Wall clock time and date at job start Mon Mar 30 2020 04:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38723 * 120.41301 * 2 1 4 4 C 1.38683 * 118.54443 * 179.97438 * 3 2 1 5 5 N 1.32202 * 119.18173 * 359.73047 * 4 3 2 6 6 C 1.32489 * 120.75205 * 0.54935 * 5 4 3 7 7 C 1.48551 * 119.20405 * 179.71895 * 6 5 4 8 8 N 1.30684 * 126.40531 * 179.70382 * 7 6 5 9 9 O 1.21287 * 110.11242 * 180.02562 * 8 7 6 10 10 C 1.33666 * 110.01557 * 0.02562 * 9 8 7 11 11 C 1.50702 * 126.45049 * 179.97438 * 10 9 8 12 12 H 1.08999 * 109.47077 * 180.02562 * 11 10 9 13 13 C 1.52998 * 109.46870 * 300.02063 * 11 10 9 14 14 C 1.50693 * 109.47160 * 60.02195 * 11 10 9 15 15 H 1.08002 * 120.00395 * 0.02562 * 14 11 10 16 16 C 1.37881 * 119.99882 * 180.02562 * 14 11 10 17 17 N 1.31516 * 120.00041 * 359.97438 * 16 14 11 18 18 Si 1.86805 * 119.99922 * 180.02562 * 16 14 11 19 19 H 1.48507 * 109.47077 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47171 * 119.99621 * 18 16 14 21 21 H 1.48495 * 109.46601 * 239.99708 * 18 16 14 22 22 N 1.30981 * 107.10420 * 359.97438 * 10 9 8 23 23 N 1.32180 * 120.40625 * 179.97438 * 2 1 3 24 24 H 1.09006 * 109.46741 * 270.01777 * 1 2 3 25 25 H 1.08996 * 109.46966 * 30.01959 * 1 2 3 26 26 H 1.09003 * 109.47424 * 150.02360 * 1 2 3 27 27 H 1.08002 * 120.72870 * 0.02562 * 3 2 1 28 28 H 1.08000 * 120.40895 * 180.02562 * 4 3 2 29 29 H 1.08994 * 109.47355 * 180.02562 * 13 11 10 30 30 H 1.09001 * 109.47563 * 300.00327 * 13 11 10 31 31 H 1.09003 * 109.46842 * 59.99793 * 13 11 10 32 32 H 0.96993 * 119.99947 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2092 1.1963 0.0000 4 6 3.5953 1.1511 0.0005 5 7 4.2019 -0.0235 0.0065 6 6 3.5012 -1.1479 0.0009 7 6 4.2182 -2.4489 0.0015 8 7 3.6715 -3.6358 0.0020 9 8 4.5315 -4.4911 0.0029 10 6 5.7415 -3.9233 0.0037 11 6 7.0670 -4.6403 0.0055 12 1 7.8755 -3.9092 0.0062 13 6 7.1710 -5.5168 1.2552 14 6 7.1723 -5.5045 -1.2244 15 1 6.3608 -5.5316 -1.9365 16 6 8.3048 -6.2607 -1.4408 17 7 9.2933 -6.2274 -0.5739 18 14 8.4356 -7.3316 -2.9658 19 1 7.1987 -7.1925 -3.7759 20 1 9.6067 -6.9035 -3.7722 21 1 8.6049 -8.7503 -2.5613 22 7 5.5584 -2.6263 0.0026 23 7 2.1760 -1.1400 0.0005 24 1 -0.3633 0.0003 1.0277 25 1 -0.3633 0.8898 -0.5141 26 1 -0.3634 -0.8902 -0.5135 27 1 1.6880 2.1422 0.0004 28 1 4.1721 2.0642 0.0010 29 1 8.1298 -6.0350 1.2568 30 1 7.0948 -4.8917 2.1449 31 1 6.3624 -6.2478 1.2545 32 1 10.0900 -6.7591 -0.7263 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596597703.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:46 Heat of formation + Delta-G solvation = 90.259249 kcal Electronic energy + Delta-G solvation = -18331.830032 eV Core-core repulsion = 15295.153042 eV Total energy + Delta-G solvation = -3036.676991 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.101 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -46.60819 -42.18166 -37.23563 -36.67209 -35.53918 -34.36728 -33.26419 -31.48900 -29.59507 -27.36982 -27.01483 -25.42430 -24.40999 -23.54519 -22.01531 -19.35756 -18.88563 -18.70064 -18.03807 -17.39867 -16.82844 -16.51919 -16.31866 -15.63674 -15.18243 -14.79845 -14.22822 -14.08413 -13.80515 -13.57842 -13.20096 -13.14850 -12.88299 -12.84393 -12.54600 -12.29982 -12.20222 -12.08421 -11.95492 -11.81558 -11.51532 -10.97114 -10.57175 -10.42978 -10.32329 -8.21522 -6.38139 -0.77093 0.00287 0.27215 1.21595 1.45195 1.47909 1.59125 1.75573 1.95743 2.40885 2.58425 2.63906 3.08527 3.30046 3.46688 3.58045 3.91909 4.01410 4.28103 4.52041 4.58686 4.66403 4.70830 4.76146 4.81310 4.91937 4.99798 5.03218 5.34361 5.41060 5.64973 5.83129 5.90923 6.03546 6.63403 6.80985 7.08075 7.31141 8.84698 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.038296 B = 0.004266 C = 0.004208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.967965 B = 6562.345929 C = 6652.519832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.155 3.845 3 C -0.188 4.188 4 C 0.141 3.859 5 N -0.516 5.516 6 C 0.376 3.624 7 C 0.203 3.797 8 N -0.370 5.370 9 O 0.078 5.922 10 C 0.237 3.763 11 C 0.128 3.872 12 H 0.058 0.942 13 C -0.128 4.128 14 C -0.545 4.545 15 H 0.052 0.948 16 C 0.033 3.967 17 N -0.903 5.903 18 Si 0.965 3.035 19 H -0.274 1.274 20 H -0.276 1.276 21 H -0.271 1.271 22 N -0.493 5.493 23 N -0.521 5.521 24 H 0.101 0.899 25 H 0.121 0.879 26 H 0.071 0.929 27 H 0.210 0.790 28 H 0.218 0.782 29 H 0.087 0.913 30 H 0.035 0.965 31 H 0.045 0.955 32 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.244 14.606 1.856 20.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.010 3.990 3 C -0.209 4.209 4 C -0.023 4.023 5 N -0.233 5.233 6 C 0.109 3.891 7 C -0.070 4.070 8 N -0.079 5.079 9 O 0.018 5.982 10 C 0.019 3.981 11 C 0.107 3.893 12 H 0.076 0.924 13 C -0.187 4.187 14 C -0.583 4.583 15 H 0.071 0.929 16 C -0.169 4.169 17 N -0.540 5.540 18 Si 0.789 3.211 19 H -0.199 1.199 20 H -0.201 1.201 21 H -0.196 1.196 22 N -0.226 5.226 23 N -0.239 5.239 24 H 0.120 0.880 25 H 0.139 0.861 26 H 0.090 0.910 27 H 0.227 0.773 28 H 0.235 0.765 29 H 0.106 0.894 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.337 13.987 1.908 20.120 hybrid contribution 0.202 -0.166 -0.707 0.754 sum -14.135 13.821 1.201 19.805 Atomic orbital electron populations 1.20958 0.84220 1.05501 1.05119 1.22669 0.99748 0.87311 0.89311 1.23488 0.95802 1.01833 0.99819 1.24177 0.93738 0.95309 0.89082 1.68217 1.42413 0.99208 1.13455 1.18702 0.85968 0.87858 0.96596 1.23155 0.87339 0.92384 1.04081 1.74872 1.14105 0.98636 1.20335 1.85284 1.14022 1.33453 1.65435 1.30092 0.91443 0.86884 0.89717 1.17734 0.80228 0.93786 0.97534 0.92434 1.21720 1.03986 0.99012 0.93951 1.21064 1.03779 1.27352 1.06122 0.92923 1.25564 0.94558 0.97211 0.99538 1.69940 1.06867 1.40916 1.36324 0.85402 0.78035 0.78633 0.78998 1.19898 1.20144 1.19575 1.72148 1.13248 1.14707 1.22531 1.68043 1.07638 1.33699 1.14511 0.88034 0.86059 0.91011 0.77349 0.76544 0.89394 0.94593 0.93624 0.91898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.20 10.22 71.23 0.73 -0.48 16 2 C 0.16 3.32 6.82 42.62 0.29 3.61 16 3 C -0.19 -2.76 9.86 22.49 0.22 -2.53 16 4 C 0.14 2.87 11.30 84.74 0.96 3.83 16 5 N -0.52 -17.59 10.34 -189.05 -1.95 -19.54 16 6 C 0.38 14.65 7.60 137.66 1.05 15.69 16 7 C 0.20 9.33 7.99 137.37 1.10 10.42 16 8 N -0.37 -17.27 12.16 -59.28 -0.72 -17.99 16 9 O 0.08 3.74 11.29 74.64 0.84 4.58 16 10 C 0.24 11.66 6.94 88.36 0.61 12.28 16 11 C 0.13 6.50 2.77 -12.29 -0.03 6.47 16 12 H 0.06 3.13 8.14 -2.39 -0.02 3.11 16 13 C -0.13 -5.96 8.95 71.98 0.64 -5.32 16 14 C -0.54 -29.52 8.55 25.60 0.22 -29.30 16 15 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16 16 C 0.03 1.73 5.30 84.66 0.45 2.18 16 17 N -0.90 -48.47 11.32 21.45 0.24 -48.22 16 18 Si 0.96 42.04 29.54 68.60 2.03 44.06 16 19 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 20 H -0.28 -11.73 7.11 99.48 0.71 -11.03 16 21 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 22 N -0.49 -24.16 11.55 -302.64 -3.50 -27.65 16 23 N -0.52 -17.50 10.27 -177.20 -1.82 -19.32 16 24 H 0.10 0.95 8.14 -2.38 -0.02 0.93 16 25 H 0.12 0.51 8.10 -2.39 -0.02 0.50 16 26 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.21 0.63 8.06 -2.91 -0.02 0.61 16 28 H 0.22 2.32 8.06 -2.91 -0.02 2.30 16 29 H 0.09 4.36 6.07 -2.39 -0.01 4.34 16 30 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.27 13.66 8.31 -92.71 -0.77 12.89 16 Total: -1.00 -70.58 291.13 2.50 -68.08 By element: Atomic # 1 Polarization: -2.00 SS G_CDS: 1.15 Total: -0.85 kcal Atomic # 6 Polarization: 10.62 SS G_CDS: 6.23 Total: 16.85 kcal Atomic # 7 Polarization: -124.97 SS G_CDS: -7.75 Total: -132.72 kcal Atomic # 8 Polarization: 3.74 SS G_CDS: 0.84 Total: 4.58 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.06 kcal Total: -70.58 2.50 -68.08 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596597703.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.335 kcal (2) G-P(sol) polarization free energy of solvation -70.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds