Wall clock time and date at job start Mon Mar 30 2020 04:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00285 * 2 1 4 4 H 1.48499 * 109.47294 * 239.99672 * 3 2 1 5 5 H 1.48497 * 109.47205 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47173 * 119.99770 * 3 2 1 7 7 C 1.37876 * 119.99596 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99759 * 179.97438 * 7 2 1 9 9 S 1.76201 * 120.00442 * 359.97438 * 7 2 1 10 10 O 1.42108 * 106.39730 * 66.46006 * 9 7 2 11 11 O 1.42097 * 106.40109 * 293.54595 * 9 7 2 12 12 N 1.65595 * 107.22239 * 179.97438 * 9 7 2 13 13 C 1.46500 * 119.99518 * 64.99954 * 12 9 7 14 14 C 1.53010 * 109.46960 * 156.82442 * 13 12 9 15 15 H 1.09000 * 112.95265 * 305.26099 * 14 13 12 16 16 C 1.53932 * 113.76025 * 173.60976 * 14 13 12 17 17 C 1.53927 * 86.34215 * 221.96544 * 16 14 13 18 18 N 1.47956 * 86.18201 * 23.72153 * 17 16 14 19 19 C 1.46905 * 111.00003 * 222.42025 * 18 17 16 20 20 C 1.52999 * 117.49994 * 115.79413 * 19 18 17 21 21 C 1.53001 * 117.50078 * 47.13316 * 19 18 17 22 22 H 0.97003 * 119.99782 * 0.02562 * 1 2 3 23 23 H 0.96994 * 120.00188 * 245.00618 * 12 9 7 24 24 H 1.09004 * 109.47212 * 36.82681 * 13 12 9 25 25 H 1.08999 * 109.47378 * 276.82112 * 13 12 9 26 26 H 1.09002 * 113.73192 * 107.59825 * 16 14 13 27 27 H 1.09006 * 113.73441 * 336.32237 * 16 14 13 28 28 H 1.09004 * 113.76296 * 138.04170 * 17 16 14 29 29 H 1.09008 * 113.75554 * 269.40281 * 17 16 14 30 30 H 1.09003 * 115.54637 * 261.46135 * 19 18 17 31 31 H 1.09009 * 117.49815 * 0.02562 * 20 19 18 32 32 H 1.08998 * 117.50220 * 145.01734 * 20 19 18 33 33 H 1.08992 * 117.50052 * 214.97865 * 21 19 18 34 34 H 1.09003 * 117.49498 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 16 1.1234 -2.7200 0.0019 10 8 0.4508 -2.7961 -1.2476 11 8 0.4517 -2.7944 1.2519 12 7 2.2481 -3.9355 0.0016 13 6 3.1400 -4.1084 1.1509 14 6 3.6469 -5.5515 1.1905 15 1 2.8409 -6.2853 1.1898 16 6 4.7150 -5.8043 2.2697 17 6 5.4488 -6.6421 1.2072 18 7 4.7155 -5.8351 0.2071 19 6 4.2146 -6.6794 -0.8857 20 6 2.6980 -6.7911 -1.0540 21 6 3.4968 -7.9758 -0.5049 22 1 -0.4850 0.8401 -0.0004 23 1 2.3164 -4.5329 -0.7595 24 1 2.5956 -3.8892 2.0695 25 1 3.9868 -3.4283 1.0592 26 1 4.3537 -6.3881 3.1163 27 1 5.2555 -4.9068 2.5708 28 1 6.5274 -6.4855 1.1924 29 1 5.1709 -7.6961 1.2103 30 1 4.8233 -6.6880 -1.7899 31 1 2.0718 -6.2378 -0.3540 32 1 2.3088 -6.8736 -2.0688 33 1 3.6329 -8.8372 -1.1587 34 1 3.3966 -8.2025 0.5566 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691744731.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:00 Heat of formation + Delta-G solvation = -22.464799 kcal Electronic energy + Delta-G solvation = -18279.764087 eV Core-core repulsion = 15341.350215 eV Total energy + Delta-G solvation = -2938.413872 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 260.098 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.77773 -35.65121 -35.14456 -34.10762 -33.88110 -32.99937 -28.24261 -27.19055 -26.06906 -23.35898 -22.02712 -21.74250 -19.22819 -18.71231 -17.35477 -17.01740 -16.24256 -15.65999 -15.20476 -14.72871 -14.41171 -14.28812 -13.89416 -13.32078 -13.01300 -12.44333 -12.21281 -11.92696 -11.76674 -11.51674 -11.22909 -11.15715 -11.03015 -10.82073 -10.59852 -10.57968 -10.24284 -10.22424 -10.13571 -9.96546 -9.18627 -8.96425 -8.73161 -8.38259 -6.64558 -5.25669 2.41724 3.12770 3.16616 3.23065 3.60073 3.84958 4.11286 4.45373 4.50197 4.69675 4.79237 4.81726 4.94816 5.01030 5.24295 5.29279 5.36896 5.51502 5.60180 5.73094 5.82512 5.86907 5.93248 6.00664 6.04084 6.08881 6.29621 6.40731 6.60925 6.91262 7.06692 7.38136 7.97811 8.05363 8.94847 10.29550 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.030259 B = 0.006280 C = 0.005783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.137194 B = 4457.371370 C = 4840.469904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.132 3.868 3 Si 0.920 3.080 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.264 1.264 7 C -1.019 5.019 8 H 0.102 0.898 9 S 2.715 3.285 10 O -1.009 7.009 11 O -1.009 7.009 12 N -1.138 6.138 13 C 0.147 3.853 14 C 0.014 3.986 15 H 0.091 0.909 16 C -0.141 4.141 17 C 0.000 4.000 18 N -0.441 5.441 19 C -0.011 4.011 20 C -0.197 4.197 21 C -0.211 4.211 22 H 0.290 0.710 23 H 0.402 0.598 24 H 0.084 0.916 25 H 0.067 0.933 26 H 0.074 0.926 27 H 0.096 0.904 28 H 0.088 0.912 29 H 0.073 0.927 30 H 0.125 0.875 31 H 0.114 0.886 32 H 0.104 0.896 33 H 0.097 0.903 34 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.939 -12.395 2.253 16.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.085 4.085 3 Si 0.744 3.256 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.189 1.189 7 C -1.153 5.153 8 H 0.121 0.879 9 S 2.814 3.186 10 O -0.999 6.999 11 O -0.999 6.999 12 N -0.894 5.894 13 C 0.019 3.981 14 C -0.097 4.097 15 H 0.108 0.892 16 C -0.180 4.180 17 C -0.129 4.129 18 N -0.162 5.162 19 C -0.120 4.120 20 C -0.235 4.235 21 C -0.250 4.250 22 H 0.101 0.899 23 H 0.235 0.765 24 H 0.102 0.898 25 H 0.085 0.915 26 H 0.092 0.908 27 H 0.115 0.885 28 H 0.107 0.893 29 H 0.091 0.909 30 H 0.143 0.857 31 H 0.132 0.868 32 H 0.122 0.878 33 H 0.115 0.885 34 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 9.131 -11.779 2.066 15.047 hybrid contribution 0.579 0.201 -0.198 0.644 sum 9.710 -11.578 1.868 15.226 Atomic orbital electron populations 1.69895 1.06781 1.30729 1.40300 1.24746 0.94445 1.00804 0.88521 0.86206 0.79862 0.79729 0.79765 1.18905 1.20195 1.18866 1.30548 1.06137 1.11912 1.66678 0.87943 1.00365 0.72105 0.73299 0.72782 1.93369 1.73244 1.87681 1.45617 1.93350 1.72966 1.87592 1.45970 1.56078 1.55434 1.51272 1.26660 1.20955 0.93823 0.93797 0.89518 1.23934 0.94648 0.98965 0.92132 0.89170 1.23391 0.96972 1.01006 0.96626 1.23932 1.00303 0.96732 0.91892 1.68648 1.13882 1.29744 1.03959 1.23339 0.94577 0.95321 0.98811 1.23632 0.94251 1.01690 1.03909 1.23389 1.06557 0.93219 1.01817 0.89919 0.76459 0.89754 0.91472 0.90754 0.88542 0.89336 0.90899 0.85700 0.86840 0.87801 0.88470 0.88758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.28 13.19 55.43 0.73 -24.55 16 2 C 0.13 3.76 5.46 -17.82 -0.10 3.66 16 3 Si 0.92 20.93 29.54 -169.99 -5.02 15.91 16 4 H -0.26 -5.85 7.11 56.52 0.40 -5.45 16 5 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 6 H -0.26 -5.77 7.11 56.52 0.40 -5.37 16 7 C -1.02 -28.51 9.72 30.60 0.30 -28.21 16 8 H 0.10 2.64 7.81 -52.48 -0.41 2.23 16 9 S 2.71 72.84 5.02 -107.50 -0.54 72.30 16 10 O -1.01 -30.01 18.02 -57.17 -1.03 -31.04 16 11 O -1.01 -29.47 17.40 -57.17 -0.99 -30.47 16 12 N -1.14 -23.22 5.51 -10.61 -0.06 -23.28 16 13 C 0.15 2.54 6.31 -4.04 -0.03 2.52 16 14 C 0.01 0.18 2.55 -66.65 -0.17 0.01 16 15 H 0.09 1.20 5.15 -51.93 -0.27 0.93 16 16 C -0.14 -1.51 7.85 -25.80 -0.20 -1.71 16 17 C 0.00 0.00 7.78 -2.77 -0.02 -0.03 16 18 N -0.44 -5.75 6.36 -222.76 -1.42 -7.16 16 19 C -0.01 -0.13 6.59 -67.71 -0.45 -0.58 16 20 C -0.20 -2.49 8.11 -26.69 -0.22 -2.70 16 21 C -0.21 -2.17 8.80 -26.69 -0.23 -2.40 16 22 H 0.29 7.80 8.31 -40.82 -0.34 7.46 16 23 H 0.40 7.51 5.80 -34.47 -0.20 7.31 16 24 H 0.08 1.49 7.61 -51.93 -0.40 1.10 16 25 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 26 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.10 1.01 8.10 -51.93 -0.42 0.59 16 28 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.07 0.66 6.18 -51.92 -0.32 0.33 16 30 H 0.13 1.42 8.14 -51.93 -0.42 1.00 16 31 H 0.11 1.63 4.41 -51.92 -0.23 1.40 16 32 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.09 0.93 6.43 -51.93 -0.33 0.60 16 LS Contribution 288.17 15.07 4.34 4.34 Total: -1.00 -34.91 288.17 -9.35 -44.26 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -4.25 Total: 9.13 kcal Atomic # 6 Polarization: -28.32 SS G_CDS: -1.12 Total: -29.44 kcal Atomic # 7 Polarization: -54.24 SS G_CDS: -0.74 Total: -54.99 kcal Atomic # 8 Polarization: -59.48 SS G_CDS: -2.02 Total: -61.51 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: 72.84 SS G_CDS: -0.54 Total: 72.30 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -34.91 -9.35 -44.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691744731.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.799 kcal (2) G-P(sol) polarization free energy of solvation -34.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds