Wall clock time and date at job start Mon Mar 30 2020 05:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86810 * 120.00028 * 2 1 4 4 H 1.48495 * 109.47130 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46934 * 299.99908 * 3 2 1 6 6 H 1.48497 * 109.46797 * 59.99674 * 3 2 1 7 7 C 1.39945 * 120.00237 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00524 * 197.10016 * 7 2 1 9 9 C 1.41397 * 119.99561 * 17.38714 * 7 2 1 10 10 C 1.40563 * 120.08400 * 25.17413 * 9 7 2 11 11 C 1.37599 * 119.54533 * 179.85037 * 10 9 7 12 12 C 1.38443 * 120.13700 * 0.61174 * 11 10 9 13 13 C 1.39151 * 120.91723 * 359.67316 * 12 11 10 14 14 C 1.37247 * 119.86408 * 359.84784 * 13 12 11 15 15 C 1.50684 * 121.80091 * 180.60963 * 14 13 12 16 16 C 1.52891 * 109.98768 * 343.03597 * 15 14 13 17 17 N 1.47177 * 108.47015 * 50.24862 * 16 15 14 18 18 C 1.46901 * 110.99795 * 165.52967 * 17 16 15 19 19 C 1.50698 * 109.47051 * 56.92555 * 18 17 16 20 20 N 1.34778 * 119.99574 * 179.97438 * 19 18 17 21 21 O 1.21274 * 120.00254 * 0.02562 * 19 18 17 22 22 C 1.46613 * 110.23366 * 288.94127 * 17 16 15 23 23 H 0.96998 * 119.99646 * 0.02562 * 1 2 3 24 24 H 1.08003 * 120.22687 * 0.12999 * 10 9 7 25 25 H 1.07996 * 119.93320 * 180.32523 * 11 10 9 26 26 H 1.07989 * 119.53916 * 179.65077 * 12 11 10 27 27 H 1.09002 * 109.38647 * 103.19613 * 15 14 13 28 28 H 1.08995 * 109.38151 * 222.87574 * 15 14 13 29 29 H 1.09001 * 109.63678 * 290.55342 * 16 15 14 30 30 H 1.09001 * 109.63923 * 169.93738 * 16 15 14 31 31 H 1.09002 * 109.46607 * 176.92733 * 18 17 16 32 32 H 1.08996 * 109.46938 * 296.92073 * 18 17 16 33 33 H 0.97002 * 119.99974 * 0.02562 * 20 19 18 34 34 H 0.96998 * 119.99806 * 179.97438 * 20 19 18 35 35 H 1.08998 * 109.26537 * 292.29514 * 22 17 16 36 36 H 1.08996 * 109.26442 * 172.84066 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.7023 1.3465 0.0006 5 1 1.8835 2.3965 -1.2125 6 1 1.8835 2.3965 1.2125 7 6 2.0080 -1.2119 0.0005 8 1 3.0522 -1.2325 0.2755 9 6 1.3495 -2.4086 -0.3649 10 6 0.2237 -2.3650 -1.2054 11 6 -0.4068 -3.5365 -1.5565 12 6 0.0583 -4.7479 -1.0738 13 6 1.1680 -4.8051 -0.2361 14 6 1.8171 -3.6490 0.1182 15 6 3.0306 -3.6614 1.0114 16 6 3.1255 -4.9993 1.7455 17 7 2.9974 -6.0830 0.7580 18 6 3.4169 -7.3692 1.3306 19 6 2.6025 -7.6590 2.5649 20 7 2.8145 -8.7934 3.2611 21 8 1.7556 -6.8720 2.9313 22 6 1.6207 -6.1541 0.2588 23 1 -0.4849 0.8401 -0.0004 24 1 -0.1412 -1.4187 -1.5768 25 1 -1.2691 -3.5107 -2.2062 26 1 -0.4473 -5.6609 -1.3510 27 1 3.9261 -3.5160 0.4072 28 1 2.9522 -2.8540 1.7394 29 1 2.3210 -5.0734 2.4772 30 1 4.0898 -5.0738 2.2480 31 1 3.2609 -8.1611 0.5980 32 1 4.4733 -7.3218 1.5950 33 1 3.4916 -9.4231 2.9678 34 1 2.2906 -8.9798 4.0558 35 1 0.9627 -6.4813 1.0638 36 1 1.5716 -6.8725 -0.5595 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599685527.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:24 Heat of formation + Delta-G solvation = -14.941880 kcal Electronic energy + Delta-G solvation = -19483.282544 eV Core-core repulsion = 16545.584033 eV Total energy + Delta-G solvation = -2937.698511 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.12029 -38.19506 -35.88727 -33.74709 -33.55710 -31.85006 -30.32204 -28.54724 -26.79220 -25.02004 -23.23706 -22.16284 -20.56702 -20.31782 -18.57045 -17.21886 -16.97002 -16.66313 -15.42534 -15.34223 -14.68517 -14.52757 -14.40427 -13.96670 -13.20589 -13.13075 -12.92327 -12.25800 -11.97079 -11.68151 -11.58859 -11.30985 -11.03093 -10.96244 -10.63481 -10.58901 -10.39948 -10.32403 -10.01110 -9.62874 -9.31234 -9.12414 -9.00773 -7.83707 -7.15813 -7.00666 -6.64245 -4.23518 2.61449 2.86017 3.10369 3.13510 3.18785 3.29966 3.52186 4.01096 4.29774 4.71847 4.96563 5.17405 5.40271 5.61894 5.71659 5.95702 6.16144 6.25803 6.34377 6.40880 6.48732 6.54748 6.71485 6.82884 6.96950 7.06067 7.15189 7.18520 7.31714 7.38048 7.52816 7.59959 7.78672 8.05952 8.18417 8.22648 8.26080 8.42344 8.75501 9.01397 9.11009 10.29918 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.029200 B = 0.005693 C = 0.005092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.682369 B = 4916.924903 C = 5497.896534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.076 3.924 3 Si 0.904 3.096 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.276 1.276 7 C -0.460 4.460 8 H 0.079 0.921 9 C 0.110 3.890 10 C -0.167 4.167 11 C -0.107 4.107 12 C -0.237 4.237 13 C -0.055 4.055 14 C -0.169 4.169 15 C -0.046 4.046 16 C 0.040 3.960 17 N -0.505 5.505 18 C 0.031 3.969 19 C 0.478 3.522 20 N -0.862 5.862 21 O -0.528 6.528 22 C 0.093 3.907 23 H 0.278 0.722 24 H 0.116 0.884 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.055 0.945 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.056 0.944 31 H 0.101 0.899 32 H 0.103 0.897 33 H 0.398 0.602 34 H 0.395 0.605 35 H 0.056 0.944 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.633 -12.538 3.446 14.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.141 4.141 3 Si 0.728 3.272 4 H -0.184 1.184 5 H -0.198 1.198 6 H -0.202 1.202 7 C -0.490 4.490 8 H 0.097 0.903 9 C 0.108 3.892 10 C -0.187 4.187 11 C -0.125 4.125 12 C -0.257 4.257 13 C -0.055 4.055 14 C -0.171 4.171 15 C -0.084 4.084 16 C -0.087 4.087 17 N -0.227 5.227 18 C -0.101 4.101 19 C 0.262 3.738 20 N -0.427 5.427 21 O -0.404 6.404 22 C -0.034 4.034 23 H 0.088 0.912 24 H 0.134 0.866 25 H 0.104 0.896 26 H 0.101 0.899 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.075 0.925 31 H 0.119 0.881 32 H 0.121 0.879 33 H 0.226 0.774 34 H 0.225 0.775 35 H 0.074 0.926 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.250 -11.603 3.118 13.543 hybrid contribution -0.197 0.086 0.881 0.907 sum 6.053 -11.517 4.000 13.612 Atomic orbital electron populations 1.69854 1.07551 1.28813 1.35934 1.25891 0.94656 1.01134 0.92409 0.86340 0.81076 0.81338 0.78414 1.18417 1.19849 1.20152 1.19579 0.97894 0.91021 1.40481 0.90299 1.17536 0.91284 0.91445 0.88929 1.21226 0.99565 0.96606 1.01284 1.20555 0.98672 0.93355 0.99922 1.20168 1.01391 0.96214 1.07959 1.18879 0.96077 0.92328 0.98217 1.19303 1.00505 0.92646 1.04630 1.20111 0.96478 0.94507 0.97258 1.22500 1.00706 0.91471 0.94029 1.62759 1.24293 1.01540 1.34128 1.22430 0.99775 0.95266 0.92646 1.22544 0.84204 0.80879 0.86201 1.44164 1.42911 1.23788 1.31794 1.90752 1.34106 1.46130 1.69374 1.21010 0.87614 0.96504 0.98303 0.91150 0.86628 0.89625 0.89876 0.92680 0.91338 0.91192 0.92521 0.88063 0.87881 0.77372 0.77514 0.92587 0.91602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.27 10.97 55.55 0.61 -20.66 16 2 C 0.08 1.96 5.14 -17.34 -0.09 1.87 16 3 Si 0.90 19.16 29.59 -169.99 -5.03 14.13 16 4 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 5 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 6 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 7 C -0.46 -12.42 8.12 -37.74 -0.31 -12.72 16 8 H 0.08 2.05 6.99 -52.49 -0.37 1.68 16 9 C 0.11 3.04 5.58 -106.74 -0.60 2.44 16 10 C -0.17 -4.56 8.68 -38.94 -0.34 -4.90 16 11 C -0.11 -2.65 10.02 -39.74 -0.40 -3.05 16 12 C -0.24 -5.68 9.65 -39.17 -0.38 -6.05 16 13 C -0.05 -1.31 5.79 -104.66 -0.61 -1.91 16 14 C -0.17 -4.30 5.83 -103.91 -0.61 -4.90 16 15 C -0.05 -1.02 4.94 -27.95 -0.14 -1.16 16 16 C 0.04 0.76 4.83 -3.73 -0.02 0.75 16 17 N -0.51 -8.85 4.90 -237.63 -1.16 -10.01 16 18 C 0.03 0.38 5.82 -4.98 -0.03 0.35 16 19 C 0.48 6.27 7.44 -10.99 -0.08 6.18 16 20 N -0.86 -7.04 8.87 31.22 0.28 -6.76 16 21 O -0.53 -9.71 12.50 5.56 0.07 -9.64 16 22 C 0.09 1.83 5.00 -5.15 -0.03 1.81 16 23 H 0.28 6.75 8.30 -40.82 -0.34 6.41 16 24 H 0.12 3.23 6.19 -52.48 -0.32 2.90 16 25 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 26 H 0.08 1.77 8.06 -52.49 -0.42 1.35 16 27 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.07 1.55 7.34 -51.93 -0.38 1.17 16 29 H 0.07 1.50 5.61 -51.93 -0.29 1.21 16 30 H 0.06 0.93 8.03 -51.93 -0.42 0.51 16 31 H 0.10 0.99 8.12 -51.93 -0.42 0.57 16 32 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.40 1.82 8.83 -40.82 -0.36 1.46 16 34 H 0.39 3.01 8.93 -40.82 -0.36 2.65 16 35 H 0.06 1.17 5.79 -51.93 -0.30 0.87 16 36 H 0.07 1.18 8.13 -51.93 -0.42 0.75 16 LS Contribution 289.64 15.07 4.36 4.36 Total: -1.00 -32.27 289.64 -8.96 -41.23 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -4.48 Total: 8.63 kcal Atomic # 6 Polarization: -17.69 SS G_CDS: -3.61 Total: -21.30 kcal Atomic # 7 Polarization: -37.15 SS G_CDS: -0.28 Total: -37.43 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.07 Total: -9.64 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.03 Total: 14.13 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -32.27 -8.96 -41.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599685527.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.291 kcal (2) G-P(sol) polarization free energy of solvation -32.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds