Wall clock time and date at job start Mon Mar 30 2020 04:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86802 * 119.99942 * 2 1 4 4 H 1.48498 * 109.46961 * 270.00134 * 3 2 1 5 5 H 1.48504 * 109.47106 * 29.99860 * 3 2 1 6 6 H 1.48499 * 109.47094 * 150.00161 * 3 2 1 7 7 C 1.38954 * 120.00228 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99922 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99596 * 359.97438 * 7 2 1 10 10 C 1.34773 * 119.99422 * 179.97438 * 9 7 2 11 11 O 1.21291 * 120.00349 * 0.02562 * 10 9 7 12 12 C 1.50706 * 119.99901 * 180.02562 * 10 9 7 13 13 N 1.46893 * 109.47310 * 179.97438 * 12 10 9 14 14 C 1.46896 * 111.00023 * 180.02562 * 13 12 10 15 15 H 1.09009 * 110.81477 * 328.33160 * 14 13 12 16 16 C 1.55028 * 110.88141 * 91.67991 * 14 13 12 17 17 C 1.54265 * 104.28349 * 156.09780 * 16 14 13 18 18 H 1.09002 * 117.75799 * 116.84284 * 17 16 14 19 19 C 1.53876 * 106.59932 * 336.48969 * 17 16 14 20 20 H 1.09001 * 121.33290 * 138.05922 * 19 17 16 21 21 C 1.54266 * 106.59868 * 359.97438 * 19 17 16 22 22 C 1.53008 * 60.87425 * 246.51838 * 19 17 16 23 23 F 1.39900 * 117.45662 * 108.12446 * 22 19 17 24 24 F 1.39892 * 117.45847 * 252.93235 * 22 19 17 25 25 H 0.97000 * 120.00162 * 0.02562 * 1 2 3 26 26 H 0.96992 * 119.99994 * 0.02562 * 9 7 2 27 27 H 1.09010 * 109.46633 * 59.99796 * 12 10 9 28 28 H 1.08996 * 109.47321 * 300.00639 * 12 10 9 29 29 H 1.00900 * 111.00157 * 56.04912 * 13 12 10 30 30 H 1.09003 * 110.36346 * 37.43208 * 16 14 13 31 31 H 1.08999 * 110.52597 * 274.85105 * 16 14 13 32 32 H 1.09002 * 110.48629 * 142.29287 * 21 19 17 33 33 H 1.08998 * 110.48744 * 264.80191 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5457 1.4402 0.7000 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3907 0.0016 10 6 1.9974 -3.5578 0.0016 11 8 3.2103 -3.5578 0.0011 12 6 1.2439 -4.8630 0.0022 13 7 2.1985 -5.9795 0.0014 14 6 1.4982 -7.2708 0.0014 15 1 0.5515 -7.1980 0.5368 16 6 1.2715 -7.7763 -1.4465 17 6 1.1270 -9.3050 -1.2976 18 1 0.1743 -9.7545 -1.5775 19 6 1.8385 -9.6883 0.0118 20 1 1.4056 -10.4135 0.7008 21 6 2.3911 -8.3793 0.6126 22 6 2.4166 -10.1730 -1.3194 23 9 3.6028 -9.5780 -1.7623 24 9 2.2693 -11.5287 -1.6312 25 1 -0.4850 0.8400 -0.0004 26 1 0.3535 -2.3906 0.0016 27 1 0.6168 -4.9208 -0.8876 28 1 0.6175 -4.9205 0.8923 29 1 2.8339 -5.9124 0.7823 30 1 2.1306 -7.5335 -2.0719 31 1 0.3611 -7.3458 -1.8635 32 1 2.2975 -8.3887 1.6985 33 1 3.4317 -8.2354 0.3216 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693366701.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:11 Heat of formation + Delta-G solvation = -103.233552 kcal Electronic energy + Delta-G solvation = -18989.097985 eV Core-core repulsion = 15493.341330 eV Total energy + Delta-G solvation = -3495.756655 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.108 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.77614 -47.46555 -39.38491 -38.10666 -34.91156 -33.80033 -31.24816 -29.88158 -28.67164 -26.23755 -24.01197 -22.05524 -20.65948 -20.29266 -19.22079 -17.97362 -17.88482 -16.97188 -16.20853 -16.02668 -15.19771 -15.14679 -14.69415 -14.43782 -14.14707 -13.85993 -13.68764 -13.45809 -13.18611 -12.92181 -12.50420 -11.99005 -11.88634 -11.68458 -11.51304 -11.36856 -11.04788 -11.02589 -10.44293 -10.39747 -10.22366 -9.93833 -9.51624 -8.47669 -8.12459 -7.96972 -6.42530 -3.83340 2.71582 2.79593 3.17748 3.26428 3.32287 3.87221 3.90470 3.91476 4.15960 4.36801 4.48321 4.70795 4.80606 5.00421 5.12519 5.20606 5.23120 5.32500 5.41094 5.57759 5.71462 5.75231 5.81727 5.93923 5.96394 6.13314 6.28724 7.19866 7.54666 7.60798 8.05568 8.60361 9.17188 9.53380 10.04771 10.75204 Molecular weight = 260.11amu Principal moments of inertia in cm(-1) A = 0.058777 B = 0.003385 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.259040 B = 8269.872525 C = 8419.911422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.300 4.300 8 H 0.103 0.897 9 N -0.563 5.563 10 C 0.440 3.560 11 O -0.583 6.583 12 C 0.051 3.949 13 N -0.659 5.659 14 C 0.086 3.914 15 H 0.059 0.941 16 C -0.091 4.091 17 C -0.152 4.152 18 H 0.135 0.865 19 C -0.157 4.157 20 H 0.133 0.867 21 C -0.103 4.103 22 C 0.207 3.793 23 F -0.154 7.154 24 F -0.162 7.162 25 H 0.271 0.729 26 H 0.392 0.608 27 H 0.086 0.914 28 H 0.045 0.955 29 H 0.353 0.647 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.228 -18.050 0.454 18.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.429 4.429 8 H 0.121 0.879 9 N -0.200 5.200 10 C 0.225 3.775 11 O -0.467 6.467 12 C -0.082 4.082 13 N -0.292 5.292 14 C -0.025 4.025 15 H 0.077 0.923 16 C -0.129 4.129 17 C -0.171 4.171 18 H 0.153 0.847 19 C -0.176 4.176 20 H 0.151 0.849 21 C -0.141 4.141 22 C 0.171 3.829 23 F -0.135 7.135 24 F -0.142 7.142 25 H 0.081 0.919 26 H 0.225 0.775 27 H 0.104 0.896 28 H 0.063 0.937 29 H 0.174 0.826 30 H 0.110 0.890 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.416 -17.864 -0.226 17.922 hybrid contribution -0.509 0.541 0.732 1.043 sum -1.925 -17.323 0.506 17.437 Atomic orbital electron populations 1.69611 1.05944 1.28168 1.50629 1.25263 0.95634 0.99732 0.97300 0.85855 0.79224 0.80768 0.78429 1.20371 1.20948 1.19405 1.19712 0.93392 0.82235 1.47579 0.87904 1.41860 1.09191 1.04604 1.64360 1.19803 0.88398 0.84717 0.84546 1.90530 1.13743 1.87043 1.55350 1.21739 0.94320 0.90936 1.01216 1.60040 1.18542 0.99256 1.51386 1.22655 0.95783 0.89152 0.94888 0.92310 1.22082 1.03849 0.88940 0.98029 1.25001 0.95121 0.96858 1.00138 0.84749 1.24488 1.01510 1.00301 0.91315 0.84913 1.22190 1.01207 0.90371 1.00324 1.20604 0.84282 0.76502 1.01537 1.93028 1.47612 1.82394 1.90427 1.93004 1.95567 1.31738 1.93914 0.91871 0.77466 0.89565 0.93742 0.82624 0.89014 0.90142 0.90039 0.89073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.41 13.05 55.50 0.72 -23.68 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 20.98 29.55 -169.99 -5.02 15.96 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.30 -8.33 9.68 -14.93 -0.14 -8.48 16 8 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 9 N -0.56 -14.16 5.29 -10.96 -0.06 -14.21 16 10 C 0.44 10.26 7.82 -10.98 -0.09 10.17 16 11 O -0.58 -15.74 15.78 5.55 0.09 -15.65 16 12 C 0.05 0.86 6.03 -4.98 -0.03 0.83 16 13 N -0.66 -10.20 6.03 -105.80 -0.64 -10.84 16 14 C 0.09 0.98 3.24 -65.63 -0.21 0.77 16 15 H 0.06 0.62 7.83 -51.92 -0.41 0.21 16 16 C -0.09 -1.00 6.23 -25.00 -0.16 -1.16 16 17 C -0.15 -1.40 7.03 -88.19 -0.62 -2.02 16 18 H 0.13 0.97 8.14 -51.93 -0.42 0.55 16 19 C -0.16 -1.40 6.84 -89.50 -0.61 -2.01 16 20 H 0.13 0.91 8.14 -51.93 -0.42 0.49 16 21 C -0.10 -1.03 5.90 -25.06 -0.15 -1.17 16 22 C 0.21 2.28 5.22 -25.42 -0.13 2.15 16 23 F -0.15 -2.06 16.33 2.25 0.04 -2.02 16 24 F -0.16 -1.85 17.60 2.25 0.04 -1.81 16 25 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 26 H 0.39 9.38 7.90 -40.82 -0.32 9.06 16 27 H 0.09 1.35 8.14 -51.92 -0.42 0.93 16 28 H 0.04 0.67 8.08 -51.93 -0.42 0.25 16 29 H 0.35 5.62 8.13 -39.29 -0.32 5.30 16 30 H 0.09 1.21 7.76 -51.93 -0.40 0.80 16 31 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.09 1.04 7.62 -51.93 -0.40 0.65 16 LS Contribution 291.94 15.07 4.40 4.40 Total: -1.00 -30.94 291.94 -6.56 -37.50 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -3.89 Total: 10.79 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: -2.24 Total: -0.42 kcal Atomic # 7 Polarization: -48.77 SS G_CDS: 0.03 Total: -48.74 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: 0.09 Total: -15.65 kcal Atomic # 9 Polarization: -3.91 SS G_CDS: 0.08 Total: -3.83 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.94 -6.56 -37.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693366701.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.731 kcal (2) G-P(sol) polarization free energy of solvation -30.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds