Wall clock time and date at job start Mon Mar 30 2020 05:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86810 * 120.00028 * 2 1 4 4 H 1.48495 * 109.47130 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46934 * 299.99908 * 3 2 1 6 6 H 1.48497 * 109.46797 * 59.99674 * 3 2 1 7 7 C 1.39945 * 120.00237 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00524 * 197.10016 * 7 2 1 9 9 C 1.41397 * 119.99561 * 17.38714 * 7 2 1 10 10 C 1.40563 * 120.08400 * 25.17413 * 9 7 2 11 11 C 1.37599 * 119.54533 * 179.85037 * 10 9 7 12 12 C 1.38443 * 120.13700 * 0.61174 * 11 10 9 13 13 C 1.39151 * 120.91723 * 359.67316 * 12 11 10 14 14 C 1.37247 * 119.86408 * 359.84784 * 13 12 11 15 15 C 1.50684 * 121.80091 * 180.60963 * 14 13 12 16 16 C 1.52891 * 109.98768 * 343.03597 * 15 14 13 17 17 N 1.47177 * 108.47015 * 50.24862 * 16 15 14 18 18 C 1.46901 * 110.99795 * 165.52967 * 17 16 15 19 19 C 1.50698 * 109.47051 * 56.92555 * 18 17 16 20 20 N 1.34778 * 119.99574 * 179.97438 * 19 18 17 21 21 O 1.21274 * 120.00254 * 0.02562 * 19 18 17 22 22 C 1.46613 * 110.23366 * 288.94127 * 17 16 15 23 23 H 0.96998 * 119.99646 * 0.02562 * 1 2 3 24 24 H 1.08003 * 120.22687 * 0.12999 * 10 9 7 25 25 H 1.07996 * 119.93320 * 180.32523 * 11 10 9 26 26 H 1.07989 * 119.53916 * 179.65077 * 12 11 10 27 27 H 1.09002 * 109.38647 * 103.19613 * 15 14 13 28 28 H 1.08995 * 109.38151 * 222.87574 * 15 14 13 29 29 H 1.09001 * 109.63678 * 290.55342 * 16 15 14 30 30 H 1.09001 * 109.63923 * 169.93738 * 16 15 14 31 31 H 1.09002 * 109.46607 * 176.92733 * 18 17 16 32 32 H 1.08996 * 109.46938 * 296.92073 * 18 17 16 33 33 H 0.97002 * 119.99974 * 0.02562 * 20 19 18 34 34 H 0.96998 * 119.99806 * 179.97438 * 20 19 18 35 35 H 1.08998 * 109.26537 * 292.29514 * 22 17 16 36 36 H 1.08996 * 109.26442 * 172.84066 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.7023 1.3465 0.0006 5 1 1.8835 2.3965 -1.2125 6 1 1.8835 2.3965 1.2125 7 6 2.0080 -1.2119 0.0005 8 1 3.0522 -1.2325 0.2755 9 6 1.3495 -2.4086 -0.3649 10 6 0.2237 -2.3650 -1.2054 11 6 -0.4068 -3.5365 -1.5565 12 6 0.0583 -4.7479 -1.0738 13 6 1.1680 -4.8051 -0.2361 14 6 1.8171 -3.6490 0.1182 15 6 3.0306 -3.6614 1.0114 16 6 3.1255 -4.9993 1.7455 17 7 2.9974 -6.0830 0.7580 18 6 3.4169 -7.3692 1.3306 19 6 2.6025 -7.6590 2.5649 20 7 2.8145 -8.7934 3.2611 21 8 1.7556 -6.8720 2.9313 22 6 1.6207 -6.1541 0.2588 23 1 -0.4849 0.8401 -0.0004 24 1 -0.1412 -1.4187 -1.5768 25 1 -1.2691 -3.5107 -2.2062 26 1 -0.4473 -5.6609 -1.3510 27 1 3.9261 -3.5160 0.4072 28 1 2.9522 -2.8540 1.7394 29 1 2.3210 -5.0734 2.4772 30 1 4.0898 -5.0738 2.2480 31 1 3.2609 -8.1611 0.5980 32 1 4.4733 -7.3218 1.5950 33 1 3.4916 -9.4231 2.9678 34 1 2.2906 -8.9798 4.0558 35 1 0.9627 -6.4813 1.0638 36 1 1.5716 -6.8725 -0.5595 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599685527.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:23 Heat of formation + Delta-G solvation = -39.440280 kcal Electronic energy + Delta-G solvation = -19484.344874 eV Core-core repulsion = 16545.584033 eV Total energy + Delta-G solvation = -2938.760841 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.33910 -39.82116 -37.42273 -35.47236 -34.66880 -33.53529 -32.05036 -30.32494 -28.12994 -26.98592 -24.81829 -23.76362 -22.30226 -21.54864 -20.20402 -18.82952 -18.18236 -17.75022 -17.24734 -16.66273 -16.25802 -15.96410 -15.78982 -15.47997 -14.99460 -14.70608 -14.46639 -14.07657 -13.42186 -13.41100 -13.09941 -12.98733 -12.74236 -12.59660 -12.40249 -12.22632 -12.01660 -11.80536 -11.49441 -11.14362 -11.02505 -10.90373 -10.54775 -9.31042 -9.09728 -8.86006 -8.57912 -6.27531 1.00488 1.14519 1.38039 1.51930 1.54064 1.65679 2.22570 2.70123 2.76275 3.01302 3.73531 4.05945 4.11449 4.16728 4.43442 4.50755 4.59482 4.62672 4.72407 4.75073 4.82213 4.86577 5.07425 5.14902 5.25047 5.34089 5.39836 5.55610 5.81188 5.91864 5.99082 6.04519 6.15733 6.22914 6.26127 6.46931 6.56537 6.76355 7.01111 7.12462 7.42734 8.38871 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.029200 B = 0.005693 C = 0.005092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.682369 B = 4916.924903 C = 5497.896534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.032 3.968 3 Si 0.980 3.020 4 H -0.255 1.255 5 H -0.266 1.266 6 H -0.268 1.268 7 C -0.490 4.490 8 H 0.078 0.922 9 C 0.077 3.923 10 C -0.199 4.199 11 C -0.114 4.114 12 C -0.241 4.241 13 C -0.066 4.066 14 C -0.189 4.189 15 C -0.043 4.043 16 C 0.052 3.948 17 N -0.512 5.512 18 C 0.030 3.970 19 C 0.476 3.524 20 N -0.836 5.836 21 O -0.588 6.588 22 C 0.102 3.898 23 H 0.285 0.715 24 H 0.097 0.903 25 H 0.107 0.893 26 H 0.113 0.887 27 H 0.057 0.943 28 H 0.050 0.950 29 H 0.045 0.955 30 H 0.086 0.914 31 H 0.134 0.866 32 H 0.137 0.863 33 H 0.419 0.581 34 H 0.401 0.599 35 H 0.046 0.954 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.379 -14.576 3.670 17.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.181 4.181 3 Si 0.801 3.199 4 H -0.179 1.179 5 H -0.190 1.190 6 H -0.193 1.193 7 C -0.519 4.519 8 H 0.096 0.904 9 C 0.075 3.925 10 C -0.218 4.218 11 C -0.132 4.132 12 C -0.261 4.261 13 C -0.066 4.066 14 C -0.191 4.191 15 C -0.080 4.080 16 C -0.075 4.075 17 N -0.234 5.234 18 C -0.101 4.101 19 C 0.261 3.739 20 N -0.400 5.400 21 O -0.469 6.469 22 C -0.026 4.026 23 H 0.095 0.905 24 H 0.115 0.885 25 H 0.125 0.875 26 H 0.131 0.869 27 H 0.076 0.924 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.105 0.895 31 H 0.152 0.848 32 H 0.155 0.845 33 H 0.251 0.749 34 H 0.232 0.768 35 H 0.064 0.936 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 8.032 -13.725 3.350 16.251 hybrid contribution -0.756 0.535 0.831 1.245 sum 7.276 -13.190 4.181 15.633 Atomic orbital electron populations 1.69923 1.09141 1.30156 1.36572 1.26785 0.95423 1.04552 0.91372 0.85194 0.79596 0.76350 0.78762 1.17887 1.19034 1.19260 1.19800 0.98076 0.92068 1.41997 0.90352 1.17975 0.92012 0.92895 0.89657 1.21213 1.00879 0.96800 1.02941 1.20844 0.99125 0.93193 1.00087 1.20580 1.01350 0.96855 1.07301 1.19455 0.95641 0.94162 0.97380 1.19775 1.01749 0.92580 1.04969 1.20064 0.95179 0.96229 0.96565 1.22286 1.01369 0.90485 0.93384 1.62662 1.22568 1.03699 1.34424 1.22662 1.01134 0.93317 0.92970 1.22605 0.83490 0.81263 0.86581 1.43885 1.42630 1.22512 1.31000 1.90752 1.36784 1.48413 1.70940 1.20903 0.88894 0.94128 0.98647 0.90463 0.88456 0.87505 0.86925 0.92426 0.93154 0.93678 0.89520 0.84832 0.84494 0.74870 0.76830 0.93592 0.89115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.19 10.97 21.83 0.24 -45.95 16 2 C 0.03 1.72 5.14 85.26 0.44 2.16 16 3 Si 0.98 40.12 29.59 68.60 2.03 42.15 16 4 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 5 H -0.27 -10.45 7.11 99.48 0.71 -9.75 16 6 H -0.27 -10.51 7.11 99.48 0.71 -9.81 16 7 C -0.49 -27.58 8.12 23.46 0.19 -27.39 16 8 H 0.08 4.24 6.99 -2.91 -0.02 4.22 16 9 C 0.08 4.42 5.58 -21.24 -0.12 4.30 16 10 C -0.20 -11.32 8.68 22.69 0.20 -11.13 16 11 C -0.11 -5.79 10.02 22.17 0.22 -5.57 16 12 C -0.24 -11.43 9.65 22.54 0.22 -11.22 16 13 C -0.07 -3.15 5.79 -19.89 -0.12 -3.27 16 14 C -0.19 -9.86 5.83 -19.40 -0.11 -9.97 16 15 C -0.04 -1.93 4.94 29.81 0.15 -1.78 16 16 C 0.05 1.94 4.83 86.21 0.42 2.36 16 17 N -0.51 -16.64 4.90 -905.71 -4.44 -21.07 16 18 C 0.03 0.61 5.82 85.56 0.50 1.11 16 19 C 0.48 11.10 7.44 87.66 0.65 11.76 16 20 N -0.84 -10.64 8.87 -173.54 -1.54 -12.18 16 21 O -0.59 -21.06 12.50 -3.01 -0.04 -21.10 16 22 C 0.10 3.83 5.00 85.60 0.43 4.26 16 23 H 0.28 14.31 8.30 -92.71 -0.77 13.54 16 24 H 0.10 5.77 6.19 -2.91 -0.02 5.75 16 25 H 0.11 4.79 8.06 -2.91 -0.02 4.77 16 26 H 0.11 4.58 8.06 -2.92 -0.02 4.55 16 27 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 28 H 0.05 2.38 7.34 -2.39 -0.02 2.36 16 29 H 0.05 1.94 5.61 -2.39 -0.01 1.93 16 30 H 0.09 2.65 8.03 -2.39 -0.02 2.63 16 31 H 0.13 1.88 8.12 -2.39 -0.02 1.86 16 32 H 0.14 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.42 1.90 8.83 -92.71 -0.82 1.08 16 34 H 0.40 4.92 8.93 -92.71 -0.83 4.10 16 35 H 0.05 1.87 5.79 -2.39 -0.01 1.86 16 36 H 0.09 2.94 8.13 -2.39 -0.02 2.92 16 Total: -1.00 -74.38 289.64 -1.21 -75.59 By element: Atomic # 1 Polarization: 27.47 SS G_CDS: -0.52 Total: 26.95 kcal Atomic # 6 Polarization: -47.44 SS G_CDS: 3.06 Total: -44.38 kcal Atomic # 7 Polarization: -73.47 SS G_CDS: -5.74 Total: -79.20 kcal Atomic # 8 Polarization: -21.06 SS G_CDS: -0.04 Total: -21.10 kcal Atomic # 14 Polarization: 40.12 SS G_CDS: 2.03 Total: 42.15 kcal Total: -74.38 -1.21 -75.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599685527.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.148 kcal (2) G-P(sol) polarization free energy of solvation -74.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds