 -12.79361 -12.66993 -12.45782 -11.83573 -11.74089 -11.69050 -11.58501 -11.47784 -11.40278 -11.28795 -11.10687 -10.98836 -10.58180 -10.36325 -10.27089 -9.25898 -9.09261 -8.67874 -8.55849 -8.20344 -6.15313 -4.19813 0.90230 3.17827 3.25599 3.33096 3.36087 3.83149 3.90323 4.35271 4.49658 4.83483 4.93788 5.00644 5.05131 5.16809 5.46625 5.59385 5.64717 5.76847 5.84237 6.01832 6.14135 6.17674 6.24104 6.28309 6.37448 6.44538 6.67786 6.83596 6.90755 7.52406 7.65323 7.82720 8.23689 8.83563 9.46137 10.94207 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.027083 B = 0.006421 C = 0.005732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.602124 B = 4359.856549 C = 4883.320974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.982 5.982 3 C 0.080 3.920 4 C -0.183 4.183 5 C -0.187 4.187 6 S 2.807 3.193 7 O -0.986 6.986 8 O -0.984 6.984 9 N -1.054 6.054 10 C 0.133 3.867 11 C 0.037 3.963 12 C -0.517 4.517 13 H 0.063 0.937 14 C 0.068 3.932 15 N -0.886 5.886 16 Si 0.894 3.106 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.273 1.273 20 C 0.126 3.874 21 H 0.055 0.945 22 H 0.071 0.929 23 H 0.071 0.929 24 H 0.138 0.862 25 H 0.100 0.900 26 H 0.098 0.902 27 H 0.101 0.899 28 H 0.102 0.898 29 H 0.070 0.930 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.263 0.737 33 H 0.051 0.949 34 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.270 4.983 -8.520 11.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.818 5.818 3 C -0.028 4.028 4 C -0.222 4.222 5 C -0.227 4.227 6 S 2.819 3.181 7 O -0.970 6.970 8 O -0.968 6.968 9 N -0.898 5.898 10 C 0.008 3.992 11 C 0.016 3.984 12 C -0.556 4.556 13 H 0.081 0.919 14 C -0.135 4.135 15 N -0.523 5.523 16 Si 0.722 3.278 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.197 1.197 20 C 0.001 3.999 21 H 0.074 0.926 22 H 0.090 0.910 23 H 0.089 0.911 24 H 0.156 0.844 25 H 0.118 0.882 26 H 0.117 0.883 27 H 0.119 0.881 28 H 0.121 0.879 29 H 0.088 0.912 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.973 4.687 -9.489 11.694 hybrid contribution 0.214 -0.138 1.067 1.097 sum -4.759 4.549 -8.422 10.690 Atomic orbital electron populations 1.21410 0.78878 1.03092 1.01725 1.57586 1.14729 1.20779 1.88744 1.21505 0.96906 0.80689 1.03658 1.23294 1.00243 0.98027 1.00649 1.23403 1.04111 1.03190 0.91950 1.01025 0.72626 0.72284 0.72141 1.93556 1.67644 1.58533 1.77293 1.93540 1.40649 1.85397 1.77209 1.60264 1.35570 1.65815 1.28111 1.23027 0.92163 0.99586 0.84461 1.20492 0.91801 0.95695 0.90407 1.20996 1.38762 0.94703 1.01140 0.91904 1.25019 0.95417 0.94826 0.98276 1.69951 1.41584 1.08007 1.32728 0.86565 0.79161 0.79872 0.82226 1.20551 1.21219 1.19749 1.22786 0.95142 0.96034 0.85938 0.92619 0.91012 0.91056 0.84407 0.88211 0.88349 0.88055 0.87922 0.91192 0.92512 0.91495 0.92732 0.93013 0.91012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.18 9.53 59.85 0.57 1.75 16 2 N -0.98 -14.94 3.58 -114.61 -0.41 -15.35 16 3 C 0.08 1.10 6.40 -67.93 -0.43 0.67 16 4 C -0.18 -1.96 9.72 -26.73 -0.26 -2.22 16 5 C -0.19 -2.38 10.13 -26.73 -0.27 -2.65 16 6 S 2.81 52.27 6.65 -107.50 -0.71 51.55 16 7 O -0.99 -20.00 17.21 -57.17 -0.98 -20.98 16 8 O -0.98 -20.45 16.92 -57.17 -0.97 -21.42 16 9 N -1.05 -20.84 4.29 -125.05 -0.54 -21.38 16 10 C 0.13 2.89 8.31 -8.38 -0.07 2.82 16 11 C 0.04 0.85 3.79 -91.12 -0.35 0.50 16 12 C -0.52 -13.07 8.83 -34.44 -0.30 -13.37 16 13 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 14 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 15 N -0.89 -23.91 13.26 55.43 0.74 -23.17 16 16 Si 0.89 20.04 29.54 -169.99 -5.02 15.02 16 17 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 18 H -0.29 -6.43 7.11 56.52 0.40 -6.02 16 19 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 20 C 0.13 2.51 8.29 -8.51 -0.07 2.43 16 21 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 22 H 0.07 0.91 7.79 -51.93 -0.40 0.51 16 23 H 0.07 0.75 6.33 -51.93 -0.33 0.42 16 24 H 0.14 1.95 7.37 -51.93 -0.38 1.57 16 25 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.10 0.96 6.46 -51.93 -0.34 0.62 16 27 H 0.10 1.37 8.12 -51.93 -0.42 0.95 16 28 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.07 1.53 8.10 -51.93 -0.42 1.11 16 30 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 31 H 0.07 1.63 8.11 -51.93 -0.42 1.21 16 32 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 33 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.07 1.39 8.10 -51.93 -0.42 0.97 16 LS Contribution 300.44 15.07 4.53 4.53 Total: -1.00 -29.89 300.44 -9.45 -39.34 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -4.79 Total: 0.25 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: -1.28 Total: -8.40 kcal Atomic # 7 Polarization: -59.69 SS G_CDS: -0.21 Total: -59.90 kcal Atomic # 8 Polarization: -40.44 SS G_CDS: -1.95 Total: -42.39 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Atomic # 16 Polarization: 52.27 SS G_CDS: -0.71 Total: 51.55 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.89 -9.45 -39.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594827139.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.427 kcal (2) G-P(sol) polarization free energy of solvation -29.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds