Wall clock time and date at job start Mon Mar 30 2020 05:07:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00166 * 2 1 4 4 H 1.48495 * 109.47331 * 269.99884 * 3 2 1 5 5 H 1.48497 * 109.46911 * 30.00201 * 3 2 1 6 6 H 1.48499 * 109.47009 * 149.99984 * 3 2 1 7 7 C 1.37878 * 119.99901 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99763 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00340 * 180.02562 * 7 2 1 10 10 C 1.52993 * 109.47440 * 179.97438 * 9 7 2 11 11 N 1.46500 * 109.47355 * 180.02562 * 10 9 7 12 12 C 1.34772 * 119.99957 * 179.97438 * 11 10 9 13 13 O 1.21550 * 120.00312 * 359.97438 * 12 11 10 14 14 C 1.47854 * 119.99854 * 180.02562 * 12 11 10 15 15 C 1.39608 * 120.13112 * 359.97438 * 14 12 11 16 16 C 1.37942 * 119.83334 * 179.97438 * 15 14 12 17 17 C 1.38376 * 120.16328 * 0.25976 * 16 15 14 18 18 C 1.38296 * 120.33924 * 359.47918 * 17 16 15 19 19 C 1.38206 * 120.04906 * 0.52536 * 18 17 16 20 20 C 1.51163 * 108.32393 * 179.73823 * 19 18 17 21 21 N 1.48053 * 105.65837 * 342.51164 * 20 19 18 22 22 C 1.48058 * 103.84627 * 27.56419 * 21 20 19 23 23 H 0.97005 * 119.99388 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.46786 * 59.99042 * 9 7 2 25 25 H 1.09009 * 109.46900 * 300.00176 * 9 7 2 26 26 H 1.08998 * 109.47176 * 59.99826 * 10 9 7 27 27 H 1.09003 * 109.47023 * 299.99640 * 10 9 7 28 28 H 0.97006 * 119.99965 * 359.97438 * 11 10 9 29 29 H 1.07998 * 120.08426 * 0.02562 * 15 14 12 30 30 H 1.08002 * 119.91513 * 179.97438 * 16 15 14 31 31 H 1.08000 * 119.82522 * 179.72352 * 17 16 15 32 32 H 1.08997 * 110.20990 * 101.56490 * 20 19 18 33 33 H 1.09001 * 110.20505 * 223.46933 * 20 19 18 34 34 H 1.00899 * 111.00314 * 146.90052 * 21 20 19 35 35 H 1.09003 * 110.20624 * 213.37883 * 22 21 20 36 36 H 1.08995 * 110.20634 * 91.47987 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6366 -0.0001 11 7 5.4864 -2.6367 0.0011 12 6 6.1602 -3.8039 0.0017 13 8 5.5524 -4.8566 0.0018 14 6 7.6387 -3.8040 0.0035 15 6 8.3396 -2.5966 0.0040 16 6 9.7190 -2.6038 0.0062 17 6 10.4080 -3.8038 0.0025 18 6 9.7208 -5.0040 0.0074 19 6 8.3388 -5.0101 0.0051 20 6 7.8699 -6.4471 0.0051 21 7 9.0393 -7.2490 -0.4210 22 6 10.2008 -6.4378 0.0091 23 1 -0.4849 0.8401 -0.0004 24 1 3.8745 -0.6808 0.8905 25 1 3.8752 -0.6797 -0.8895 26 1 3.6584 -3.1503 -0.8903 27 1 3.6578 -3.1506 0.8897 28 1 5.9715 -1.7967 0.0014 29 1 7.8032 -1.6592 0.0035 30 1 10.2625 -1.6705 0.0061 31 1 11.4880 -3.8031 -0.0003 32 1 7.5565 -6.7410 1.0068 33 1 7.0485 -6.5751 -0.7000 34 1 9.0421 -8.1519 0.0294 35 1 11.0257 -6.5596 -0.6930 36 1 10.5129 -6.7293 1.0119 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692806765.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:32 Heat of formation + Delta-G solvation = -4.519251 kcal Electronic energy + Delta-G solvation = -18487.920468 eV Core-core repulsion = 15550.673916 eV Total energy + Delta-G solvation = -2937.246551 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.74149 -38.87076 -36.48688 -35.04068 -32.87652 -31.86633 -30.37681 -29.97771 -27.72198 -25.30160 -24.01115 -22.29694 -21.47796 -20.72826 -20.00887 -17.38710 -16.96519 -16.64572 -15.82204 -15.76738 -15.19130 -14.93813 -14.74522 -14.19847 -13.80960 -13.59705 -13.38001 -13.15748 -12.78388 -12.61409 -12.38344 -12.19047 -11.59474 -11.54162 -11.46376 -11.22765 -10.42049 -10.29810 -9.98276 -9.57159 -9.46884 -9.32388 -9.11436 -8.65757 -8.55486 -8.45410 -6.12440 -4.12706 0.72265 1.06535 2.91845 3.24072 3.31523 3.32648 3.49423 3.74387 3.99766 4.13973 4.34096 4.36296 4.66785 4.77458 5.01049 5.14181 5.15488 5.20403 5.25772 5.36645 5.58096 5.62704 5.85519 6.05289 6.07456 6.12709 6.17979 6.18836 6.42148 6.53179 6.61586 6.69866 6.95056 7.10701 7.20533 7.64561 7.84303 8.41265 8.49805 8.91878 9.47526 11.00600 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.036397 B = 0.004015 C = 0.003634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.102414 B = 6971.968176 C = 7703.617410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.069 3.931 3 Si 0.882 3.118 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.523 4.523 8 H 0.076 0.924 9 C -0.022 4.022 10 C 0.130 3.870 11 N -0.720 5.720 12 C 0.548 3.452 13 O -0.539 6.539 14 C -0.110 4.110 15 C -0.085 4.085 16 C -0.125 4.125 17 C -0.080 4.080 18 C -0.118 4.118 19 C -0.041 4.041 20 C 0.080 3.920 21 N -0.661 5.661 22 C 0.081 3.919 23 H 0.265 0.735 24 H 0.022 0.978 25 H 0.018 0.982 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.395 0.605 29 H 0.132 0.868 30 H 0.133 0.867 31 H 0.126 0.874 32 H 0.064 0.936 33 H 0.108 0.892 34 H 0.346 0.654 35 H 0.090 0.910 36 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.638 -7.486 1.241 24.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.133 4.133 3 Si 0.709 3.291 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.562 4.562 8 H 0.094 0.906 9 C -0.060 4.060 10 C 0.008 3.992 11 N -0.370 5.370 12 C 0.334 3.666 13 O -0.418 6.418 14 C -0.114 4.114 15 C -0.104 4.104 16 C -0.143 4.143 17 C -0.098 4.098 18 C -0.119 4.119 19 C -0.043 4.043 20 C -0.048 4.048 21 N -0.290 5.290 22 C -0.048 4.048 23 H 0.075 0.925 24 H 0.040 0.960 25 H 0.036 0.964 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.229 0.771 29 H 0.150 0.850 30 H 0.150 0.850 31 H 0.144 0.856 32 H 0.082 0.918 33 H 0.126 0.874 34 H 0.162 0.838 35 H 0.109 0.891 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 22.976 -7.964 0.512 24.322 hybrid contribution 0.555 1.405 0.996 1.809 sum 23.531 -6.559 1.507 24.475 Atomic orbital electron populations 1.69906 1.06292 1.27065 1.50360 1.25002 0.94770 0.99150 0.94355 0.86751 0.80251 0.83549 0.78524 1.20187 1.21243 1.19106 1.20910 0.88593 0.94930 1.51720 0.90581 1.19803 0.98081 0.91288 0.96851 1.21551 0.75587 1.00258 1.01812 1.46269 1.09305 1.07684 1.73750 1.18246 0.86620 0.84428 0.77277 1.90736 1.69786 1.31081 1.50173 1.19583 0.93442 0.92761 1.05572 1.21337 0.94629 0.96942 0.97500 1.21019 0.93915 0.98016 1.01334 1.20628 0.99959 0.90845 0.98394 1.20577 0.94096 0.95243 1.01963 1.20487 0.93708 0.94483 0.95584 1.21496 0.94414 0.87808 1.01071 1.63596 1.01593 1.05135 1.58671 1.21403 0.95146 0.88561 0.99710 0.92529 0.95990 0.96390 0.91719 0.91745 0.77058 0.84980 0.84958 0.85597 0.91783 0.87438 0.83819 0.89141 0.92400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.30 13.96 55.43 0.77 -26.53 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 20.94 27.47 -169.99 -4.67 16.27 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.27 -5.95 6.54 56.52 0.37 -5.58 16 7 C -0.52 -14.63 9.66 -34.44 -0.33 -14.96 16 8 H 0.08 2.31 7.99 -52.49 -0.42 1.89 16 9 C -0.02 -0.51 4.16 -27.89 -0.12 -0.63 16 10 C 0.13 2.66 5.61 -4.05 -0.02 2.64 16 11 N -0.72 -12.15 5.51 -61.25 -0.34 -12.49 16 12 C 0.55 9.44 7.77 -12.33 -0.10 9.34 16 13 O -0.54 -10.88 14.87 5.32 0.08 -10.80 16 14 C -0.11 -1.56 5.87 -105.00 -0.62 -2.17 16 15 C -0.09 -0.96 9.54 -39.18 -0.37 -1.33 16 16 C -0.12 -1.16 10.03 -39.64 -0.40 -1.56 16 17 C -0.08 -0.74 10.04 -39.51 -0.40 -1.13 16 18 C -0.12 -1.30 6.26 -104.36 -0.65 -1.96 16 19 C -0.04 -0.55 6.10 -103.96 -0.63 -1.19 16 20 C 0.08 1.03 6.36 -4.11 -0.03 1.00 16 21 N -0.66 -6.83 7.72 -114.02 -0.88 -7.72 16 22 C 0.08 0.72 7.46 -4.09 -0.03 0.69 16 23 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 24 H 0.02 0.49 7.20 -51.93 -0.37 0.11 16 25 H 0.02 0.39 7.57 -51.92 -0.39 0.00 16 26 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 27 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 28 H 0.39 5.54 6.51 -40.82 -0.27 5.28 16 29 H 0.13 1.24 6.41 -52.49 -0.34 0.91 16 30 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 31 H 0.13 0.81 8.06 -52.49 -0.42 0.38 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.11 1.60 7.28 -51.93 -0.38 1.22 16 34 H 0.35 2.68 8.92 -39.29 -0.35 2.33 16 35 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 301.61 15.07 4.55 4.55 Total: -1.00 -32.86 301.61 -8.92 -41.79 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -4.64 Total: 4.30 kcal Atomic # 6 Polarization: -5.59 SS G_CDS: -3.79 Total: -9.38 kcal Atomic # 7 Polarization: -46.29 SS G_CDS: -0.44 Total: -46.73 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.08 Total: -10.80 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.67 Total: 16.27 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -32.86 -8.92 -41.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692806765.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.268 kcal (2) G-P(sol) polarization free energy of solvation -32.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds