Wall clock time and date at job start Mon Mar 30 2020 05:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86806 * 119.99641 * 2 1 4 4 H 1.48505 * 109.47169 * 270.00016 * 3 2 1 5 5 H 1.48497 * 109.47005 * 29.99648 * 3 2 1 6 6 H 1.48502 * 109.47298 * 150.00071 * 3 2 1 7 7 C 1.37873 * 120.00783 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99540 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00535 * 180.02562 * 7 2 1 10 10 C 1.53514 * 114.17153 * 179.97438 * 9 7 2 11 11 N 1.47489 * 87.92704 * 220.32575 * 10 9 7 12 12 C 1.46904 * 110.99601 * 138.70367 * 11 10 9 13 13 C 1.50698 * 109.46878 * 169.99844 * 12 11 10 14 14 C 1.38350 * 119.85418 * 90.00108 * 13 12 11 15 15 C 1.37965 * 120.14580 * 179.97438 * 14 13 12 16 16 C 1.39574 * 119.85189 * 0.02562 * 15 14 13 17 17 C 1.47848 * 120.14511 * 180.02562 * 16 15 14 18 18 N 1.34774 * 120.00044 * 179.97438 * 17 16 15 19 19 O 1.21558 * 119.99543 * 359.97438 * 17 16 15 20 20 C 1.39581 * 119.71122 * 359.97438 * 16 15 14 21 21 C 1.37951 * 119.85107 * 0.02562 * 20 16 15 22 22 C 1.47472 * 87.83831 * 27.00939 * 11 10 9 23 23 H 0.96996 * 120.00389 * 0.02562 * 1 2 3 24 24 H 1.09006 * 113.25297 * 312.94523 * 9 7 2 25 25 H 1.08997 * 113.47715 * 105.56180 * 10 9 7 26 26 H 1.09000 * 113.47487 * 335.09093 * 10 9 7 27 27 H 1.09006 * 109.46852 * 50.00109 * 12 11 10 28 28 H 1.08995 * 109.47340 * 289.99939 * 12 11 10 29 29 H 1.07998 * 119.92842 * 0.25215 * 14 13 12 30 30 H 1.08001 * 120.06969 * 180.02562 * 15 14 13 31 31 H 0.96998 * 120.00104 * 0.02562 * 18 17 16 32 32 H 0.96998 * 119.99409 * 179.97438 * 18 17 16 33 33 H 1.07995 * 120.07201 * 179.97438 * 20 16 15 34 34 H 1.08005 * 119.92860 * 180.02562 * 21 20 16 35 35 H 1.09007 * 113.47731 * 87.75174 * 22 11 10 36 36 H 1.08995 * 113.47711 * 218.22267 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4463 2.6527 0.7000 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5116 -1.1939 0.0000 10 6 4.1403 -2.5944 0.0000 11 7 5.1432 -2.0858 0.9543 12 6 5.4141 -3.0721 2.0088 13 6 6.6071 -2.6294 2.8161 14 6 6.4261 -1.8297 3.9305 15 6 7.5140 -1.4213 4.6742 16 6 8.7993 -1.8164 4.2999 17 6 9.9696 -1.3830 5.0926 18 7 11.2094 -1.7666 4.7289 19 8 9.8136 -0.6807 6.0725 20 6 8.9748 -2.6233 3.1746 21 6 7.8785 -3.0245 2.4396 22 6 4.1397 -1.1002 1.3977 23 1 -0.4850 0.8400 -0.0004 24 1 3.9422 -0.5110 -0.7324 25 1 4.5631 -2.8805 -0.9630 26 1 3.4906 -3.3619 0.4206 27 1 5.6218 -4.0412 1.5550 28 1 4.5446 -3.1550 2.6608 29 1 5.4308 -1.5280 4.2213 30 1 7.3713 -0.7974 5.5441 31 1 11.3338 -2.3267 3.9468 32 1 11.9772 -1.4819 5.2488 33 1 9.9667 -2.9320 2.8795 34 1 8.0128 -3.6492 1.5689 35 1 3.4899 -1.4691 2.1913 36 1 4.5620 -0.1201 1.6191 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597193595.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:14:56 Heat of formation + Delta-G solvation = 20.455124 kcal Electronic energy + Delta-G solvation = -18469.114174 eV Core-core repulsion = 15532.950593 eV Total energy + Delta-G solvation = -2936.163581 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.27807 -39.34120 -38.08285 -34.14254 -33.03861 -32.07414 -30.96733 -29.10537 -26.17060 -25.09849 -23.55959 -22.67946 -21.66135 -20.34743 -18.70829 -18.37411 -17.09890 -17.02517 -15.61215 -15.34198 -15.21431 -14.93926 -14.87319 -14.39705 -13.81420 -13.69630 -13.52766 -13.10400 -12.70928 -12.39498 -12.07549 -11.81768 -11.38305 -11.08016 -11.00085 -10.38795 -10.27740 -9.99631 -9.98732 -9.96823 -9.69468 -9.17819 -9.04118 -8.76675 -8.58651 -8.23262 -6.14029 -4.15056 0.75725 1.33612 2.73337 3.27720 3.27972 3.36952 3.41559 3.77760 4.39355 4.56717 4.64451 4.75263 4.86092 5.04888 5.14504 5.24100 5.33068 5.51617 5.65252 5.81917 5.84184 5.97170 6.04559 6.16472 6.22619 6.29073 6.35385 6.45041 6.50164 6.56502 6.71382 6.82676 6.92240 7.06848 7.30083 7.63575 7.76480 8.01540 8.44455 8.88601 9.48879 10.98360 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.031311 B = 0.004185 C = 0.003900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.053500 B = 6688.331073 C = 7176.903342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.075 3.925 3 Si 0.875 3.125 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.257 1.257 7 C -0.513 4.513 8 H 0.074 0.926 9 C 0.001 3.999 10 C 0.009 3.991 11 N -0.478 5.478 12 C 0.048 3.952 13 C -0.028 4.028 14 C -0.119 4.119 15 C -0.057 4.057 16 C -0.154 4.154 17 C 0.566 3.434 18 N -0.854 5.854 19 O -0.544 6.544 20 C -0.087 4.087 21 C -0.113 4.113 22 C -0.011 4.011 23 H 0.265 0.735 24 H 0.056 0.944 25 H 0.068 0.932 26 H 0.063 0.937 27 H 0.077 0.923 28 H 0.056 0.944 29 H 0.129 0.871 30 H 0.134 0.866 31 H 0.401 0.599 32 H 0.403 0.597 33 H 0.123 0.877 34 H 0.128 0.872 35 H 0.066 0.934 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.235 -6.758 6.199 21.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.128 4.128 3 Si 0.702 3.298 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.181 1.181 7 C -0.551 4.551 8 H 0.092 0.908 9 C -0.019 4.019 10 C -0.120 4.120 11 N -0.200 5.200 12 C -0.080 4.080 13 C -0.029 4.029 14 C -0.138 4.138 15 C -0.076 4.076 16 C -0.157 4.157 17 C 0.353 3.647 18 N -0.418 5.418 19 O -0.422 6.422 20 C -0.106 4.106 21 C -0.132 4.132 22 C -0.140 4.140 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.086 0.914 26 H 0.081 0.919 27 H 0.095 0.905 28 H 0.075 0.925 29 H 0.147 0.853 30 H 0.152 0.848 31 H 0.230 0.770 32 H 0.234 0.766 33 H 0.140 0.860 34 H 0.146 0.854 35 H 0.084 0.916 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 19.456 -6.013 6.587 21.403 hybrid contribution 0.043 0.401 0.176 0.440 sum 19.498 -5.612 6.763 21.388 Atomic orbital electron populations 1.69901 1.06427 1.27187 1.50021 1.25007 0.94636 0.99252 0.93910 0.86883 0.80773 0.83397 0.78734 1.20257 1.21458 1.18141 1.20910 0.88209 0.94530 1.51424 0.90782 1.20501 0.96272 0.92713 0.92402 1.23825 0.92419 0.99628 0.96103 1.68921 1.31844 1.09450 1.09780 1.21743 0.94872 0.96927 0.94480 1.20114 0.95051 0.94217 0.93536 1.21133 0.99235 0.98084 0.95341 1.21227 0.90843 0.96731 0.98758 1.19770 0.93690 1.03829 0.98410 1.18366 0.83529 0.78990 0.83790 1.43757 1.08278 1.56029 1.33696 1.90807 1.86040 1.37799 1.27586 1.21180 0.98833 0.96541 0.94038 1.20953 0.91618 1.00993 0.99621 1.24472 0.92159 0.95953 1.01399 0.92539 0.92550 0.91400 0.91922 0.90454 0.92543 0.85286 0.84844 0.76965 0.76638 0.85960 0.85380 0.91606 0.91800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.79 13.96 55.43 0.77 -26.02 16 2 C 0.07 2.08 5.47 -17.82 -0.10 1.99 16 3 Si 0.88 21.02 27.14 -169.99 -4.61 16.41 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.26 -5.90 5.68 56.52 0.32 -5.58 16 7 C -0.51 -13.84 9.37 -34.44 -0.32 -14.16 16 8 H 0.07 2.16 8.06 -52.49 -0.42 1.74 16 9 C 0.00 0.01 2.96 -91.24 -0.27 -0.26 16 10 C 0.01 0.17 7.25 -7.53 -0.05 0.11 16 11 N -0.48 -8.56 6.32 -246.07 -1.55 -10.12 16 12 C 0.05 0.71 4.93 -4.97 -0.02 0.68 16 13 C -0.03 -0.39 5.47 -104.54 -0.57 -0.96 16 14 C -0.12 -1.62 9.68 -39.64 -0.38 -2.01 16 15 C -0.06 -0.75 9.60 -39.18 -0.38 -1.13 16 16 C -0.15 -1.86 5.87 -104.97 -0.62 -2.48 16 17 C 0.57 6.82 8.05 -12.33 -0.10 6.72 16 18 N -0.85 -6.23 8.82 30.53 0.27 -5.96 16 19 O -0.54 -8.67 17.18 5.31 0.09 -8.58 16 20 C -0.09 -0.88 9.54 -39.19 -0.37 -1.26 16 21 C -0.11 -1.31 9.68 -39.64 -0.38 -1.69 16 22 C -0.01 -0.22 6.69 -7.54 -0.05 -0.27 16 23 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 24 H 0.06 1.31 7.04 -51.93 -0.37 0.94 16 25 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 26 H 0.06 1.18 7.87 -51.93 -0.41 0.77 16 27 H 0.08 1.01 8.02 -51.93 -0.42 0.59 16 28 H 0.06 0.84 7.24 -51.93 -0.38 0.47 16 29 H 0.13 1.70 8.06 -52.49 -0.42 1.28 16 30 H 0.13 1.74 7.65 -52.49 -0.40 1.34 16 31 H 0.40 1.80 6.86 -40.82 -0.28 1.52 16 32 H 0.40 2.34 8.93 -40.82 -0.36 1.98 16 33 H 0.12 0.78 6.41 -52.49 -0.34 0.44 16 34 H 0.13 1.27 8.06 -52.48 -0.42 0.84 16 35 H 0.07 1.35 7.37 -51.92 -0.38 0.97 16 36 H 0.06 1.34 7.11 -51.93 -0.37 0.97 16 LS Contribution 303.01 15.07 4.57 4.57 Total: -1.00 -32.32 303.01 -8.70 -41.02 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -4.61 Total: 3.39 kcal Atomic # 6 Polarization: -11.09 SS G_CDS: -3.62 Total: -14.71 kcal Atomic # 7 Polarization: -41.58 SS G_CDS: -0.51 Total: -42.10 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: 0.09 Total: -8.58 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.61 Total: 16.41 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -32.32 -8.70 -41.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597193595.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.473 kcal (2) G-P(sol) polarization free energy of solvation -32.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds