Wall clock time and date at job start Mon Mar 30 2020 04:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.46717 * 2 1 4 4 C 1.50701 * 109.46887 * 240.00593 * 2 1 3 5 5 H 1.08005 * 119.99749 * 268.26653 * 4 2 1 6 6 C 1.37877 * 120.00205 * 88.26921 * 4 2 1 7 7 N 1.31510 * 120.00053 * 353.33882 * 6 4 2 8 8 Si 1.86797 * 119.99975 * 173.33937 * 6 4 2 9 9 H 1.48497 * 109.47554 * 89.99866 * 8 6 4 10 10 H 1.48505 * 109.47178 * 330.00030 * 8 6 4 11 11 H 1.48504 * 109.47215 * 210.00259 * 8 6 4 12 12 N 1.46499 * 109.47225 * 120.00494 * 2 1 3 13 13 N 1.39502 * 119.10166 * 59.72625 * 12 2 1 14 14 C 1.29960 * 122.65768 * 179.72319 * 13 12 2 15 15 C 1.46346 * 119.98079 * 0.54981 * 14 13 12 16 16 C 1.39432 * 121.83036 * 179.70423 * 15 14 13 17 17 C 1.38324 * 119.38058 * 180.02562 * 16 15 14 18 18 O 1.35768 * 119.68612 * 180.02562 * 17 16 15 19 19 C 1.39469 * 120.62584 * 359.97438 * 17 16 15 20 20 C 1.36560 * 120.78836 * 0.04096 * 19 17 16 21 21 C 1.39521 * 119.73064 * 359.95809 * 20 19 17 22 22 C 1.34921 * 119.09609 * 240.00113 * 12 2 1 23 23 O 1.21827 * 120.61128 * 359.97438 * 22 12 2 24 24 H 1.09001 * 109.46854 * 294.64267 * 1 2 3 25 25 H 1.08992 * 109.47319 * 54.64808 * 1 2 3 26 26 H 1.09002 * 109.46525 * 174.64559 * 1 2 3 27 27 H 0.97000 * 119.99925 * 354.59792 * 7 6 4 28 28 H 1.08000 * 120.01082 * 180.27724 * 14 13 12 29 29 H 1.08007 * 120.30938 * 0.04523 * 16 15 14 30 30 H 0.96698 * 114.00319 * 90.00678 * 18 17 16 31 31 H 1.08003 * 119.60609 * 180.02562 * 19 17 16 32 32 H 1.07992 * 120.13109 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.2390 -1.7698 -1.1959 6 6 2.2281 -0.0076 -2.4006 7 7 1.8544 1.2506 -2.4823 8 14 3.0242 -0.8428 -3.8696 9 1 1.9740 -1.4683 -4.7127 10 1 3.9654 -1.8886 -3.3944 11 1 3.7664 0.1645 -4.6695 12 7 2.0184 -0.6907 1.1961 13 7 1.6652 -2.0246 1.4010 14 6 2.0636 -2.7048 2.4343 15 6 2.9081 -2.0695 3.4467 16 6 3.3523 -2.7609 4.5730 17 6 4.1484 -2.1104 5.4985 18 8 4.5848 -2.7779 6.5972 19 6 4.5078 -0.7757 5.3131 20 6 4.0816 -0.0829 4.2161 21 6 3.2777 -0.7157 3.2674 22 6 2.7928 -0.0176 2.0722 23 8 3.0842 1.1486 1.8740 24 1 -0.3633 0.4285 0.9341 25 1 -0.3633 0.5946 -0.8381 26 1 -0.3632 -1.0232 -0.0959 27 1 1.3709 1.6616 -1.7486 28 1 1.7679 -3.7373 2.5481 29 1 3.0777 -3.7949 4.7214 30 1 5.4328 -3.2261 6.4742 31 1 5.1304 -0.2840 6.0459 32 1 4.3660 0.9504 4.0833 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601936260.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:57 Heat of formation + Delta-G solvation = -13.016344 kcal Electronic energy + Delta-G solvation = -18925.668850 eV Core-core repulsion = 15852.220743 eV Total energy + Delta-G solvation = -3073.448108 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.095 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.65049 -39.04050 -36.88753 -36.38593 -34.36399 -32.12437 -30.88967 -29.96589 -28.85403 -24.98426 -24.29615 -23.79455 -21.94809 -21.26780 -19.17535 -18.39568 -17.33571 -16.82476 -16.28346 -15.30353 -15.17359 -15.11654 -14.79850 -13.93905 -13.78571 -13.55759 -13.14643 -12.77914 -12.43719 -12.20423 -12.10376 -11.57340 -11.38574 -11.25224 -11.13770 -10.78013 -10.62758 -10.16063 -10.00717 -9.44667 -9.18642 -8.90390 -8.72274 -8.50735 -7.74272 -6.50503 -4.23934 0.58879 0.85495 2.37720 2.86205 2.93288 3.39218 3.43577 3.59379 3.84289 4.07075 4.32611 4.46129 4.55377 4.61580 4.90636 5.18007 5.25118 5.41382 5.62811 5.71103 5.77902 6.13425 6.25965 6.34916 6.38397 6.45558 6.52587 6.61368 6.80748 7.21731 7.30811 7.36191 7.87079 8.24570 8.42255 8.65422 8.69881 9.46300 10.86522 Molecular weight = 260.09amu Principal moments of inertia in cm(-1) A = 0.031546 B = 0.005438 C = 0.005320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.373089 B = 5147.860818 C = 5261.432348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.249 3.751 3 H 0.077 0.923 4 C -0.597 4.597 5 H 0.062 0.938 6 C 0.026 3.974 7 N -0.898 5.898 8 Si 1.074 2.926 9 H -0.285 1.285 10 H -0.288 1.288 11 H -0.282 1.282 12 N -0.390 5.390 13 N -0.190 5.190 14 C 0.057 3.943 15 C -0.037 4.037 16 C -0.132 4.132 17 C 0.127 3.873 18 O -0.498 6.498 19 C -0.151 4.151 20 C -0.039 4.039 21 C -0.136 4.136 22 C 0.515 3.485 23 O -0.530 6.530 24 H 0.020 0.980 25 H 0.062 0.938 26 H 0.054 0.946 27 H 0.272 0.728 28 H 0.187 0.813 29 H 0.142 0.858 30 H 0.393 0.607 31 H 0.135 0.865 32 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.055 -9.122 14.611 17.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.151 3.849 3 H 0.095 0.905 4 C -0.635 4.635 5 H 0.080 0.920 6 C -0.180 4.180 7 N -0.533 5.533 8 Si 0.901 3.099 9 H -0.212 1.212 10 H -0.215 1.215 11 H -0.207 1.207 12 N -0.208 5.208 13 N 0.001 4.999 14 C -0.148 4.148 15 C -0.042 4.042 16 C -0.153 4.153 17 C 0.082 3.918 18 O -0.309 6.309 19 C -0.171 4.171 20 C -0.058 4.058 21 C -0.142 4.142 22 C 0.306 3.694 23 O -0.407 6.407 24 H 0.039 0.961 25 H 0.080 0.920 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.204 0.796 29 H 0.160 0.840 30 H 0.250 0.750 31 H 0.153 0.847 32 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 3.692 -7.897 12.279 15.059 hybrid contribution 0.383 -0.432 2.185 2.260 sum 4.075 -8.329 14.464 17.181 Atomic orbital electron populations 1.22149 0.97661 1.01376 0.98904 1.19485 0.91299 0.93914 0.80222 0.90497 1.22069 1.49049 0.97260 0.95134 0.91975 1.25923 0.95660 0.95442 1.01003 1.70763 1.35212 1.12222 1.35098 0.83483 0.76409 0.75091 0.74884 1.21179 1.21460 1.20725 1.50267 1.43039 1.05174 1.22359 1.74416 1.14311 0.93660 1.17526 1.24869 0.98718 1.00470 0.90697 1.19719 0.96478 0.92741 0.95213 1.21347 1.00330 1.00739 0.92835 1.18554 0.96090 0.90871 0.86283 1.84775 1.42580 1.69757 1.33796 1.21195 1.02688 0.94536 0.98638 1.20731 0.93263 1.00454 0.91318 1.20344 1.02316 0.94126 0.97430 1.18591 0.80185 0.87170 0.83500 1.90845 1.57917 1.15686 1.76228 0.96139 0.91955 0.92666 0.91678 0.79602 0.83992 0.75020 0.84693 0.83937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.35 9.16 37.16 0.34 -3.01 16 2 C 0.25 6.53 2.31 -69.08 -0.16 6.37 16 3 H 0.08 2.25 5.69 -51.93 -0.30 1.95 16 4 C -0.60 -16.73 8.40 -34.44 -0.29 -17.02 16 5 H 0.06 1.76 7.68 -52.48 -0.40 1.36 16 6 C 0.03 0.73 5.45 -17.82 -0.10 0.63 16 7 N -0.90 -26.80 13.55 55.43 0.75 -26.05 16 8 Si 1.07 25.08 29.91 -169.99 -5.08 20.00 16 9 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 10 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 12 N -0.39 -9.21 3.28 -56.18 -0.18 -9.39 16 13 N -0.19 -3.85 10.65 31.92 0.34 -3.51 16 14 C 0.06 0.86 11.37 -15.08 -0.17 0.69 16 15 C -0.04 -0.56 5.88 -104.96 -0.62 -1.17 16 16 C -0.13 -1.50 9.80 -39.11 -0.38 -1.89 16 17 C 0.13 1.40 6.70 -39.09 -0.26 1.14 16 18 O -0.50 -4.40 13.48 -19.01 -0.26 -4.65 16 19 C -0.15 -1.77 9.90 -39.73 -0.39 -2.16 16 20 C -0.04 -0.58 9.61 -39.71 -0.38 -0.96 16 21 C -0.14 -2.43 5.90 -104.79 -0.62 -3.05 16 22 C 0.51 11.78 7.69 -12.79 -0.10 11.68 16 23 O -0.53 -13.60 15.86 5.08 0.08 -13.52 16 24 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.06 1.49 7.60 -51.93 -0.39 1.09 16 26 H 0.05 1.25 8.09 -51.93 -0.42 0.83 16 27 H 0.27 8.10 6.32 -40.82 -0.26 7.84 16 28 H 0.19 1.91 8.06 -52.49 -0.42 1.48 16 29 H 0.14 1.19 8.06 -52.48 -0.42 0.77 16 30 H 0.39 1.50 9.06 45.56 0.41 1.92 16 31 H 0.14 1.24 8.06 -52.48 -0.42 0.81 16 32 H 0.14 2.08 7.79 -52.49 -0.41 1.67 16 LS Contribution 284.74 15.07 4.29 4.29 Total: -1.00 -34.61 284.74 -5.45 -40.05 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: -2.25 Total: 1.52 kcal Atomic # 6 Polarization: -5.61 SS G_CDS: -3.13 Total: -8.74 kcal Atomic # 7 Polarization: -39.86 SS G_CDS: 0.91 Total: -38.95 kcal Atomic # 8 Polarization: -18.00 SS G_CDS: -0.18 Total: -18.17 kcal Atomic # 14 Polarization: 25.08 SS G_CDS: -5.08 Total: 20.00 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -34.61 -5.45 -40.05 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601936260.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.036 kcal (2) G-P(sol) polarization free energy of solvation -34.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds