Wall clock time and date at job start Mon Mar 30 2020 05:07:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31514 * 1
3 3 Si 1.86801 * 120.00166 * 2 1
4 4 H 1.48495 * 109.47331 * 269.99884 * 3 2 1
5 5 H 1.48497 * 109.46911 * 30.00201 * 3 2 1
6 6 H 1.48499 * 109.47009 * 149.99984 * 3 2 1
7 7 C 1.37878 * 119.99901 * 180.02562 * 2 1 3
8 8 H 1.07998 * 119.99763 * 359.97438 * 7 2 1
9 9 C 1.50698 * 120.00340 * 180.02562 * 7 2 1
10 10 C 1.52993 * 109.47440 * 179.97438 * 9 7 2
11 11 N 1.46500 * 109.47355 * 180.02562 * 10 9 7
12 12 C 1.34772 * 119.99957 * 179.97438 * 11 10 9
13 13 O 1.21550 * 120.00312 * 359.97438 * 12 11 10
14 14 C 1.47854 * 119.99854 * 180.02562 * 12 11 10
15 15 C 1.39608 * 120.13112 * 359.97438 * 14 12 11
16 16 C 1.37942 * 119.83334 * 179.97438 * 15 14 12
17 17 C 1.38376 * 120.16328 * 0.25976 * 16 15 14
18 18 C 1.38296 * 120.33924 * 359.47918 * 17 16 15
19 19 C 1.38206 * 120.04906 * 0.52536 * 18 17 16
20 20 C 1.51163 * 108.32393 * 179.73823 * 19 18 17
21 21 N 1.48053 * 105.65837 * 342.51164 * 20 19 18
22 22 C 1.48058 * 103.84627 * 27.56419 * 21 20 19
23 23 H 0.97005 * 119.99388 * 0.02562 * 1 2 3
24 24 H 1.09004 * 109.46786 * 59.99042 * 9 7 2
25 25 H 1.09009 * 109.46900 * 300.00176 * 9 7 2
26 26 H 1.08998 * 109.47176 * 59.99826 * 10 9 7
27 27 H 1.09003 * 109.47023 * 299.99640 * 10 9 7
28 28 H 0.97006 * 119.99965 * 359.97438 * 11 10 9
29 29 H 1.07998 * 120.08426 * 0.02562 * 15 14 12
30 30 H 1.08002 * 119.91513 * 179.97438 * 16 15 14
31 31 H 1.08000 * 119.82522 * 179.72352 * 17 16 15
32 32 H 1.08997 * 110.20990 * 101.56490 * 20 19 18
33 33 H 1.09001 * 110.20505 * 223.46933 * 20 19 18
34 34 H 1.00899 * 111.00314 * 146.90052 * 21 20 19
35 35 H 1.09003 * 110.20624 * 213.37883 * 22 21 20
36 36 H 1.08995 * 110.20634 * 91.47987 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 2.4967 2.0464 -1.4000
5 1 1.4467 2.6526 0.7001
6 1 3.5467 1.4401 0.7000
7 6 2.0045 -1.1941 -0.0005
8 1 1.4645 -2.1293 -0.0005
9 6 3.5115 -1.1942 0.0000
10 6 4.0214 -2.6366 -0.0001
11 7 5.4864 -2.6367 0.0011
12 6 6.1602 -3.8039 0.0017
13 8 5.5524 -4.8566 0.0018
14 6 7.6387 -3.8040 0.0035
15 6 8.3396 -2.5966 0.0040
16 6 9.7190 -2.6038 0.0062
17 6 10.4080 -3.8038 0.0025
18 6 9.7208 -5.0040 0.0074
19 6 8.3388 -5.0101 0.0051
20 6 7.8699 -6.4471 0.0051
21 7 9.0393 -7.2490 -0.4210
22 6 10.2008 -6.4378 0.0091
23 1 -0.4849 0.8401 -0.0004
24 1 3.8745 -0.6808 0.8905
25 1 3.8752 -0.6797 -0.8895
26 1 3.6584 -3.1503 -0.8903
27 1 3.6578 -3.1506 0.8897
28 1 5.9715 -1.7967 0.0014
29 1 7.8032 -1.6592 0.0035
30 1 10.2625 -1.6705 0.0061
31 1 11.4880 -3.8031 -0.0003
32 1 7.5565 -6.7410 1.0068
33 1 7.0485 -6.5751 -0.7000
34 1 9.0421 -8.1519 0.0294
35 1 11.0257 -6.5596 -0.6930
36 1 10.5129 -6.7293 1.0119
RHF calculation, no. of doubly occupied orbitals= 48
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000692806765.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:07:32
Heat of formation + Delta-G solvation = -4.519251 kcal
Electronic energy + Delta-G solvation = -18487.920468 eV
Core-core repulsion = 15550.673916 eV
Total energy + Delta-G solvation = -2937.246551 eV
No. of doubly occupied orbitals = 48
Molecular weight
(most abundant/longest-lived isotopes) = 260.127 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-40.74149 -38.87076 -36.48688 -35.04068 -32.87652 -31.86633 -30.37681 -29.97771
-27.72198 -25.30160 -24.01115 -22.29694 -21.47796 -20.72826 -20.00887 -17.38710
-16.96519 -16.64572 -15.82204 -15.76738 -15.19130 -14.93813 -14.74522 -14.19847
-13.80960 -13.59705 -13.38001 -13.15748 -12.78388 -12.61409 -12.38344 -12.19047
-11.59474 -11.54162 -11.46376 -11.22765 -10.42049 -10.29810 -9.98276 -9.57159
-9.46884 -9.32388 -9.11436 -8.65757 -8.55486 -8.45410 -6.12440 -4.12706
0.72265 1.06535 2.91845 3.24072 3.31523 3.32648 3.49423 3.74387
3.99766 4.13973 4.34096 4.36296 4.66785 4.77458 5.01049 5.14181
5.15488 5.20403 5.25772 5.36645 5.58096 5.62704 5.85519 6.05289
6.07456 6.12709 6.17979 6.18836 6.42148 6.53179 6.61586 6.69866
6.95056 7.10701 7.20533 7.64561 7.84303 8.41265 8.49805 8.91878
9.47526 11.00600
Molecular weight = 260.13amu
Principal moments of inertia in cm(-1)
A = 0.036397 B = 0.004015 C = 0.003634
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 769.102414 B = 6971.968176 C = 7703.617410
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.898 5.898
2 C 0.069 3.931
3 Si 0.882 3.118
4 H -0.276 1.276
5 H -0.286 1.286
6 H -0.266 1.266
7 C -0.523 4.523
8 H 0.076 0.924
9 C -0.022 4.022
10 C 0.130 3.870
11 N -0.720 5.720
12 C 0.548 3.452
13 O -0.539 6.539
14 C -0.110 4.110
15 C -0.085 4.085
16 C -0.125 4.125
17 C -0.080 4.080
18 C -0.118 4.118
19 C -0.041 4.041
20 C 0.080 3.920
21 N -0.661 5.661
22 C 0.081 3.919
23 H 0.265 0.735
24 H 0.022 0.978
25 H 0.018 0.982
26 H 0.064 0.936
27 H 0.064 0.936
28 H 0.395 0.605
29 H 0.132 0.868
30 H 0.133 0.867
31 H 0.126 0.874
32 H 0.064 0.936
33 H 0.108 0.892
34 H 0.346 0.654
35 H 0.090 0.910
36 H 0.058 0.942
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 23.638 -7.486 1.241 24.826
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.536 5.536
2 C -0.133 4.133
3 Si 0.709 3.291
4 H -0.202 1.202
5 H -0.212 1.212
6 H -0.191 1.191
7 C -0.562 4.562
8 H 0.094 0.906
9 C -0.060 4.060
10 C 0.008 3.992
11 N -0.370 5.370
12 C 0.334 3.666
13 O -0.418 6.418
14 C -0.114 4.114
15 C -0.104 4.104
16 C -0.143 4.143
17 C -0.098 4.098
18 C -0.119 4.119
19 C -0.043 4.043
20 C -0.048 4.048
21 N -0.290 5.290
22 C -0.048 4.048
23 H 0.075 0.925
24 H 0.040 0.960
25 H 0.036 0.964
26 H 0.083 0.917
27 H 0.083 0.917
28 H 0.229 0.771
29 H 0.150 0.850
30 H 0.150 0.850
31 H 0.144 0.856
32 H 0.082 0.918
33 H 0.126 0.874
34 H 0.162 0.838
35 H 0.109 0.891
36 H 0.076 0.924
Dipole moment (debyes) X Y Z Total
from point charges 22.976 -7.964 0.512 24.322
hybrid contribution 0.555 1.405 0.996 1.809
sum 23.531 -6.559 1.507 24.475
Atomic orbital electron populations
1.69906 1.06292 1.27065 1.50360 1.25002 0.94770 0.99150 0.94355
0.86751 0.80251 0.83549 0.78524 1.20187 1.21243 1.19106 1.20910
0.88593 0.94930 1.51720 0.90581 1.19803 0.98081 0.91288 0.96851
1.21551 0.75587 1.00258 1.01812 1.46269 1.09305 1.07684 1.73750
1.18246 0.86620 0.84428 0.77277 1.90736 1.69786 1.31081 1.50173
1.19583 0.93442 0.92761 1.05572 1.21337 0.94629 0.96942 0.97500
1.21019 0.93915 0.98016 1.01334 1.20628 0.99959 0.90845 0.98394
1.20577 0.94096 0.95243 1.01963 1.20487 0.93708 0.94483 0.95584
1.21496 0.94414 0.87808 1.01071 1.63596 1.01593 1.05135 1.58671
1.21403 0.95146 0.88561 0.99710 0.92529 0.95990 0.96390 0.91719
0.91745 0.77058 0.84980 0.84958 0.85597 0.91783 0.87438 0.83819
0.89141 0.92400
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -27.30 13.96 55.43 0.77 -26.53 16
2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16
3 Si 0.88 20.94 27.47 -169.99 -4.67 16.27 16
4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16
5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16
6 H -0.27 -5.95 6.54 56.52 0.37 -5.58 16
7 C -0.52 -14.63 9.66 -34.44 -0.33 -14.96 16
8 H 0.08 2.31 7.99 -52.49 -0.42 1.89 16
9 C -0.02 -0.51 4.16 -27.89 -0.12 -0.63 16
10 C 0.13 2.66 5.61 -4.05 -0.02 2.64 16
11 N -0.72 -12.15 5.51 -61.25 -0.34 -12.49 16
12 C 0.55 9.44 7.77 -12.33 -0.10 9.34 16
13 O -0.54 -10.88 14.87 5.32 0.08 -10.80 16
14 C -0.11 -1.56 5.87 -105.00 -0.62 -2.17 16
15 C -0.09 -0.96 9.54 -39.18 -0.37 -1.33 16
16 C -0.12 -1.16 10.03 -39.64 -0.40 -1.56 16
17 C -0.08 -0.74 10.04 -39.51 -0.40 -1.13 16
18 C -0.12 -1.30 6.26 -104.36 -0.65 -1.96 16
19 C -0.04 -0.55 6.10 -103.96 -0.63 -1.19 16
20 C 0.08 1.03 6.36 -4.11 -0.03 1.00 16
21 N -0.66 -6.83 7.72 -114.02 -0.88 -7.72 16
22 C 0.08 0.72 7.46 -4.09 -0.03 0.69 16
23 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16
24 H 0.02 0.49 7.20 -51.93 -0.37 0.11 16
25 H 0.02 0.39 7.57 -51.92 -0.39 0.00 16
26 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16
27 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16
28 H 0.39 5.54 6.51 -40.82 -0.27 5.28 16
29 H 0.13 1.24 6.41 -52.49 -0.34 0.91 16
30 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16
31 H 0.13 0.81 8.06 -52.49 -0.42 0.38 16
32 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16
33 H 0.11 1.60 7.28 -51.93 -0.38 1.22 16
34 H 0.35 2.68 8.92 -39.29 -0.35 2.33 16
35 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16
36 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16
LS Contribution 301.61 15.07 4.55 4.55
Total: -1.00 -32.86 301.61 -8.92 -41.79
By element:
Atomic # 1 Polarization: 8.95 SS G_CDS: -4.64 Total: 4.30 kcal
Atomic # 6 Polarization: -5.59 SS G_CDS: -3.79 Total: -9.38 kcal
Atomic # 7 Polarization: -46.29 SS G_CDS: -0.44 Total: -46.73 kcal
Atomic # 8 Polarization: -10.88 SS G_CDS: 0.08 Total: -10.80 kcal
Atomic # 14 Polarization: 20.94 SS G_CDS: -4.67 Total: 16.27 kcal
Total LS contribution 4.55 Total: 4.55 kcal
Total: -32.86 -8.92 -41.79 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000692806765.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 37.268 kcal
(2) G-P(sol) polarization free energy of solvation -32.863 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.405 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.924 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.787 kcal
(6) G-S(sol) free energy of system = (1) + (5) -4.519 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds