Wall clock time and date at job start Mon Mar 30 2020 04:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86798 * 120.00415 * 2 1 4 4 H 1.48496 * 109.47300 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46972 * 299.99815 * 3 2 1 6 6 H 1.48502 * 109.47351 * 59.99454 * 3 2 1 7 7 C 1.38953 * 119.99376 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99300 * 180.02562 * 7 2 1 9 9 N 1.37095 * 120.00601 * 0.02562 * 7 2 1 10 10 C 1.34771 * 120.00188 * 179.97438 * 9 7 2 11 11 O 1.21288 * 120.00228 * 0.02562 * 10 9 7 12 12 C 1.50704 * 120.00001 * 179.97438 * 10 9 7 13 13 N 1.46894 * 109.47063 * 179.97438 * 12 10 9 14 14 C 1.48161 * 111.00056 * 190.00336 * 13 12 10 15 15 C 1.52961 * 85.82768 * 223.08372 * 14 13 12 16 16 C 1.48166 * 111.00099 * 90.37145 * 13 12 10 17 17 C 1.52810 * 121.29103 * 148.65983 * 15 14 13 18 18 C 1.53977 * 86.74383 * 150.88615 * 17 15 14 19 19 F 1.39901 * 113.57176 * 89.96020 * 18 17 15 20 20 F 1.39898 * 113.57558 * 220.73638 * 18 17 15 21 21 C 1.52815 * 121.28886 * 257.64325 * 15 14 13 22 22 H 0.96998 * 119.99697 * 0.02562 * 1 2 3 23 23 H 0.97005 * 119.99354 * 359.97438 * 9 7 2 24 24 H 1.09001 * 109.46663 * 59.99847 * 12 10 9 25 25 H 1.08994 * 109.47236 * 300.00120 * 12 10 9 26 26 H 1.08995 * 113.81949 * 108.85668 * 14 13 12 27 27 H 1.08998 * 113.80980 * 337.30391 * 14 13 12 28 28 H 1.09001 * 113.81377 * 22.68625 * 16 13 12 29 29 H 1.08994 * 113.81363 * 251.14796 * 16 13 12 30 30 H 1.09001 * 113.67248 * 36.42365 * 17 15 14 31 31 H 1.08994 * 113.66917 * 265.34983 * 17 15 14 32 32 H 1.08996 * 113.66325 * 94.64788 * 21 15 14 33 33 H 1.08996 * 113.75408 * 323.58536 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.7082 1.3462 0.0006 5 1 1.8895 2.3964 -1.2126 6 1 1.8895 2.3965 1.2124 7 6 2.0087 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9971 -3.5579 0.0005 11 8 3.2100 -3.5580 0.0010 12 6 1.2435 -4.8630 0.0011 13 7 2.1980 -5.9795 0.0004 14 6 1.5075 -7.2683 -0.2394 15 6 2.3975 -7.8242 0.8736 16 6 2.5373 -6.3890 1.3833 17 6 1.9143 -8.9481 1.7893 18 6 3.3922 -9.3612 1.9161 19 9 4.0581 -8.7384 2.9773 20 9 3.5908 -10.7457 1.8872 21 6 3.6252 -8.6771 0.5566 22 1 -0.4849 0.8401 -0.0004 23 1 0.3532 -2.3906 0.0005 24 1 0.6165 -4.9208 -0.8886 25 1 0.6172 -4.9205 0.8913 26 1 1.7082 -7.6994 -1.2201 27 1 0.4470 -7.2526 0.0118 28 1 1.7863 -6.1090 2.1220 29 1 3.5513 -6.1256 1.6840 30 1 1.2948 -9.6888 1.2837 31 1 1.4772 -8.5944 2.7230 32 1 4.5529 -8.1071 0.5068 33 1 3.4896 -9.3418 -0.2966 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611180515.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:05 Heat of formation + Delta-G solvation = -96.160207 kcal Electronic energy + Delta-G solvation = -19328.016103 eV Core-core repulsion = 15832.566171 eV Total energy + Delta-G solvation = -3495.449931 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.108 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.78912 -48.14117 -41.68541 -39.80318 -36.66166 -35.84835 -33.27241 -30.58423 -27.34133 -27.22930 -27.05055 -24.77561 -22.45692 -21.00093 -19.90023 -19.42929 -18.45089 -17.82499 -17.52385 -17.38790 -16.60976 -16.50809 -16.29351 -15.73844 -15.45819 -15.07910 -14.98231 -14.47691 -14.34492 -14.05491 -13.93814 -13.55201 -13.47395 -13.20741 -12.93846 -12.42263 -12.38334 -12.14049 -12.05707 -11.68316 -11.52480 -11.48762 -11.38074 -10.35998 -10.00408 -9.61458 -8.46883 -5.95335 1.36102 1.41140 1.55323 2.07136 2.28616 2.50956 2.70752 2.89973 3.06363 3.20035 3.27524 3.31536 3.48740 3.92767 4.06548 4.26162 4.28815 4.42240 4.53229 4.56921 4.59943 4.66501 4.76800 4.81108 4.83488 5.06324 5.10508 5.40381 5.43349 5.91058 6.10521 6.61648 7.13978 7.57747 8.14794 8.70872 Molecular weight = 260.11amu Principal moments of inertia in cm(-1) A = 0.051295 B = 0.003769 C = 0.003657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.732495 B = 7427.762586 C = 7655.568047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.012 4.012 3 Si 0.991 3.009 4 H -0.275 1.275 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.333 4.333 8 H 0.075 0.925 9 N -0.576 5.576 10 C 0.440 3.560 11 O -0.621 6.621 12 C 0.024 3.976 13 N -0.484 5.484 14 C 0.032 3.968 15 C -0.103 4.103 16 C 0.027 3.973 17 C -0.133 4.133 18 C 0.240 3.760 19 F -0.196 7.196 20 F -0.199 7.199 21 C -0.132 4.132 22 H 0.278 0.722 23 H 0.396 0.604 24 H 0.111 0.889 25 H 0.083 0.917 26 H 0.108 0.892 27 H 0.102 0.898 28 H 0.084 0.916 29 H 0.064 0.936 30 H 0.146 0.854 31 H 0.102 0.898 32 H 0.082 0.918 33 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.341 -18.674 1.899 18.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.212 4.212 3 Si 0.815 3.185 4 H -0.200 1.200 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.463 4.463 8 H 0.093 0.907 9 N -0.214 5.214 10 C 0.227 3.773 11 O -0.507 6.507 12 C -0.108 4.108 13 N -0.207 5.207 14 C -0.096 4.096 15 C -0.103 4.103 16 C -0.102 4.102 17 C -0.171 4.171 18 C 0.204 3.796 19 F -0.177 7.177 20 F -0.180 7.180 21 C -0.170 4.170 22 H 0.087 0.913 23 H 0.230 0.770 24 H 0.129 0.871 25 H 0.101 0.899 26 H 0.126 0.874 27 H 0.120 0.880 28 H 0.102 0.898 29 H 0.082 0.918 30 H 0.164 0.836 31 H 0.120 0.880 32 H 0.100 0.900 33 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -1.139 -18.295 1.473 18.390 hybrid contribution -0.369 0.955 0.796 1.296 sum -1.507 -17.341 2.269 17.553 Atomic orbital electron populations 1.69670 1.06746 1.29194 1.50554 1.26002 0.96548 1.02276 0.96334 0.84897 0.77961 0.77220 0.78410 1.20022 1.19474 1.19513 1.19673 0.92586 0.84185 1.49859 0.90681 1.41957 1.09281 1.04694 1.65502 1.20922 0.88291 0.86089 0.81958 1.90489 1.16098 1.87987 1.56147 1.22370 0.94395 0.89886 1.04130 1.68369 1.31307 1.01721 1.19321 1.23902 0.97878 0.88140 0.99633 1.22464 0.97471 0.92761 0.97653 1.23746 1.02128 0.92802 0.91500 1.23982 0.92645 0.98262 1.02167 1.22516 0.96073 0.73860 0.87157 1.92994 1.82976 1.82032 1.59710 1.92984 1.96331 1.31874 1.96782 1.23807 0.99425 0.98081 0.95646 0.91301 0.76971 0.87056 0.89931 0.87382 0.88019 0.89753 0.91768 0.83633 0.87960 0.89971 0.84157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.75 13.05 21.66 0.28 -49.47 16 2 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 3 Si 0.99 43.38 29.55 68.60 2.03 45.40 16 4 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 5 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 6 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 7 C -0.33 -19.25 9.68 84.04 0.81 -18.44 16 8 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 9 N -0.58 -29.88 5.29 -306.99 -1.62 -31.51 16 10 C 0.44 21.30 7.82 87.66 0.69 21.98 16 11 O -0.62 -35.76 16.01 -3.06 -0.05 -35.80 16 12 C 0.02 0.79 5.28 85.56 0.45 1.24 16 13 N -0.48 -14.91 5.64 -928.64 -5.24 -20.15 16 14 C 0.03 0.60 7.72 86.05 0.66 1.27 16 15 C -0.10 -1.97 1.24 -52.30 -0.06 -2.04 16 16 C 0.03 0.75 7.72 86.04 0.66 1.42 16 17 C -0.13 -1.87 7.64 30.86 0.24 -1.64 16 18 C 0.24 4.76 3.27 31.24 0.10 4.86 16 19 F -0.20 -5.02 17.39 44.97 0.78 -4.24 16 20 F -0.20 -4.17 17.41 44.97 0.78 -3.39 16 21 C -0.13 -2.47 7.64 30.86 0.24 -2.23 16 22 H 0.28 13.98 8.31 -92.71 -0.77 13.21 16 23 H 0.40 19.28 7.90 -92.70 -0.73 18.55 16 24 H 0.11 3.18 8.08 -2.39 -0.02 3.16 16 25 H 0.08 2.34 7.39 -2.39 -0.02 2.32 16 26 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.10 1.41 7.92 -2.39 -0.02 1.40 16 28 H 0.08 2.14 7.48 -2.39 -0.02 2.13 16 29 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 30 H 0.15 1.22 8.14 -2.39 -0.02 1.21 16 31 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.14 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -71.65 292.26 1.62 -70.03 By element: Atomic # 1 Polarization: 22.46 SS G_CDS: 0.41 Total: 22.87 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: 4.26 Total: 6.25 kcal Atomic # 7 Polarization: -94.54 SS G_CDS: -6.58 Total: -101.13 kcal Atomic # 8 Polarization: -35.76 SS G_CDS: -0.05 Total: -35.80 kcal Atomic # 9 Polarization: -9.19 SS G_CDS: 1.56 Total: -7.62 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.40 kcal Total: -71.65 1.62 -70.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611180515.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.131 kcal (2) G-P(sol) polarization free energy of solvation -71.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds