Wall clock time and date at job start Mon Mar 30 2020 04:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46504 * 120.00031 * 2 1 4 4 C 1.53000 * 117.49545 * 351.37664 * 3 2 1 5 5 C 1.52997 * 60.00347 * 107.48990 * 4 3 2 6 6 S 1.65596 * 120.00176 * 179.97438 * 2 1 3 7 7 O 1.42098 * 106.40033 * 23.54146 * 6 2 1 8 8 O 1.42095 * 106.40372 * 156.46438 * 6 2 1 9 9 N 1.65605 * 107.21759 * 270.00106 * 6 2 1 10 10 C 1.47058 * 136.05967 * 269.62683 * 9 6 2 11 11 C 1.53758 * 87.88993 * 152.96420 * 10 9 6 12 12 C 1.50703 * 114.26557 * 139.79330 * 11 10 9 13 13 H 1.07999 * 119.99528 * 266.47007 * 12 11 10 14 14 C 1.37870 * 119.99859 * 86.48174 * 12 11 10 15 15 N 1.31512 * 120.00178 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99794 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47543 * 89.99335 * 16 14 12 18 18 H 1.48503 * 109.47014 * 209.99762 * 16 14 12 19 19 H 1.48507 * 109.47096 * 329.99396 * 16 14 12 20 20 C 1.47065 * 136.05375 * 90.00172 * 9 6 2 21 21 H 1.09003 * 109.46875 * 90.00427 * 1 2 3 22 22 H 1.09000 * 109.47614 * 210.00183 * 1 2 3 23 23 H 1.08999 * 109.47454 * 330.00779 * 1 2 3 24 24 H 1.08990 * 115.56282 * 205.68888 * 3 2 1 25 25 H 1.09002 * 117.49696 * 214.98203 * 4 3 2 26 26 H 1.09002 * 117.50343 * 0.02562 * 4 3 2 27 27 H 1.08999 * 117.49685 * 252.51237 * 5 4 3 28 28 H 1.08997 * 117.50044 * 107.48590 * 5 4 3 29 29 H 1.08997 * 113.47327 * 267.69780 * 10 9 6 30 30 H 1.08999 * 113.46867 * 38.13922 * 10 9 6 31 31 H 1.09005 * 114.39673 * 272.68045 * 11 10 9 32 32 H 0.97008 * 119.99575 * 180.02562 * 15 14 12 33 33 H 1.09000 * 113.47192 * 321.86299 * 20 9 6 34 34 H 1.08998 * 113.46926 * 92.24662 * 20 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 1.3886 2.5514 -0.2035 5 6 1.9629 2.2199 1.1753 6 16 2.2930 -1.4341 0.0006 7 8 1.4113 -2.4067 -0.5434 8 8 3.5759 -1.1569 -0.5438 9 7 2.5381 -1.8579 1.5827 10 6 3.5817 -1.6242 2.5921 11 6 2.4959 -1.7836 3.6690 12 6 2.9383 -2.5562 4.8849 13 1 2.7625 -3.6203 4.9420 14 6 3.5672 -1.9046 5.9245 15 7 3.7815 -0.6089 5.8549 16 14 4.1163 -2.8625 7.4313 17 1 5.5031 -3.3531 7.2280 18 1 4.0740 -1.9774 8.6230 19 1 3.2080 -4.0186 7.6410 20 6 1.8109 -2.6392 2.5944 21 1 -0.3633 -0.0001 -1.0277 22 1 -0.3634 -0.8899 0.5138 23 1 -0.3634 0.8900 0.5137 24 1 3.2000 1.2330 -0.4262 25 1 1.8591 3.3595 -0.7637 26 1 0.3114 2.4514 -0.3369 27 1 1.2637 1.9017 1.9485 28 1 2.8112 2.8099 1.5223 29 1 4.3402 -2.4063 2.6215 30 1 4.0096 -0.6226 2.5501 31 1 1.9651 -0.8633 3.9130 32 1 4.2244 -0.1506 6.5863 33 1 0.7303 -2.5026 2.5544 34 1 2.1020 -3.6892 2.6237 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594827139.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:13 Heat of formation + Delta-G solvation = -28.529852 kcal Electronic energy + Delta-G solvation = -18344.210987 eV Core-core repulsion = 15405.534115 eV Total energy + Delta-G solvation = -2938.676872 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 260.098 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.89690 -39.15316 -38.41121 -37.04298 -34.56033 -34.19112 -30.06875 -27.70168 -26.60420 -26.37127 -23.27191 -22.60465 -21.47254 -19.83838 -19.21730 -18.49134 -18.18533 -17.51939 -16.50191 -16.35032 -15.80217 -15.74692 -14.90657 -14.67027 -14.42347 -13.87174 -13.52052 -13.48942 -13.37619 -13.30040 -13.25926 -13.11734 -12.79624 -12.77333 -12.33153 -12.26038 -12.14392 -12.10259 -11.35216 -10.99965 -10.97255 -10.50248 -9.89414 -9.76579 -8.11932 -6.21585 -0.56354 1.48319 1.50773 1.59510 1.80091 2.39852 2.48499 2.87142 3.06055 3.21400 3.75346 3.83981 4.01860 4.08416 4.17610 4.42742 4.55482 4.59480 4.62771 4.74471 4.76435 4.79044 4.85836 5.00168 5.05581 5.09259 5.23640 5.25345 5.63066 5.65294 5.87609 5.91942 6.32515 6.87283 7.47238 8.97510 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.027083 B = 0.006421 C = 0.005732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.602124 B = 4359.856549 C = 4883.320974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.977 5.977 3 C 0.048 3.952 4 C -0.147 4.147 5 C -0.196 4.196 6 S 2.821 3.179 7 O -1.001 7.001 8 O -1.008 7.008 9 N -1.055 6.055 10 C 0.137 3.863 11 C 0.028 3.972 12 C -0.529 4.529 13 H 0.065 0.935 14 C 0.021 3.979 15 N -0.917 5.917 16 Si 0.954 3.046 17 H -0.278 1.278 18 H -0.287 1.287 19 H -0.265 1.265 20 C 0.133 3.867 21 H 0.073 0.927 22 H 0.067 0.933 23 H 0.094 0.906 24 H 0.129 0.871 25 H 0.123 0.877 26 H 0.115 0.885 27 H 0.091 0.909 28 H 0.105 0.895 29 H 0.065 0.935 30 H 0.048 0.952 31 H 0.047 0.953 32 H 0.263 0.737 33 H 0.074 0.926 34 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.279 5.344 -8.953 12.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.816 5.816 3 C -0.059 4.059 4 C -0.186 4.186 5 C -0.235 4.235 6 S 2.834 3.166 7 O -0.986 6.986 8 O -0.993 6.993 9 N -0.897 5.897 10 C 0.011 3.989 11 C 0.007 3.993 12 C -0.568 4.568 13 H 0.083 0.917 14 C -0.179 4.179 15 N -0.555 5.555 16 Si 0.780 3.220 17 H -0.204 1.204 18 H -0.212 1.212 19 H -0.190 1.190 20 C 0.007 3.993 21 H 0.092 0.908 22 H 0.086 0.914 23 H 0.112 0.888 24 H 0.147 0.853 25 H 0.141 0.859 26 H 0.133 0.867 27 H 0.109 0.891 28 H 0.123 0.877 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.092 0.908 34 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.992 5.025 -9.923 12.634 hybrid contribution 0.480 -0.189 1.143 1.254 sum -5.512 4.836 -8.780 11.439 Atomic orbital electron populations 1.21700 0.77005 1.04088 1.03261 1.57287 1.15849 1.20081 1.88375 1.21693 0.97551 0.81107 1.05522 1.23435 1.00906 0.95914 0.98360 1.23403 1.04452 1.03137 0.92503 1.00464 0.72064 0.72608 0.71494 1.93529 1.67762 1.59886 1.77387 1.93502 1.42343 1.85869 1.77560 1.60243 1.34938 1.66246 1.28236 1.22776 0.92120 0.98951 0.85038 1.20381 0.92760 0.95412 0.90732 1.21347 1.38326 0.95043 1.02066 0.91660 1.25730 0.95681 0.95591 1.00934 1.70057 1.42641 1.09308 1.33526 0.85620 0.78690 0.78715 0.78978 1.20423 1.21243 1.18982 1.22703 0.96315 0.95752 0.84480 0.90812 0.91397 0.88797 0.85316 0.85906 0.86692 0.89082 0.87681 0.91686 0.93321 0.93464 0.92829 0.90775 0.90499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.90 9.53 127.77 1.22 3.12 16 2 N -0.98 -28.40 3.58 -516.51 -1.85 -30.25 16 3 C 0.05 1.26 6.40 44.99 0.29 1.55 16 4 C -0.15 -2.70 9.72 30.59 0.30 -2.40 16 5 C -0.20 -4.70 10.13 30.60 0.31 -4.39 16 6 S 2.82 103.47 6.65 -56.49 -0.38 103.10 16 7 O -1.00 -39.57 17.21 -128.00 -2.20 -41.77 16 8 O -1.01 -41.93 16.92 -128.00 -2.17 -44.10 16 9 N -1.05 -41.45 4.29 -549.54 -2.36 -43.81 16 10 C 0.14 6.04 8.31 83.26 0.69 6.73 16 11 C 0.03 1.30 3.79 -11.12 -0.04 1.26 16 12 C -0.53 -26.74 8.83 25.60 0.23 -26.52 16 13 H 0.07 3.19 7.81 -2.91 -0.02 3.17 16 14 C 0.02 1.08 5.46 84.65 0.46 1.54 16 15 N -0.92 -50.06 13.26 21.44 0.28 -49.77 16 16 Si 0.95 41.00 29.54 68.60 2.03 43.02 16 17 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 18 H -0.29 -12.24 7.11 99.48 0.71 -11.53 16 19 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 20 C 0.13 5.17 8.29 83.18 0.69 5.86 16 21 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 22 H 0.07 1.60 7.79 -2.39 -0.02 1.58 16 23 H 0.09 1.69 6.33 -2.39 -0.02 1.68 16 24 H 0.13 3.60 7.37 -2.39 -0.02 3.58 16 25 H 0.12 1.73 8.14 -2.39 -0.02 1.72 16 26 H 0.11 1.76 6.46 -2.39 -0.02 1.74 16 27 H 0.09 2.38 8.12 -2.39 -0.02 2.36 16 28 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 29 H 0.06 2.90 8.10 -2.39 -0.02 2.88 16 30 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.05 2.35 8.11 -2.38 -0.02 2.34 16 32 H 0.26 13.70 8.31 -92.70 -0.77 12.93 16 33 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 34 H 0.08 2.91 8.10 -2.39 -0.02 2.89 16 Total: -1.00 -62.99 300.44 -1.41 -64.40 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: 1.09 Total: 12.42 kcal Atomic # 6 Polarization: -17.39 SS G_CDS: 4.14 Total: -13.25 kcal Atomic # 7 Polarization: -119.90 SS G_CDS: -3.92 Total: -123.82 kcal Atomic # 8 Polarization: -81.50 SS G_CDS: -4.37 Total: -85.87 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 2.03 Total: 43.02 kcal Atomic # 16 Polarization: 103.47 SS G_CDS: -0.38 Total: 103.10 kcal Total: -62.99 -1.41 -64.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594827139.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.870 kcal (2) G-P(sol) polarization free energy of solvation -62.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds