Wall clock time and date at job start Mon Mar 30 2020 05:07:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31514 * 1
3 3 Si 1.86801 * 120.00166 * 2 1
4 4 H 1.48495 * 109.47331 * 269.99884 * 3 2 1
5 5 H 1.48497 * 109.46911 * 30.00201 * 3 2 1
6 6 H 1.48499 * 109.47009 * 149.99984 * 3 2 1
7 7 C 1.37878 * 119.99901 * 180.02562 * 2 1 3
8 8 H 1.07998 * 119.99763 * 359.97438 * 7 2 1
9 9 C 1.50698 * 120.00340 * 180.02562 * 7 2 1
10 10 C 1.52993 * 109.47440 * 179.97438 * 9 7 2
11 11 N 1.46500 * 109.47355 * 180.02562 * 10 9 7
12 12 C 1.34772 * 119.99957 * 179.97438 * 11 10 9
13 13 O 1.21550 * 120.00312 * 359.97438 * 12 11 10
14 14 C 1.47854 * 119.99854 * 180.02562 * 12 11 10
15 15 C 1.39608 * 120.13112 * 359.97438 * 14 12 11
16 16 C 1.37942 * 119.83334 * 179.97438 * 15 14 12
17 17 C 1.38376 * 120.16328 * 0.25976 * 16 15 14
18 18 C 1.38296 * 120.33924 * 359.47918 * 17 16 15
19 19 C 1.38206 * 120.04906 * 0.52536 * 18 17 16
20 20 C 1.51163 * 108.32393 * 179.73823 * 19 18 17
21 21 N 1.48053 * 105.65837 * 342.51164 * 20 19 18
22 22 C 1.48058 * 103.84627 * 27.56419 * 21 20 19
23 23 H 0.97005 * 119.99388 * 0.02562 * 1 2 3
24 24 H 1.09004 * 109.46786 * 59.99042 * 9 7 2
25 25 H 1.09009 * 109.46900 * 300.00176 * 9 7 2
26 26 H 1.08998 * 109.47176 * 59.99826 * 10 9 7
27 27 H 1.09003 * 109.47023 * 299.99640 * 10 9 7
28 28 H 0.97006 * 119.99965 * 359.97438 * 11 10 9
29 29 H 1.07998 * 120.08426 * 0.02562 * 15 14 12
30 30 H 1.08002 * 119.91513 * 179.97438 * 16 15 14
31 31 H 1.08000 * 119.82522 * 179.72352 * 17 16 15
32 32 H 1.08997 * 110.20990 * 101.56490 * 20 19 18
33 33 H 1.09001 * 110.20505 * 223.46933 * 20 19 18
34 34 H 1.00899 * 111.00314 * 146.90052 * 21 20 19
35 35 H 1.09003 * 110.20624 * 213.37883 * 22 21 20
36 36 H 1.08995 * 110.20634 * 91.47987 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 2.4967 2.0464 -1.4000
5 1 1.4467 2.6526 0.7001
6 1 3.5467 1.4401 0.7000
7 6 2.0045 -1.1941 -0.0005
8 1 1.4645 -2.1293 -0.0005
9 6 3.5115 -1.1942 0.0000
10 6 4.0214 -2.6366 -0.0001
11 7 5.4864 -2.6367 0.0011
12 6 6.1602 -3.8039 0.0017
13 8 5.5524 -4.8566 0.0018
14 6 7.6387 -3.8040 0.0035
15 6 8.3396 -2.5966 0.0040
16 6 9.7190 -2.6038 0.0062
17 6 10.4080 -3.8038 0.0025
18 6 9.7208 -5.0040 0.0074
19 6 8.3388 -5.0101 0.0051
20 6 7.8699 -6.4471 0.0051
21 7 9.0393 -7.2490 -0.4210
22 6 10.2008 -6.4378 0.0091
23 1 -0.4849 0.8401 -0.0004
24 1 3.8745 -0.6808 0.8905
25 1 3.8752 -0.6797 -0.8895
26 1 3.6584 -3.1503 -0.8903
27 1 3.6578 -3.1506 0.8897
28 1 5.9715 -1.7967 0.0014
29 1 7.8032 -1.6592 0.0035
30 1 10.2625 -1.6705 0.0061
31 1 11.4880 -3.8031 -0.0003
32 1 7.5565 -6.7410 1.0068
33 1 7.0485 -6.5751 -0.7000
34 1 9.0421 -8.1519 0.0294
35 1 11.0257 -6.5596 -0.6930
36 1 10.5129 -6.7293 1.0119
RHF calculation, no. of doubly occupied orbitals= 48
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000692806765.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:07:31
Heat of formation + Delta-G solvation = -29.618551 kcal
Electronic energy + Delta-G solvation = -18489.008855 eV
Core-core repulsion = 15550.673916 eV
Total energy + Delta-G solvation = -2938.334939 eV
No. of doubly occupied orbitals = 48
Molecular weight
(most abundant/longest-lived isotopes) = 260.127 amu
Computer time = 0.39 seconds
Orbital eigenvalues (eV)
-41.70723 -40.11695 -37.32784 -36.68627 -34.83316 -32.98620 -31.79014 -31.04349
-28.66819 -26.93224 -25.11158 -23.39040 -22.73738 -22.06566 -21.25399 -19.00492
-18.49545 -17.64914 -16.88049 -16.60725 -16.52772 -16.31048 -16.10469 -15.70395
-15.03980 -14.87904 -14.61004 -14.54595 -14.08715 -13.56156 -13.35903 -13.30834
-13.06488 -12.98795 -12.47542 -12.34757 -12.18373 -12.15886 -11.76879 -11.53491
-10.92243 -10.79868 -10.28841 -10.21557 -9.84360 -9.27761 -8.31012 -6.38780
-0.19969 0.25705 1.38739 1.41680 1.52851 1.81059 2.15409 2.36412
2.76078 3.03976 3.20096 3.37779 3.50433 3.69200 4.00641 4.25380
4.31289 4.32614 4.38740 4.42445 4.49469 4.55735 4.71150 4.81737
4.84420 4.98012 5.07973 5.24346 5.30887 5.36245 5.37389 5.38382
5.59233 5.61844 5.85979 6.20468 6.27768 6.52705 6.69200 7.16637
7.25896 8.85863
Molecular weight = 260.13amu
Principal moments of inertia in cm(-1)
A = 0.036397 B = 0.004015 C = 0.003634
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 769.102414 B = 6971.968176 C = 7703.617410
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.951 5.951
2 C 0.004 3.996
3 Si 0.960 3.040
4 H -0.264 1.264
5 H -0.286 1.286
6 H -0.235 1.235
7 C -0.541 4.541
8 H 0.028 0.972
9 C -0.012 4.012
10 C 0.145 3.855
11 N -0.710 5.710
12 C 0.545 3.455
13 O -0.581 6.581
14 C -0.136 4.136
15 C -0.088 4.088
16 C -0.117 4.117
17 C -0.069 4.069
18 C -0.124 4.124
19 C -0.072 4.072
20 C 0.083 3.917
21 N -0.668 5.668
22 C 0.081 3.919
23 H 0.268 0.732
24 H 0.039 0.961
25 H 0.037 0.963
26 H 0.044 0.956
27 H 0.045 0.955
28 H 0.412 0.588
29 H 0.150 0.850
30 H 0.170 0.830
31 H 0.164 0.836
32 H 0.058 0.942
33 H 0.074 0.926
34 H 0.359 0.641
35 H 0.109 0.891
36 H 0.079 0.921
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 28.241 -5.374 1.402 28.782
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.591 5.591
2 C -0.193 4.193
3 Si 0.782 3.218
4 H -0.189 1.189
5 H -0.212 1.212
6 H -0.158 1.158
7 C -0.579 4.579
8 H 0.046 0.954
9 C -0.050 4.050
10 C 0.021 3.979
11 N -0.362 5.362
12 C 0.333 3.667
13 O -0.462 6.462
14 C -0.140 4.140
15 C -0.106 4.106
16 C -0.134 4.134
17 C -0.087 4.087
18 C -0.124 4.124
19 C -0.073 4.073
20 C -0.045 4.045
21 N -0.298 5.298
22 C -0.047 4.047
23 H 0.077 0.923
24 H 0.057 0.943
25 H 0.055 0.945
26 H 0.063 0.937
27 H 0.064 0.936
28 H 0.250 0.750
29 H 0.167 0.833
30 H 0.188 0.812
31 H 0.182 0.818
32 H 0.076 0.924
33 H 0.092 0.908
34 H 0.176 0.824
35 H 0.127 0.873
36 H 0.097 0.903
Dipole moment (debyes) X Y Z Total
from point charges 27.627 -5.861 0.676 28.249
hybrid contribution -0.863 0.636 0.938 1.424
sum 26.764 -5.225 1.614 27.317
Atomic orbital electron populations
1.70081 1.08629 1.28483 1.51873 1.26103 0.95712 1.03947 0.93580
0.85526 0.79713 0.77183 0.79395 1.18921 1.21195 1.15809 1.21242
0.91538 0.93407 1.51747 0.95386 1.19653 0.94493 0.92657 0.98182
1.21072 0.78011 0.98726 1.00073 1.45977 1.07547 1.08758 1.73906
1.18864 0.88286 0.83583 0.75919 1.90712 1.71042 1.32498 1.51950
1.19434 0.91063 0.94568 1.08925 1.21601 0.95862 0.96256 0.96895
1.21482 0.93022 0.99673 0.99255 1.21130 1.01883 0.89923 0.95771
1.20942 0.92907 0.97004 1.01582 1.20680 0.95346 0.94214 0.97097
1.21295 0.94611 0.88838 0.99794 1.63537 1.01299 1.05782 1.59189
1.21539 0.94642 0.87146 1.01367 0.92285 0.94316 0.94506 0.93717
0.93633 0.75030 0.83288 0.81245 0.81850 0.92372 0.90804 0.82407
0.87266 0.90344
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.95 -59.57 13.96 21.45 0.30 -59.27 16
2 C 0.00 0.21 5.47 84.66 0.46 0.68 16
3 Si 0.96 42.14 27.47 68.60 1.88 44.03 16
4 H -0.26 -11.08 7.11 99.48 0.71 -10.38 16
5 H -0.29 -12.48 7.11 99.48 0.71 -11.78 16
6 H -0.24 -9.09 6.54 99.48 0.65 -8.44 16
7 C -0.54 -31.17 9.66 25.60 0.25 -30.92 16
8 H 0.03 1.81 7.99 -2.91 -0.02 1.79 16
9 C -0.01 -0.54 4.16 29.85 0.12 -0.42 16
10 C 0.14 6.10 5.61 86.38 0.48 6.58 16
11 N -0.71 -23.77 5.51 -465.98 -2.57 -26.34 16
12 C 0.54 19.23 7.77 86.79 0.67 19.90 16
13 O -0.58 -24.95 14.87 -3.87 -0.06 -25.01 16
14 C -0.14 -3.78 5.87 -20.11 -0.12 -3.90 16
15 C -0.09 -1.71 9.54 22.53 0.21 -1.50 16
16 C -0.12 -1.61 10.03 22.23 0.22 -1.39 16
17 C -0.07 -0.95 10.04 22.32 0.22 -0.73 16
18 C -0.12 -2.40 6.26 -19.70 -0.12 -2.52 16
19 C -0.07 -1.91 6.10 -19.43 -0.12 -2.03 16
20 C 0.08 2.23 6.36 85.48 0.54 2.78 16
21 N -0.67 -13.35 7.72 -514.66 -3.97 -17.32 16
22 C 0.08 1.24 7.46 85.50 0.64 1.88 16
23 H 0.27 15.57 8.31 -92.70 -0.77 14.80 16
24 H 0.04 1.62 7.20 -2.39 -0.02 1.60 16
25 H 0.04 1.53 7.57 -2.38 -0.02 1.51 16
26 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16
27 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16
28 H 0.41 10.71 6.51 -92.70 -0.60 10.11 16
29 H 0.15 2.27 6.41 -2.91 -0.02 2.25 16
30 H 0.17 1.12 8.06 -2.91 -0.02 1.09 16
31 H 0.16 1.06 8.06 -2.91 -0.02 1.04 16
32 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16
33 H 0.07 2.42 7.28 -2.39 -0.02 2.41 16
34 H 0.36 5.32 8.92 -89.70 -0.80 4.52 16
35 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16
36 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16
Total: -1.00 -75.99 301.61 -1.28 -77.27
By element:
Atomic # 1 Polarization: 18.57 SS G_CDS: -0.35 Total: 18.22 kcal
Atomic # 6 Polarization: -15.06 SS G_CDS: 3.48 Total: -11.58 kcal
Atomic # 7 Polarization: -96.69 SS G_CDS: -6.24 Total: -102.93 kcal
Atomic # 8 Polarization: -24.95 SS G_CDS: -0.06 Total: -25.01 kcal
Atomic # 14 Polarization: 42.14 SS G_CDS: 1.88 Total: 44.03 kcal
Total: -75.99 -1.28 -77.27 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000692806765.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 47.656 kcal
(2) G-P(sol) polarization free energy of solvation -75.991 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.335 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.283 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.274 kcal
(6) G-S(sol) free energy of system = (1) + (5) -29.619 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.39 seconds