Wall clock time and date at job start Mon Mar 30 2020 04:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00285 * 2 1 4 4 H 1.48499 * 109.47294 * 239.99672 * 3 2 1 5 5 H 1.48497 * 109.47205 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47173 * 119.99770 * 3 2 1 7 7 C 1.37876 * 119.99596 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99759 * 179.97438 * 7 2 1 9 9 S 1.76201 * 120.00442 * 359.97438 * 7 2 1 10 10 O 1.42108 * 106.39730 * 66.46006 * 9 7 2 11 11 O 1.42097 * 106.40109 * 293.54595 * 9 7 2 12 12 N 1.65595 * 107.22239 * 179.97438 * 9 7 2 13 13 C 1.46500 * 119.99518 * 64.99954 * 12 9 7 14 14 C 1.53010 * 109.46960 * 156.82442 * 13 12 9 15 15 H 1.09000 * 112.95265 * 305.26099 * 14 13 12 16 16 C 1.53932 * 113.76025 * 173.60976 * 14 13 12 17 17 C 1.53927 * 86.34215 * 221.96544 * 16 14 13 18 18 N 1.47956 * 86.18201 * 23.72153 * 17 16 14 19 19 C 1.46905 * 111.00003 * 222.42025 * 18 17 16 20 20 C 1.52999 * 117.49994 * 115.79413 * 19 18 17 21 21 C 1.53001 * 117.50078 * 47.13316 * 19 18 17 22 22 H 0.97003 * 119.99782 * 0.02562 * 1 2 3 23 23 H 0.96994 * 120.00188 * 245.00618 * 12 9 7 24 24 H 1.09004 * 109.47212 * 36.82681 * 13 12 9 25 25 H 1.08999 * 109.47378 * 276.82112 * 13 12 9 26 26 H 1.09002 * 113.73192 * 107.59825 * 16 14 13 27 27 H 1.09006 * 113.73441 * 336.32237 * 16 14 13 28 28 H 1.09004 * 113.76296 * 138.04170 * 17 16 14 29 29 H 1.09008 * 113.75554 * 269.40281 * 17 16 14 30 30 H 1.09003 * 115.54637 * 261.46135 * 19 18 17 31 31 H 1.09009 * 117.49815 * 0.02562 * 20 19 18 32 32 H 1.08998 * 117.50220 * 145.01734 * 20 19 18 33 33 H 1.08992 * 117.50052 * 214.97865 * 21 19 18 34 34 H 1.09003 * 117.49498 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 16 1.1234 -2.7200 0.0019 10 8 0.4508 -2.7961 -1.2476 11 8 0.4517 -2.7944 1.2519 12 7 2.2481 -3.9355 0.0016 13 6 3.1400 -4.1084 1.1509 14 6 3.6469 -5.5515 1.1905 15 1 2.8409 -6.2853 1.1898 16 6 4.7150 -5.8043 2.2697 17 6 5.4488 -6.6421 1.2072 18 7 4.7155 -5.8351 0.2071 19 6 4.2146 -6.6794 -0.8857 20 6 2.6980 -6.7911 -1.0540 21 6 3.4968 -7.9758 -0.5049 22 1 -0.4850 0.8401 -0.0004 23 1 2.3164 -4.5329 -0.7595 24 1 2.5956 -3.8892 2.0695 25 1 3.9868 -3.4283 1.0592 26 1 4.3537 -6.3881 3.1163 27 1 5.2555 -4.9068 2.5708 28 1 6.5274 -6.4855 1.1924 29 1 5.1709 -7.6961 1.2103 30 1 4.8233 -6.6880 -1.7899 31 1 2.0718 -6.2378 -0.3540 32 1 2.3088 -6.8736 -2.0688 33 1 3.6329 -8.8372 -1.1587 34 1 3.3966 -8.2025 0.5566 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691744731.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:00 Heat of formation + Delta-G solvation = -52.103689 kcal Electronic energy + Delta-G solvation = -18281.049326 eV Core-core repulsion = 15341.350215 eV Total energy + Delta-G solvation = -2939.699111 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 260.098 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.73131 -37.41936 -36.56312 -36.14465 -35.66513 -35.11667 -29.33783 -28.27293 -28.25242 -24.49203 -22.98803 -22.64390 -21.02462 -19.97329 -19.30638 -18.25559 -17.98651 -17.29254 -16.69579 -16.31644 -15.88488 -15.61198 -15.29048 -15.13871 -14.08276 -13.95349 -13.63129 -13.34915 -13.17650 -12.99481 -12.95513 -12.62869 -12.51829 -12.42832 -12.31642 -12.22549 -11.75093 -11.60013 -11.43843 -11.23139 -11.08938 -10.95092 -10.18780 -9.62417 -8.74831 -7.47828 0.37146 1.34272 1.36672 1.49694 2.21527 2.58421 2.71564 2.83365 3.06286 3.56367 3.67609 3.74154 3.89962 3.94092 3.99663 4.15710 4.32128 4.41451 4.56561 4.64199 4.68755 4.81166 4.83636 4.95474 5.01171 5.09947 5.12074 5.14839 5.30007 5.32174 5.44116 5.90510 6.13282 6.35678 6.78658 8.21492 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.030259 B = 0.006280 C = 0.005783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.137194 B = 4457.371370 C = 4840.469904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.069 3.931 3 Si 0.991 3.009 4 H -0.253 1.253 5 H -0.263 1.263 6 H -0.248 1.248 7 C -1.041 5.041 8 H 0.119 0.881 9 S 2.720 3.280 10 O -1.047 7.047 11 O -1.041 7.041 12 N -1.122 6.122 13 C 0.137 3.863 14 C 0.011 3.989 15 H 0.092 0.908 16 C -0.133 4.133 17 C 0.008 3.992 18 N -0.461 5.461 19 C -0.020 4.020 20 C -0.223 4.223 21 C -0.184 4.184 22 H 0.299 0.701 23 H 0.411 0.589 24 H 0.075 0.925 25 H 0.069 0.931 26 H 0.094 0.906 27 H 0.097 0.903 28 H 0.101 0.899 29 H 0.089 0.911 30 H 0.131 0.869 31 H 0.092 0.908 32 H 0.106 0.894 33 H 0.117 0.883 34 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.287 -12.911 2.726 18.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.144 4.144 3 Si 0.809 3.191 4 H -0.177 1.177 5 H -0.187 1.187 6 H -0.172 1.172 7 C -1.174 5.174 8 H 0.137 0.863 9 S 2.821 3.179 10 O -1.038 7.038 11 O -1.031 7.031 12 N -0.883 5.883 13 C 0.011 3.989 14 C -0.100 4.100 15 H 0.110 0.890 16 C -0.171 4.171 17 C -0.119 4.119 18 N -0.183 5.183 19 C -0.129 4.129 20 C -0.260 4.260 21 C -0.222 4.222 22 H 0.109 0.891 23 H 0.247 0.753 24 H 0.093 0.907 25 H 0.087 0.913 26 H 0.113 0.887 27 H 0.116 0.884 28 H 0.119 0.881 29 H 0.107 0.893 30 H 0.149 0.851 31 H 0.110 0.890 32 H 0.124 0.876 33 H 0.135 0.865 34 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 11.478 -12.326 2.538 17.033 hybrid contribution -0.132 0.270 -0.350 0.462 sum 11.346 -12.056 2.188 16.700 Atomic orbital electron populations 1.69988 1.08768 1.32385 1.41468 1.26034 0.95395 1.05421 0.87520 0.85155 0.78769 0.74474 0.80727 1.17690 1.18684 1.17155 1.30891 1.07132 1.12699 1.66702 0.86326 0.99854 0.72612 0.73972 0.71486 1.93303 1.75060 1.88447 1.46951 1.93298 1.74532 1.88280 1.47011 1.55512 1.54897 1.49724 1.28169 1.21230 0.93000 0.96982 0.87708 1.23862 0.95575 0.96109 0.94478 0.88990 1.23405 0.95510 1.01512 0.96706 1.23998 1.00686 0.97149 0.90116 1.68606 1.13766 1.31363 1.04599 1.23428 0.93924 0.96473 0.99055 1.23617 0.94662 1.03928 1.03831 1.23445 1.03494 0.92740 1.02536 0.89094 0.75280 0.90665 0.91256 0.88715 0.88427 0.88105 0.89291 0.85123 0.88992 0.87603 0.86496 0.87981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -54.34 13.19 21.45 0.28 -54.06 16 2 C 0.07 3.91 5.46 84.65 0.46 4.38 16 3 Si 0.99 42.02 29.54 68.60 2.03 44.05 16 4 H -0.25 -10.19 7.11 99.48 0.71 -9.48 16 5 H -0.26 -10.42 7.11 99.48 0.71 -9.72 16 6 H -0.25 -9.80 7.11 99.48 0.71 -9.09 16 7 C -1.04 -58.69 9.72 67.73 0.66 -58.04 16 8 H 0.12 6.06 7.81 -2.91 -0.02 6.04 16 9 S 2.72 150.20 5.02 -56.49 -0.28 149.92 16 10 O -1.05 -64.54 18.02 -128.00 -2.31 -66.85 16 11 O -1.04 -62.92 17.40 -128.00 -2.23 -65.15 16 12 N -1.12 -46.62 5.51 -187.47 -1.03 -47.65 16 13 C 0.14 4.76 6.31 86.38 0.55 5.30 16 14 C 0.01 0.27 2.55 45.02 0.11 0.39 16 15 H 0.09 2.35 5.15 -2.39 -0.01 2.34 16 16 C -0.13 -2.48 7.85 31.24 0.25 -2.24 16 17 C 0.01 0.14 7.78 86.40 0.67 0.81 16 18 N -0.46 -11.14 6.36 -858.67 -5.46 -16.60 16 19 C -0.02 -0.44 6.59 44.91 0.30 -0.14 16 20 C -0.22 -5.46 8.11 30.62 0.25 -5.21 16 21 C -0.18 -3.31 8.80 30.62 0.27 -3.04 16 22 H 0.30 16.30 8.31 -92.71 -0.77 15.53 16 23 H 0.41 15.69 5.80 -96.75 -0.56 15.13 16 24 H 0.08 2.71 7.61 -2.39 -0.02 2.69 16 25 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 26 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.10 1.82 8.10 -2.38 -0.02 1.80 16 28 H 0.10 1.51 8.14 -2.38 -0.02 1.49 16 29 H 0.09 1.25 6.18 -2.38 -0.01 1.24 16 30 H 0.13 2.74 8.14 -2.39 -0.02 2.72 16 31 H 0.09 2.67 4.41 -2.38 -0.01 2.66 16 32 H 0.11 2.46 8.14 -2.39 -0.02 2.45 16 33 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.10 1.70 6.43 -2.39 -0.02 1.68 16 Total: -1.00 -76.37 288.17 -4.93 -81.30 By element: Atomic # 1 Polarization: 32.27 SS G_CDS: 0.56 Total: 32.83 kcal Atomic # 6 Polarization: -61.30 SS G_CDS: 3.51 Total: -57.79 kcal Atomic # 7 Polarization: -112.10 SS G_CDS: -6.21 Total: -118.31 kcal Atomic # 8 Polarization: -127.46 SS G_CDS: -4.53 Total: -132.00 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Atomic # 16 Polarization: 150.20 SS G_CDS: -0.28 Total: 149.92 kcal Total: -76.37 -4.93 -81.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691744731.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.197 kcal (2) G-P(sol) polarization free energy of solvation -76.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds