Wall clock time and date at job start Mon Mar 30 2020 05:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86806 * 119.99641 * 2 1 4 4 H 1.48505 * 109.47169 * 270.00016 * 3 2 1 5 5 H 1.48497 * 109.47005 * 29.99648 * 3 2 1 6 6 H 1.48502 * 109.47298 * 150.00071 * 3 2 1 7 7 C 1.37873 * 120.00783 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99540 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00535 * 180.02562 * 7 2 1 10 10 C 1.53514 * 114.17153 * 179.97438 * 9 7 2 11 11 N 1.47489 * 87.92704 * 220.32575 * 10 9 7 12 12 C 1.46904 * 110.99601 * 138.70367 * 11 10 9 13 13 C 1.50698 * 109.46878 * 169.99844 * 12 11 10 14 14 C 1.38350 * 119.85418 * 90.00108 * 13 12 11 15 15 C 1.37965 * 120.14580 * 179.97438 * 14 13 12 16 16 C 1.39574 * 119.85189 * 0.02562 * 15 14 13 17 17 C 1.47848 * 120.14511 * 180.02562 * 16 15 14 18 18 N 1.34774 * 120.00044 * 179.97438 * 17 16 15 19 19 O 1.21558 * 119.99543 * 359.97438 * 17 16 15 20 20 C 1.39581 * 119.71122 * 359.97438 * 16 15 14 21 21 C 1.37951 * 119.85107 * 0.02562 * 20 16 15 22 22 C 1.47472 * 87.83831 * 27.00939 * 11 10 9 23 23 H 0.96996 * 120.00389 * 0.02562 * 1 2 3 24 24 H 1.09006 * 113.25297 * 312.94523 * 9 7 2 25 25 H 1.08997 * 113.47715 * 105.56180 * 10 9 7 26 26 H 1.09000 * 113.47487 * 335.09093 * 10 9 7 27 27 H 1.09006 * 109.46852 * 50.00109 * 12 11 10 28 28 H 1.08995 * 109.47340 * 289.99939 * 12 11 10 29 29 H 1.07998 * 119.92842 * 0.25215 * 14 13 12 30 30 H 1.08001 * 120.06969 * 180.02562 * 15 14 13 31 31 H 0.96998 * 120.00104 * 0.02562 * 18 17 16 32 32 H 0.96998 * 119.99409 * 179.97438 * 18 17 16 33 33 H 1.07995 * 120.07201 * 179.97438 * 20 16 15 34 34 H 1.08005 * 119.92860 * 180.02562 * 21 20 16 35 35 H 1.09007 * 113.47731 * 87.75174 * 22 11 10 36 36 H 1.08995 * 113.47711 * 218.22267 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4463 2.6527 0.7000 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5116 -1.1939 0.0000 10 6 4.1403 -2.5944 0.0000 11 7 5.1432 -2.0858 0.9543 12 6 5.4141 -3.0721 2.0088 13 6 6.6071 -2.6294 2.8161 14 6 6.4261 -1.8297 3.9305 15 6 7.5140 -1.4213 4.6742 16 6 8.7993 -1.8164 4.2999 17 6 9.9696 -1.3830 5.0926 18 7 11.2094 -1.7666 4.7289 19 8 9.8136 -0.6807 6.0725 20 6 8.9748 -2.6233 3.1746 21 6 7.8785 -3.0245 2.4396 22 6 4.1397 -1.1002 1.3977 23 1 -0.4850 0.8400 -0.0004 24 1 3.9422 -0.5110 -0.7324 25 1 4.5631 -2.8805 -0.9630 26 1 3.4906 -3.3619 0.4206 27 1 5.6218 -4.0412 1.5550 28 1 4.5446 -3.1550 2.6608 29 1 5.4308 -1.5280 4.2213 30 1 7.3713 -0.7974 5.5441 31 1 11.3338 -2.3267 3.9468 32 1 11.9772 -1.4819 5.2488 33 1 9.9667 -2.9320 2.8795 34 1 8.0128 -3.6492 1.5689 35 1 3.4899 -1.4691 2.1913 36 1 4.5620 -0.1201 1.6191 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597193595.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:14:56 Heat of formation + Delta-G solvation = -4.888634 kcal Electronic energy + Delta-G solvation = -18470.213162 eV Core-core repulsion = 15532.950593 eV Total energy + Delta-G solvation = -2937.262569 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.30308 -40.69407 -39.13890 -35.08764 -34.75623 -33.47957 -31.87479 -30.57124 -27.70416 -26.68336 -24.92604 -23.59835 -22.93293 -21.30246 -20.41756 -19.22571 -19.05458 -17.86707 -16.95366 -16.74381 -16.23259 -16.01789 -15.87526 -15.83029 -15.39872 -14.97700 -14.57897 -14.56282 -14.19778 -13.52855 -13.42905 -13.39604 -12.91921 -12.66854 -12.21817 -11.90361 -11.78713 -11.64038 -11.46482 -11.20625 -11.08709 -10.76301 -10.64902 -9.96001 -9.86730 -9.66936 -8.29594 -6.34238 -0.19185 0.42085 1.37255 1.40487 1.52041 1.79725 2.37105 2.51879 2.81704 3.04285 3.36770 3.70790 3.79466 3.94826 4.05018 4.08267 4.22337 4.33233 4.41608 4.50980 4.66205 4.69808 4.73685 4.85989 4.92373 5.04598 5.05304 5.24537 5.31678 5.39389 5.48676 5.63888 5.66635 5.83197 5.91627 6.24423 6.29865 6.39354 6.72066 7.26144 7.33000 8.86383 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.031311 B = 0.004185 C = 0.003900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.053500 B = 6688.331073 C = 7176.903342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.017 3.983 3 Si 0.939 3.061 4 H -0.269 1.269 5 H -0.290 1.290 6 H -0.240 1.240 7 C -0.513 4.513 8 H 0.037 0.963 9 C -0.017 4.017 10 C 0.019 3.981 11 N -0.468 5.468 12 C 0.049 3.951 13 C -0.045 4.045 14 C -0.132 4.132 15 C -0.073 4.073 16 C -0.160 4.160 17 C 0.563 3.437 18 N -0.827 5.827 19 O -0.593 6.593 20 C -0.072 4.072 21 C -0.112 4.112 22 C -0.001 4.001 23 H 0.266 0.734 24 H 0.057 0.943 25 H 0.088 0.912 26 H 0.060 0.940 27 H 0.101 0.899 28 H 0.049 0.951 29 H 0.121 0.879 30 H 0.124 0.876 31 H 0.418 0.582 32 H 0.413 0.587 33 H 0.167 0.833 34 H 0.152 0.848 35 H 0.058 0.942 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.767 -7.443 5.578 24.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.181 4.181 3 Si 0.763 3.237 4 H -0.195 1.195 5 H -0.216 1.216 6 H -0.163 1.163 7 C -0.551 4.551 8 H 0.055 0.945 9 C -0.036 4.036 10 C -0.109 4.109 11 N -0.190 5.190 12 C -0.078 4.078 13 C -0.046 4.046 14 C -0.151 4.151 15 C -0.092 4.092 16 C -0.163 4.163 17 C 0.350 3.650 18 N -0.391 5.391 19 O -0.475 6.475 20 C -0.090 4.090 21 C -0.130 4.130 22 C -0.130 4.130 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.106 0.894 26 H 0.079 0.921 27 H 0.119 0.881 28 H 0.067 0.933 29 H 0.139 0.861 30 H 0.142 0.858 31 H 0.251 0.749 32 H 0.246 0.754 33 H 0.185 0.815 34 H 0.170 0.830 35 H 0.076 0.924 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 23.049 -6.741 5.939 24.738 hybrid contribution -1.009 0.484 0.370 1.179 sum 22.041 -6.257 6.309 23.765 Atomic orbital electron populations 1.70043 1.08301 1.28142 1.52319 1.25857 0.95305 1.03073 0.93848 0.85863 0.79998 0.78723 0.79129 1.19476 1.21632 1.16284 1.21166 0.90732 0.93009 1.50158 0.94503 1.20516 0.93431 0.95672 0.94005 1.23693 0.92409 0.97336 0.97510 1.68856 1.30129 1.09651 1.10376 1.21765 0.95352 0.97028 0.93702 1.20089 0.95620 0.95211 0.93643 1.21123 0.99087 0.98839 0.96017 1.21241 0.91745 0.97401 0.98861 1.19937 0.93191 1.04053 0.99149 1.18436 0.84711 0.78645 0.83200 1.43537 1.07027 1.54754 1.33825 1.90790 1.86807 1.40190 1.29676 1.21578 1.00618 0.94543 0.92251 1.21256 0.90863 1.00636 1.00226 1.24208 0.92552 0.96786 0.99484 0.92512 0.92484 0.89404 0.92149 0.88107 0.93262 0.86076 0.85839 0.74931 0.75438 0.81518 0.82989 0.92419 0.92078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.31 13.96 21.44 0.30 -58.01 16 2 C 0.02 0.96 5.47 84.65 0.46 1.42 16 3 Si 0.94 43.55 27.14 68.60 1.86 45.41 16 4 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 5 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 6 H -0.24 -10.32 5.68 99.48 0.57 -9.76 16 7 C -0.51 -28.22 9.37 25.60 0.24 -27.98 16 8 H 0.04 2.24 8.06 -2.91 -0.02 2.21 16 9 C -0.02 -0.75 2.96 -11.20 -0.03 -0.78 16 10 C 0.02 0.69 7.25 83.58 0.61 1.30 16 11 N -0.47 -15.73 6.32 -932.43 -5.89 -21.62 16 12 C 0.05 1.34 4.93 85.56 0.42 1.77 16 13 C -0.04 -1.12 5.47 -19.81 -0.11 -1.23 16 14 C -0.13 -3.52 9.68 22.23 0.22 -3.30 16 15 C -0.07 -1.92 9.60 22.53 0.22 -1.70 16 16 C -0.16 -3.52 5.87 -20.09 -0.12 -3.64 16 17 C 0.56 12.44 8.05 86.79 0.70 13.14 16 18 N -0.83 -9.21 8.82 -175.60 -1.55 -10.76 16 19 O -0.59 -18.62 17.18 -3.90 -0.07 -18.68 16 20 C -0.07 -1.15 9.54 22.53 0.21 -0.93 16 21 C -0.11 -2.13 9.68 22.23 0.22 -1.91 16 22 C 0.00 -0.04 6.69 83.58 0.56 0.52 16 23 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 24 H 0.06 2.55 7.04 -2.38 -0.02 2.53 16 25 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 26 H 0.06 2.22 7.87 -2.39 -0.02 2.20 16 27 H 0.10 2.28 8.02 -2.38 -0.02 2.26 16 28 H 0.05 1.42 7.24 -2.39 -0.02 1.40 16 29 H 0.12 3.28 8.06 -2.91 -0.02 3.25 16 30 H 0.12 3.37 7.65 -2.91 -0.02 3.35 16 31 H 0.42 1.75 6.86 -92.71 -0.64 1.12 16 32 H 0.41 3.50 8.93 -92.71 -0.83 2.67 16 33 H 0.17 1.10 6.41 -2.91 -0.02 1.08 16 34 H 0.15 2.19 8.06 -2.91 -0.02 2.17 16 35 H 0.06 2.38 7.37 -2.38 -0.02 2.36 16 36 H 0.06 2.47 7.11 -2.39 -0.02 2.45 16 Total: -1.00 -72.18 303.01 -2.25 -74.43 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -0.49 Total: 12.57 kcal Atomic # 6 Polarization: -26.93 SS G_CDS: 3.59 Total: -23.34 kcal Atomic # 7 Polarization: -83.26 SS G_CDS: -7.14 Total: -90.39 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: -0.07 Total: -18.68 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 1.86 Total: 45.41 kcal Total: -72.18 -2.25 -74.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597193595.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.540 kcal (2) G-P(sol) polarization free energy of solvation -72.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds