Wall clock time and date at job start Mon Mar 30 2020 04:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86798 * 120.00415 * 2 1 4 4 H 1.48496 * 109.47300 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46972 * 299.99815 * 3 2 1 6 6 H 1.48502 * 109.47351 * 59.99454 * 3 2 1 7 7 C 1.38953 * 119.99376 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99300 * 180.02562 * 7 2 1 9 9 N 1.37095 * 120.00601 * 0.02562 * 7 2 1 10 10 C 1.34771 * 120.00188 * 179.97438 * 9 7 2 11 11 O 1.21288 * 120.00228 * 0.02562 * 10 9 7 12 12 C 1.50704 * 120.00001 * 179.97438 * 10 9 7 13 13 N 1.46894 * 109.47063 * 179.97438 * 12 10 9 14 14 C 1.48161 * 111.00056 * 190.00336 * 13 12 10 15 15 C 1.52961 * 85.82768 * 223.08372 * 14 13 12 16 16 C 1.48166 * 111.00099 * 90.37145 * 13 12 10 17 17 C 1.52810 * 121.29103 * 148.65983 * 15 14 13 18 18 C 1.53977 * 86.74383 * 150.88615 * 17 15 14 19 19 F 1.39901 * 113.57176 * 89.96020 * 18 17 15 20 20 F 1.39898 * 113.57558 * 220.73638 * 18 17 15 21 21 C 1.52815 * 121.28886 * 257.64325 * 15 14 13 22 22 H 0.96998 * 119.99697 * 0.02562 * 1 2 3 23 23 H 0.97005 * 119.99354 * 359.97438 * 9 7 2 24 24 H 1.09001 * 109.46663 * 59.99847 * 12 10 9 25 25 H 1.08994 * 109.47236 * 300.00120 * 12 10 9 26 26 H 1.08995 * 113.81949 * 108.85668 * 14 13 12 27 27 H 1.08998 * 113.80980 * 337.30391 * 14 13 12 28 28 H 1.09001 * 113.81377 * 22.68625 * 16 13 12 29 29 H 1.08994 * 113.81363 * 251.14796 * 16 13 12 30 30 H 1.09001 * 113.67248 * 36.42365 * 17 15 14 31 31 H 1.08994 * 113.66917 * 265.34983 * 17 15 14 32 32 H 1.08996 * 113.66325 * 94.64788 * 21 15 14 33 33 H 1.08996 * 113.75408 * 323.58536 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.7082 1.3462 0.0006 5 1 1.8895 2.3964 -1.2126 6 1 1.8895 2.3965 1.2124 7 6 2.0087 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9971 -3.5579 0.0005 11 8 3.2100 -3.5580 0.0010 12 6 1.2435 -4.8630 0.0011 13 7 2.1980 -5.9795 0.0004 14 6 1.5075 -7.2683 -0.2394 15 6 2.3975 -7.8242 0.8736 16 6 2.5373 -6.3890 1.3833 17 6 1.9143 -8.9481 1.7893 18 6 3.3922 -9.3612 1.9161 19 9 4.0581 -8.7384 2.9773 20 9 3.5908 -10.7457 1.8872 21 6 3.6252 -8.6771 0.5566 22 1 -0.4849 0.8401 -0.0004 23 1 0.3532 -2.3906 0.0005 24 1 0.6165 -4.9208 -0.8886 25 1 0.6172 -4.9205 0.8913 26 1 1.7082 -7.6994 -1.2201 27 1 0.4470 -7.2526 0.0118 28 1 1.7863 -6.1090 2.1220 29 1 3.5513 -6.1256 1.6840 30 1 1.2948 -9.6888 1.2837 31 1 1.4772 -8.5944 2.7230 32 1 4.5529 -8.1071 0.5068 33 1 3.4896 -9.3418 -0.2966 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611180515.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:05 Heat of formation + Delta-G solvation = -72.408310 kcal Electronic energy + Delta-G solvation = -19326.986143 eV Core-core repulsion = 15832.566171 eV Total energy + Delta-G solvation = -3494.419972 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.108 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.90956 -47.25040 -40.66242 -37.97254 -35.58351 -33.83866 -31.22983 -29.22296 -26.59327 -26.24181 -25.23707 -23.45044 -21.43208 -19.23821 -18.56703 -17.89912 -17.50758 -16.69704 -16.50917 -16.07439 -15.34189 -15.08042 -14.81009 -14.32201 -14.09230 -13.75362 -13.70603 -13.49216 -13.19204 -13.02066 -12.70229 -12.24650 -12.19559 -11.55140 -11.29558 -11.17313 -10.97812 -10.71223 -10.59456 -10.56519 -10.33078 -10.20277 -9.49669 -8.74458 -8.17337 -7.94535 -6.40471 -3.81005 3.17257 3.27640 3.31342 3.35152 3.58807 3.81596 3.90053 3.93582 4.12450 4.18457 4.30771 4.82255 4.87690 5.11121 5.18950 5.23892 5.31195 5.36001 5.42751 5.57109 5.62902 5.66474 5.69852 5.79440 5.89970 6.10407 6.27393 6.54341 7.13951 7.56796 8.07968 8.63817 9.20264 9.56421 10.08883 10.77593 Molecular weight = 260.11amu Principal moments of inertia in cm(-1) A = 0.051295 B = 0.003769 C = 0.003657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.732495 B = 7427.762586 C = 7655.568047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.021 3.979 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.297 4.297 8 H 0.103 0.897 9 N -0.568 5.568 10 C 0.446 3.554 11 O -0.575 6.575 12 C 0.009 3.991 13 N -0.446 5.446 14 C 0.020 3.980 15 C -0.112 4.112 16 C 0.037 3.963 17 C -0.153 4.153 18 C 0.253 3.747 19 F -0.178 7.178 20 F -0.195 7.195 21 C -0.132 4.132 22 H 0.270 0.730 23 H 0.391 0.609 24 H 0.088 0.912 25 H 0.058 0.942 26 H 0.093 0.907 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.097 0.903 30 H 0.114 0.886 31 H 0.094 0.906 32 H 0.101 0.899 33 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.699 -17.578 2.222 17.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.180 4.180 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.427 4.427 8 H 0.121 0.879 9 N -0.205 5.205 10 C 0.231 3.769 11 O -0.458 6.458 12 C -0.123 4.123 13 N -0.168 5.168 14 C -0.109 4.109 15 C -0.113 4.113 16 C -0.091 4.091 17 C -0.191 4.191 18 C 0.216 3.784 19 F -0.159 7.159 20 F -0.176 7.176 21 C -0.170 4.170 22 H 0.080 0.920 23 H 0.224 0.776 24 H 0.107 0.893 25 H 0.076 0.924 26 H 0.112 0.888 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.115 0.885 30 H 0.132 0.868 31 H 0.113 0.887 32 H 0.119 0.881 33 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 0.536 -17.179 1.796 17.281 hybrid contribution -0.927 0.656 0.698 1.333 sum -0.391 -16.523 2.494 16.715 Atomic orbital electron populations 1.69619 1.05933 1.27984 1.50992 1.25249 0.95629 0.99677 0.97445 0.85809 0.79737 0.81177 0.77685 1.19219 1.20758 1.20788 1.19751 0.93384 0.82235 1.47307 0.87912 1.41882 1.09125 1.04607 1.64891 1.19688 0.88404 0.84407 0.84392 1.90525 1.13668 1.86969 1.54631 1.22492 0.94732 0.93064 1.01967 1.68428 1.30066 1.00178 1.18160 1.23788 0.96731 0.91538 0.98811 1.22687 0.96979 0.94078 0.97554 1.23742 1.03673 0.89919 0.91776 1.23980 0.93956 0.99057 1.02150 1.22188 0.94547 0.74157 0.87478 1.93029 1.82359 1.81674 1.58791 1.92994 1.96188 1.31615 1.96796 1.23710 1.00358 0.98009 0.94895 0.91981 0.77577 0.89332 0.92385 0.88837 0.90707 0.90650 0.88480 0.86755 0.88715 0.88077 0.86728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.65 13.05 55.50 0.72 -23.93 16 2 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 3 Si 0.93 21.17 29.55 -169.99 -5.02 16.14 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.30 -8.36 9.68 -14.93 -0.14 -8.50 16 8 H 0.10 3.05 7.16 -52.48 -0.38 2.67 16 9 N -0.57 -14.47 5.29 -10.96 -0.06 -14.53 16 10 C 0.45 10.63 7.82 -10.99 -0.09 10.55 16 11 O -0.57 -15.94 16.01 5.55 0.09 -15.85 16 12 C 0.01 0.16 5.28 -4.98 -0.03 0.14 16 13 N -0.45 -7.15 5.64 -244.87 -1.38 -8.54 16 14 C 0.02 0.23 7.72 -3.15 -0.02 0.20 16 15 C -0.11 -1.21 1.24 -154.88 -0.19 -1.40 16 16 C 0.04 0.53 7.72 -3.15 -0.02 0.51 16 17 C -0.15 -1.34 7.64 -26.32 -0.20 -1.54 16 18 C 0.25 2.71 3.27 -25.73 -0.08 2.63 16 19 F -0.18 -2.28 17.39 2.25 0.04 -2.24 16 20 F -0.20 -2.23 17.41 2.25 0.04 -2.19 16 21 C -0.13 -1.34 7.64 -26.32 -0.20 -1.54 16 22 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 23 H 0.39 9.47 7.90 -40.82 -0.32 9.15 16 24 H 0.09 1.38 8.08 -51.93 -0.42 0.96 16 25 H 0.06 0.89 7.39 -51.93 -0.38 0.51 16 26 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.07 0.71 7.92 -51.93 -0.41 0.30 16 28 H 0.08 1.00 7.48 -51.93 -0.39 0.61 16 29 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 30 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 33 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 292.26 15.07 4.40 4.40 Total: -1.00 -32.13 292.26 -6.22 -38.35 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -3.97 Total: 6.87 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: -1.08 Total: 1.52 kcal Atomic # 7 Polarization: -46.28 SS G_CDS: -0.72 Total: -46.99 kcal Atomic # 8 Polarization: -15.94 SS G_CDS: 0.09 Total: -15.85 kcal Atomic # 9 Polarization: -4.51 SS G_CDS: 0.08 Total: -4.44 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -32.13 -6.22 -38.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611180515.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.059 kcal (2) G-P(sol) polarization free energy of solvation -32.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds