Wall clock time and date at job start Mon Mar 30 2020 04:23:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.46717 * 2 1 4 4 C 1.50701 * 109.46887 * 240.00593 * 2 1 3 5 5 H 1.08005 * 119.99749 * 268.26653 * 4 2 1 6 6 C 1.37877 * 120.00205 * 88.26921 * 4 2 1 7 7 N 1.31510 * 120.00053 * 353.33882 * 6 4 2 8 8 Si 1.86797 * 119.99975 * 173.33937 * 6 4 2 9 9 H 1.48497 * 109.47554 * 89.99866 * 8 6 4 10 10 H 1.48505 * 109.47178 * 330.00030 * 8 6 4 11 11 H 1.48504 * 109.47215 * 210.00259 * 8 6 4 12 12 N 1.46499 * 109.47225 * 120.00494 * 2 1 3 13 13 N 1.39502 * 119.10166 * 59.72625 * 12 2 1 14 14 C 1.29960 * 122.65768 * 179.72319 * 13 12 2 15 15 C 1.46346 * 119.98079 * 0.54981 * 14 13 12 16 16 C 1.39432 * 121.83036 * 179.70423 * 15 14 13 17 17 C 1.38324 * 119.38058 * 180.02562 * 16 15 14 18 18 O 1.35768 * 119.68612 * 180.02562 * 17 16 15 19 19 C 1.39469 * 120.62584 * 359.97438 * 17 16 15 20 20 C 1.36560 * 120.78836 * 0.04096 * 19 17 16 21 21 C 1.39521 * 119.73064 * 359.95809 * 20 19 17 22 22 C 1.34921 * 119.09609 * 240.00113 * 12 2 1 23 23 O 1.21827 * 120.61128 * 359.97438 * 22 12 2 24 24 H 1.09001 * 109.46854 * 294.64267 * 1 2 3 25 25 H 1.08992 * 109.47319 * 54.64808 * 1 2 3 26 26 H 1.09002 * 109.46525 * 174.64559 * 1 2 3 27 27 H 0.97000 * 119.99925 * 354.59792 * 7 6 4 28 28 H 1.08000 * 120.01082 * 180.27724 * 14 13 12 29 29 H 1.08007 * 120.30938 * 0.04523 * 16 15 14 30 30 H 0.96698 * 114.00319 * 90.00678 * 18 17 16 31 31 H 1.08003 * 119.60609 * 180.02562 * 19 17 16 32 32 H 1.07992 * 120.13109 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.2390 -1.7698 -1.1959 6 6 2.2281 -0.0076 -2.4006 7 7 1.8544 1.2506 -2.4823 8 14 3.0242 -0.8428 -3.8696 9 1 1.9740 -1.4683 -4.7127 10 1 3.9654 -1.8886 -3.3944 11 1 3.7664 0.1645 -4.6695 12 7 2.0184 -0.6907 1.1961 13 7 1.6652 -2.0246 1.4010 14 6 2.0636 -2.7048 2.4343 15 6 2.9081 -2.0695 3.4467 16 6 3.3523 -2.7609 4.5730 17 6 4.1484 -2.1104 5.4985 18 8 4.5848 -2.7779 6.5972 19 6 4.5078 -0.7757 5.3131 20 6 4.0816 -0.0829 4.2161 21 6 3.2777 -0.7157 3.2674 22 6 2.7928 -0.0176 2.0722 23 8 3.0842 1.1486 1.8740 24 1 -0.3633 0.4285 0.9341 25 1 -0.3633 0.5946 -0.8381 26 1 -0.3632 -1.0232 -0.0959 27 1 1.3709 1.6616 -1.7486 28 1 1.7679 -3.7373 2.5481 29 1 3.0777 -3.7949 4.7214 30 1 5.4328 -3.2261 6.4742 31 1 5.1304 -0.2840 6.0459 32 1 4.3660 0.9504 4.0833 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601936260.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:56 Heat of formation + Delta-G solvation = -39.632715 kcal Electronic energy + Delta-G solvation = -18926.823023 eV Core-core repulsion = 15852.220743 eV Total energy + Delta-G solvation = -3074.602280 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.095 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.00210 -40.20420 -38.29486 -37.69021 -36.12394 -33.79646 -32.22600 -31.25652 -30.46718 -27.07215 -25.58709 -25.13377 -23.24345 -22.93790 -20.28309 -19.91663 -18.92757 -18.19426 -17.66203 -16.76166 -16.48512 -16.47904 -16.04486 -15.65845 -15.18566 -14.98823 -14.71863 -14.07665 -13.97736 -13.63732 -13.53936 -13.23921 -13.16493 -12.88961 -12.71231 -12.53249 -12.01387 -11.95947 -11.50016 -11.09317 -10.73330 -10.66719 -10.41770 -9.90075 -9.36416 -8.74175 -6.48147 -0.58314 -0.21384 1.09511 1.30573 1.49462 1.60265 1.67030 1.77086 2.50639 2.71604 2.95565 3.07223 3.11643 3.46422 3.57437 3.94133 4.14153 4.28800 4.38340 4.44575 4.55802 4.61231 4.69079 4.82345 4.86658 5.14807 5.17478 5.20608 5.29123 5.43001 5.54567 5.80461 6.11079 6.39763 6.71078 6.80920 7.14555 7.31589 8.62518 Molecular weight = 260.09amu Principal moments of inertia in cm(-1) A = 0.031546 B = 0.005438 C = 0.005320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.373089 B = 5147.860818 C = 5261.432348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.251 3.749 3 H 0.032 0.968 4 C -0.603 4.603 5 H 0.057 0.943 6 C -0.026 4.026 7 N -0.926 5.926 8 Si 1.122 2.878 9 H -0.263 1.263 10 H -0.276 1.276 11 H -0.283 1.283 12 N -0.411 5.411 13 N -0.249 5.249 14 C 0.102 3.898 15 C -0.053 4.053 16 C -0.107 4.107 17 C 0.148 3.852 18 O -0.495 6.495 19 C -0.133 4.133 20 C -0.054 4.054 21 C -0.166 4.166 22 C 0.497 3.503 23 O -0.588 6.588 24 H 0.030 0.970 25 H 0.048 0.952 26 H 0.062 0.938 27 H 0.258 0.742 28 H 0.247 0.753 29 H 0.188 0.812 30 H 0.421 0.579 31 H 0.165 0.835 32 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.082 -13.150 17.384 22.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.151 3.849 3 H 0.050 0.950 4 C -0.641 4.641 5 H 0.075 0.925 6 C -0.225 4.225 7 N -0.562 5.562 8 Si 0.942 3.058 9 H -0.188 1.188 10 H -0.201 1.201 11 H -0.208 1.208 12 N -0.227 5.227 13 N -0.056 5.056 14 C -0.102 4.102 15 C -0.057 4.057 16 C -0.128 4.128 17 C 0.103 3.897 18 O -0.310 6.310 19 C -0.153 4.153 20 C -0.074 4.074 21 C -0.172 4.172 22 C 0.290 3.710 23 O -0.469 6.469 24 H 0.049 0.951 25 H 0.067 0.933 26 H 0.081 0.919 27 H 0.068 0.932 28 H 0.262 0.738 29 H 0.205 0.795 30 H 0.283 0.717 31 H 0.183 0.817 32 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 4.718 -11.980 15.083 19.831 hybrid contribution 0.187 0.622 1.742 1.859 sum 4.905 -11.357 16.825 20.884 Atomic orbital electron populations 1.21915 0.96066 1.01521 0.98820 1.19068 0.92430 0.92007 0.81392 0.94996 1.22261 1.48795 0.97037 0.96008 0.92495 1.27426 0.95660 0.95349 1.04059 1.70869 1.37065 1.13413 1.34868 0.82891 0.76328 0.74487 0.72044 1.18830 1.20088 1.20817 1.49789 1.44014 1.07080 1.21848 1.74447 1.18096 0.92046 1.21008 1.26003 0.94506 1.01690 0.88049 1.19826 0.97428 0.91600 0.96865 1.21729 0.98250 1.02225 0.90573 1.18566 0.94652 0.90435 0.86074 1.84734 1.44448 1.69588 1.32233 1.21501 1.01369 0.95020 0.97380 1.20742 0.93871 1.00452 0.92297 1.20238 1.04809 0.95805 0.96380 1.19437 0.79709 0.86962 0.84907 1.90778 1.60261 1.18055 1.77848 0.95119 0.93259 0.91884 0.93218 0.73757 0.79492 0.71734 0.81706 0.85199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.20 9.16 71.98 0.66 -5.54 16 2 C 0.25 14.10 2.31 44.25 0.10 14.20 16 3 H 0.03 2.07 5.69 -2.39 -0.01 2.05 16 4 C -0.60 -35.33 8.40 25.60 0.21 -35.12 16 5 H 0.06 3.32 7.68 -2.91 -0.02 3.29 16 6 C -0.03 -1.51 5.45 84.66 0.46 -1.05 16 7 N -0.93 -58.28 13.55 21.45 0.29 -57.99 16 8 Si 1.12 51.39 29.91 68.60 2.05 53.44 16 9 H -0.26 -11.05 7.11 99.48 0.71 -10.35 16 10 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 11 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 12 N -0.41 -20.40 3.28 -449.75 -1.47 -21.88 16 13 N -0.25 -10.02 10.65 -52.92 -0.56 -10.58 16 14 C 0.10 2.78 11.37 87.08 0.99 3.77 16 15 C -0.05 -1.42 5.88 -20.08 -0.12 -1.54 16 16 C -0.11 -1.81 9.80 22.58 0.22 -1.59 16 17 C 0.15 2.43 6.70 22.59 0.15 2.58 16 18 O -0.50 -5.33 13.48 -90.95 -1.23 -6.56 16 19 C -0.13 -2.64 9.90 22.17 0.22 -2.42 16 20 C -0.05 -1.60 9.61 22.19 0.21 -1.38 16 21 C -0.17 -5.98 5.90 -19.97 -0.12 -6.09 16 22 C 0.50 24.23 7.69 86.42 0.66 24.89 16 23 O -0.59 -33.18 15.86 -4.76 -0.08 -33.26 16 24 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.05 2.51 7.60 -2.39 -0.02 2.49 16 26 H 0.06 2.96 8.09 -2.39 -0.02 2.95 16 27 H 0.26 16.56 6.32 -92.71 -0.59 15.97 16 28 H 0.25 3.48 8.06 -2.91 -0.02 3.45 16 29 H 0.19 1.54 8.06 -2.91 -0.02 1.51 16 30 H 0.42 0.20 9.06 -74.06 -0.67 -0.47 16 31 H 0.17 2.27 8.06 -2.91 -0.02 2.25 16 32 H 0.13 4.03 7.79 -2.91 -0.02 4.00 16 Total: -1.00 -84.29 284.74 3.34 -80.95 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: 0.68 Total: 5.16 kcal Atomic # 6 Polarization: -12.95 SS G_CDS: 3.66 Total: -9.29 kcal Atomic # 7 Polarization: -88.70 SS G_CDS: -1.75 Total: -90.44 kcal Atomic # 8 Polarization: -38.52 SS G_CDS: -1.30 Total: -39.82 kcal Atomic # 14 Polarization: 51.39 SS G_CDS: 2.05 Total: 53.44 kcal Total: -84.29 3.34 -80.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601936260.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.314 kcal (2) G-P(sol) polarization free energy of solvation -84.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds