Wall clock time and date at job start Mon Mar 30 2020 05:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00166 * 2 1 4 4 H 1.48495 * 109.47331 * 269.99884 * 3 2 1 5 5 H 1.48497 * 109.46911 * 30.00201 * 3 2 1 6 6 H 1.48499 * 109.47009 * 149.99984 * 3 2 1 7 7 C 1.37878 * 119.99901 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99763 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00340 * 180.02562 * 7 2 1 10 10 C 1.52993 * 109.47440 * 179.97438 * 9 7 2 11 11 N 1.46500 * 109.47355 * 180.02562 * 10 9 7 12 12 C 1.34772 * 119.99957 * 179.97438 * 11 10 9 13 13 O 1.21550 * 120.00312 * 359.97438 * 12 11 10 14 14 C 1.47854 * 119.99854 * 180.02562 * 12 11 10 15 15 C 1.39608 * 120.13112 * 359.97438 * 14 12 11 16 16 C 1.37942 * 119.83334 * 179.97438 * 15 14 12 17 17 C 1.38376 * 120.16328 * 0.25976 * 16 15 14 18 18 C 1.38296 * 120.33924 * 359.47918 * 17 16 15 19 19 C 1.38206 * 120.04906 * 0.52536 * 18 17 16 20 20 C 1.51163 * 108.32393 * 179.73823 * 19 18 17 21 21 N 1.48053 * 105.65837 * 342.51164 * 20 19 18 22 22 C 1.48058 * 103.84627 * 27.56419 * 21 20 19 23 23 H 0.97005 * 119.99388 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.46786 * 59.99042 * 9 7 2 25 25 H 1.09009 * 109.46900 * 300.00176 * 9 7 2 26 26 H 1.08998 * 109.47176 * 59.99826 * 10 9 7 27 27 H 1.09003 * 109.47023 * 299.99640 * 10 9 7 28 28 H 0.97006 * 119.99965 * 359.97438 * 11 10 9 29 29 H 1.07998 * 120.08426 * 0.02562 * 15 14 12 30 30 H 1.08002 * 119.91513 * 179.97438 * 16 15 14 31 31 H 1.08000 * 119.82522 * 179.72352 * 17 16 15 32 32 H 1.08997 * 110.20990 * 101.56490 * 20 19 18 33 33 H 1.09001 * 110.20505 * 223.46933 * 20 19 18 34 34 H 1.00899 * 111.00314 * 146.90052 * 21 20 19 35 35 H 1.09003 * 110.20624 * 213.37883 * 22 21 20 36 36 H 1.08995 * 110.20634 * 91.47987 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6366 -0.0001 11 7 5.4864 -2.6367 0.0011 12 6 6.1602 -3.8039 0.0017 13 8 5.5524 -4.8566 0.0018 14 6 7.6387 -3.8040 0.0035 15 6 8.3396 -2.5966 0.0040 16 6 9.7190 -2.6038 0.0062 17 6 10.4080 -3.8038 0.0025 18 6 9.7208 -5.0040 0.0074 19 6 8.3388 -5.0101 0.0051 20 6 7.8699 -6.4471 0.0051 21 7 9.0393 -7.2490 -0.4210 22 6 10.2008 -6.4378 0.0091 23 1 -0.4849 0.8401 -0.0004 24 1 3.8745 -0.6808 0.8905 25 1 3.8752 -0.6797 -0.8895 26 1 3.6584 -3.1503 -0.8903 27 1 3.6578 -3.1506 0.8897 28 1 5.9715 -1.7967 0.0014 29 1 7.8032 -1.6592 0.0035 30 1 10.2625 -1.6705 0.0061 31 1 11.4880 -3.8031 -0.0003 32 1 7.5565 -6.7410 1.0068 33 1 7.0485 -6.5751 -0.7000 34 1 9.0421 -8.1519 0.0294 35 1 11.0257 -6.5596 -0.6930 36 1 10.5129 -6.7293 1.0119 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692806765.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:31 Heat of formation + Delta-G solvation = -29.618551 kcal Electronic energy + Delta-G solvation = -18489.008855 eV Core-core repulsion = 15550.673916 eV Total energy + Delta-G solvation = -2938.334939 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.70723 -40.11695 -37.32784 -36.68627 -34.83316 -32.98620 -31.79014 -31.04349 -28.66819 -26.93224 -25.11158 -23.39040 -22.73738 -22.06566 -21.25399 -19.00492 -18.49545 -17.64914 -16.88049 -16.60725 -16.52772 -16.31048 -16.10469 -15.70395 -15.03980 -14.87904 -14.61004 -14.54595 -14.08715 -13.56156 -13.35903 -13.30834 -13.06488 -12.98795 -12.47542 -12.34757 -12.18373 -12.15886 -11.76879 -11.53491 -10.92243 -10.79868 -10.28841 -10.21557 -9.84360 -9.27761 -8.31012 -6.38780 -0.19969 0.25705 1.38739 1.41680 1.52851 1.81059 2.15409 2.36412 2.76078 3.03976 3.20096 3.37779 3.50433 3.69200 4.00641 4.25380 4.31289 4.32614 4.38740 4.42445 4.49469 4.55735 4.71150 4.81737 4.84420 4.98012 5.07973 5.24346 5.30887 5.36245 5.37389 5.38382 5.59233 5.61844 5.85979 6.20468 6.27768 6.52705 6.69200 7.16637 7.25896 8.85863 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.036397 B = 0.004015 C = 0.003634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.102414 B = 6971.968176 C = 7703.617410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.004 3.996 3 Si 0.960 3.040 4 H -0.264 1.264 5 H -0.286 1.286 6 H -0.235 1.235 7 C -0.541 4.541 8 H 0.028 0.972 9 C -0.012 4.012 10 C 0.145 3.855 11 N -0.710 5.710 12 C 0.545 3.455 13 O -0.581 6.581 14 C -0.136 4.136 15 C -0.088 4.088 16 C -0.117 4.117 17 C -0.069 4.069 18 C -0.124 4.124 19 C -0.072 4.072 20 C 0.083 3.917 21 N -0.668 5.668 22 C 0.081 3.919 23 H 0.268 0.732 24 H 0.039 0.961 25 H 0.037 0.963 26 H 0.044 0.956 27 H 0.045 0.955 28 H 0.412 0.588 29 H 0.150 0.850 30 H 0.170 0.830 31 H 0.164 0.836 32 H 0.058 0.942 33 H 0.074 0.926 34 H 0.359 0.641 35 H 0.109 0.891 36 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.241 -5.374 1.402 28.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.193 4.193 3 Si 0.782 3.218 4 H -0.189 1.189 5 H -0.212 1.212 6 H -0.158 1.158 7 C -0.579 4.579 8 H 0.046 0.954 9 C -0.050 4.050 10 C 0.021 3.979 11 N -0.362 5.362 12 C 0.333 3.667 13 O -0.462 6.462 14 C -0.140 4.140 15 C -0.106 4.106 16 C -0.134 4.134 17 C -0.087 4.087 18 C -0.124 4.124 19 C -0.073 4.073 20 C -0.045 4.045 21 N -0.298 5.298 22 C -0.047 4.047 23 H 0.077 0.923 24 H 0.057 0.943 25 H 0.055 0.945 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.250 0.750 29 H 0.167 0.833 30 H 0.188 0.812 31 H 0.182 0.818 32 H 0.076 0.924 33 H 0.092 0.908 34 H 0.176 0.824 35 H 0.127 0.873 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 27.627 -5.861 0.676 28.249 hybrid contribution -0.863 0.636 0.938 1.424 sum 26.764 -5.225 1.614 27.317 Atomic orbital electron populations 1.70081 1.08629 1.28483 1.51873 1.26103 0.95712 1.03947 0.93580 0.85526 0.79713 0.77183 0.79395 1.18921 1.21195 1.15809 1.21242 0.91538 0.93407 1.51747 0.95386 1.19653 0.94493 0.92657 0.98182 1.21072 0.78011 0.98726 1.00073 1.45977 1.07547 1.08758 1.73906 1.18864 0.88286 0.83583 0.75919 1.90712 1.71042 1.32498 1.51950 1.19434 0.91063 0.94568 1.08925 1.21601 0.95862 0.96256 0.96895 1.21482 0.93022 0.99673 0.99255 1.21130 1.01883 0.89923 0.95771 1.20942 0.92907 0.97004 1.01582 1.20680 0.95346 0.94214 0.97097 1.21295 0.94611 0.88838 0.99794 1.63537 1.01299 1.05782 1.59189 1.21539 0.94642 0.87146 1.01367 0.92285 0.94316 0.94506 0.93717 0.93633 0.75030 0.83288 0.81245 0.81850 0.92372 0.90804 0.82407 0.87266 0.90344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.57 13.96 21.45 0.30 -59.27 16 2 C 0.00 0.21 5.47 84.66 0.46 0.68 16 3 Si 0.96 42.14 27.47 68.60 1.88 44.03 16 4 H -0.26 -11.08 7.11 99.48 0.71 -10.38 16 5 H -0.29 -12.48 7.11 99.48 0.71 -11.78 16 6 H -0.24 -9.09 6.54 99.48 0.65 -8.44 16 7 C -0.54 -31.17 9.66 25.60 0.25 -30.92 16 8 H 0.03 1.81 7.99 -2.91 -0.02 1.79 16 9 C -0.01 -0.54 4.16 29.85 0.12 -0.42 16 10 C 0.14 6.10 5.61 86.38 0.48 6.58 16 11 N -0.71 -23.77 5.51 -465.98 -2.57 -26.34 16 12 C 0.54 19.23 7.77 86.79 0.67 19.90 16 13 O -0.58 -24.95 14.87 -3.87 -0.06 -25.01 16 14 C -0.14 -3.78 5.87 -20.11 -0.12 -3.90 16 15 C -0.09 -1.71 9.54 22.53 0.21 -1.50 16 16 C -0.12 -1.61 10.03 22.23 0.22 -1.39 16 17 C -0.07 -0.95 10.04 22.32 0.22 -0.73 16 18 C -0.12 -2.40 6.26 -19.70 -0.12 -2.52 16 19 C -0.07 -1.91 6.10 -19.43 -0.12 -2.03 16 20 C 0.08 2.23 6.36 85.48 0.54 2.78 16 21 N -0.67 -13.35 7.72 -514.66 -3.97 -17.32 16 22 C 0.08 1.24 7.46 85.50 0.64 1.88 16 23 H 0.27 15.57 8.31 -92.70 -0.77 14.80 16 24 H 0.04 1.62 7.20 -2.39 -0.02 1.60 16 25 H 0.04 1.53 7.57 -2.38 -0.02 1.51 16 26 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 27 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 28 H 0.41 10.71 6.51 -92.70 -0.60 10.11 16 29 H 0.15 2.27 6.41 -2.91 -0.02 2.25 16 30 H 0.17 1.12 8.06 -2.91 -0.02 1.09 16 31 H 0.16 1.06 8.06 -2.91 -0.02 1.04 16 32 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.07 2.42 7.28 -2.39 -0.02 2.41 16 34 H 0.36 5.32 8.92 -89.70 -0.80 4.52 16 35 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -75.99 301.61 -1.28 -77.27 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: -0.35 Total: 18.22 kcal Atomic # 6 Polarization: -15.06 SS G_CDS: 3.48 Total: -11.58 kcal Atomic # 7 Polarization: -96.69 SS G_CDS: -6.24 Total: -102.93 kcal Atomic # 8 Polarization: -24.95 SS G_CDS: -0.06 Total: -25.01 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 1.88 Total: 44.03 kcal Total: -75.99 -1.28 -77.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692806765.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.656 kcal (2) G-P(sol) polarization free energy of solvation -75.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds