Wall clock time and date at job start Mon Mar 30 2020 04:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86802 * 119.99942 * 2 1 4 4 H 1.48498 * 109.46961 * 270.00134 * 3 2 1 5 5 H 1.48504 * 109.47106 * 29.99860 * 3 2 1 6 6 H 1.48499 * 109.47094 * 150.00161 * 3 2 1 7 7 C 1.38954 * 120.00228 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99922 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99596 * 359.97438 * 7 2 1 10 10 C 1.34773 * 119.99422 * 179.97438 * 9 7 2 11 11 O 1.21291 * 120.00349 * 0.02562 * 10 9 7 12 12 C 1.50706 * 119.99901 * 180.02562 * 10 9 7 13 13 N 1.46893 * 109.47310 * 179.97438 * 12 10 9 14 14 C 1.46896 * 111.00023 * 180.02562 * 13 12 10 15 15 H 1.09009 * 110.81477 * 328.33160 * 14 13 12 16 16 C 1.55028 * 110.88141 * 91.67991 * 14 13 12 17 17 C 1.54265 * 104.28349 * 156.09780 * 16 14 13 18 18 H 1.09002 * 117.75799 * 116.84284 * 17 16 14 19 19 C 1.53876 * 106.59932 * 336.48969 * 17 16 14 20 20 H 1.09001 * 121.33290 * 138.05922 * 19 17 16 21 21 C 1.54266 * 106.59868 * 359.97438 * 19 17 16 22 22 C 1.53008 * 60.87425 * 246.51838 * 19 17 16 23 23 F 1.39900 * 117.45662 * 108.12446 * 22 19 17 24 24 F 1.39892 * 117.45847 * 252.93235 * 22 19 17 25 25 H 0.97000 * 120.00162 * 0.02562 * 1 2 3 26 26 H 0.96992 * 119.99994 * 0.02562 * 9 7 2 27 27 H 1.09010 * 109.46633 * 59.99796 * 12 10 9 28 28 H 1.08996 * 109.47321 * 300.00639 * 12 10 9 29 29 H 1.00900 * 111.00157 * 56.04912 * 13 12 10 30 30 H 1.09003 * 110.36346 * 37.43208 * 16 14 13 31 31 H 1.08999 * 110.52597 * 274.85105 * 16 14 13 32 32 H 1.09002 * 110.48629 * 142.29287 * 21 19 17 33 33 H 1.08998 * 110.48744 * 264.80191 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5457 1.4402 0.7000 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3907 0.0016 10 6 1.9974 -3.5578 0.0016 11 8 3.2103 -3.5578 0.0011 12 6 1.2439 -4.8630 0.0022 13 7 2.1985 -5.9795 0.0014 14 6 1.4982 -7.2708 0.0014 15 1 0.5515 -7.1980 0.5368 16 6 1.2715 -7.7763 -1.4465 17 6 1.1270 -9.3050 -1.2976 18 1 0.1743 -9.7545 -1.5775 19 6 1.8385 -9.6883 0.0118 20 1 1.4056 -10.4135 0.7008 21 6 2.3911 -8.3793 0.6126 22 6 2.4166 -10.1730 -1.3194 23 9 3.6028 -9.5780 -1.7623 24 9 2.2693 -11.5287 -1.6312 25 1 -0.4850 0.8400 -0.0004 26 1 0.3535 -2.3906 0.0016 27 1 0.6168 -4.9208 -0.8876 28 1 0.6175 -4.9205 0.8923 29 1 2.8339 -5.9124 0.7823 30 1 2.1306 -7.5335 -2.0719 31 1 0.3611 -7.3458 -1.8635 32 1 2.2975 -8.3887 1.6985 33 1 3.4317 -8.2354 0.3216 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693366701.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:11 Heat of formation + Delta-G solvation = -124.994858 kcal Electronic energy + Delta-G solvation = -18990.041626 eV Core-core repulsion = 15493.341330 eV Total energy + Delta-G solvation = -3496.700296 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.108 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.64342 -48.35740 -40.43951 -39.75994 -36.29479 -35.61032 -33.26101 -30.97751 -29.48075 -27.85183 -25.70809 -22.94638 -21.55796 -21.19346 -20.90093 -19.88979 -18.78617 -17.90293 -17.75134 -16.96405 -16.73511 -16.36485 -16.02957 -15.96111 -15.38059 -15.14304 -14.99641 -14.61619 -14.28871 -13.93175 -13.78849 -13.54239 -13.28911 -12.96001 -12.88319 -12.45579 -12.41233 -12.33379 -12.11444 -11.91030 -11.50336 -11.28314 -10.70919 -10.32935 -10.00793 -9.33278 -8.46300 -5.94868 1.38575 1.42537 1.55033 1.93325 2.02446 2.06552 2.29956 2.86394 3.16675 3.21287 3.31086 3.57648 3.66330 3.94978 4.05715 4.21785 4.32466 4.36690 4.43541 4.55883 4.60462 4.67320 4.78301 4.95179 5.06527 5.11301 5.25618 5.41730 5.92591 6.14718 6.40886 6.61121 7.13483 7.57343 8.12960 8.71042 Molecular weight = 260.11amu Principal moments of inertia in cm(-1) A = 0.058777 B = 0.003385 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.259040 B = 8269.872525 C = 8419.911422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.012 4.012 3 Si 0.992 3.008 4 H -0.272 1.272 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.335 4.335 8 H 0.078 0.922 9 N -0.573 5.573 10 C 0.436 3.564 11 O -0.625 6.625 12 C 0.067 3.933 13 N -0.678 5.678 14 C 0.086 3.914 15 H 0.082 0.918 16 C -0.094 4.094 17 C -0.137 4.137 18 H 0.163 0.837 19 C -0.137 4.137 20 H 0.164 0.836 21 C -0.103 4.103 22 C 0.177 3.823 23 F -0.176 7.176 24 F -0.167 7.167 25 H 0.278 0.722 26 H 0.397 0.603 27 H 0.104 0.896 28 H 0.073 0.927 29 H 0.348 0.652 30 H 0.062 0.938 31 H 0.093 0.907 32 H 0.103 0.897 33 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.837 -18.743 1.086 19.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.212 4.212 3 Si 0.815 3.185 4 H -0.197 1.197 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.465 4.465 8 H 0.096 0.904 9 N -0.210 5.210 10 C 0.223 3.777 11 O -0.512 6.512 12 C -0.065 4.065 13 N -0.311 5.311 14 C -0.024 4.024 15 H 0.100 0.900 16 C -0.133 4.133 17 C -0.156 4.156 18 H 0.181 0.819 19 C -0.156 4.156 20 H 0.181 0.819 21 C -0.140 4.140 22 C 0.140 3.860 23 F -0.157 7.157 24 F -0.147 7.147 25 H 0.087 0.913 26 H 0.231 0.769 27 H 0.122 0.878 28 H 0.090 0.910 29 H 0.168 0.832 30 H 0.081 0.919 31 H 0.111 0.889 32 H 0.121 0.879 33 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.057 -18.580 0.401 18.834 hybrid contribution 0.021 0.710 0.514 0.877 sum -3.036 -17.870 0.915 18.149 Atomic orbital electron populations 1.69664 1.06770 1.29299 1.50317 1.26016 0.96542 1.02338 0.96265 0.84946 0.77920 0.76969 0.78621 1.19746 1.19462 1.19797 1.19663 0.92689 0.84128 1.49976 0.90446 1.41924 1.09347 1.04677 1.65050 1.20957 0.88274 0.86287 0.82142 1.90498 1.16004 1.87997 1.56666 1.21593 0.93908 0.87765 1.03278 1.60013 1.18983 1.00510 1.51593 1.22768 0.96598 0.87428 0.95583 0.89995 1.22076 1.03229 0.90525 0.97421 1.25045 0.95206 0.95325 1.00000 0.81910 1.24571 1.00044 0.99946 0.91030 0.81888 1.22178 0.99758 0.90464 1.01646 1.21057 0.84442 0.76583 1.03879 1.92978 1.49066 1.82781 1.90870 1.92985 1.95545 1.32057 1.94129 0.91279 0.76891 0.87786 0.90967 0.83213 0.91879 0.88856 0.87865 0.91222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.19 13.05 21.66 0.28 -48.91 16 2 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 3 Si 0.99 42.80 29.55 68.60 2.03 44.83 16 4 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 5 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 6 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 7 C -0.33 -19.00 9.68 84.04 0.81 -18.19 16 8 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 9 N -0.57 -29.06 5.29 -306.98 -1.62 -30.68 16 10 C 0.44 20.45 7.82 87.66 0.69 21.14 16 11 O -0.63 -34.66 15.78 -3.06 -0.05 -34.71 16 12 C 0.07 2.16 6.03 85.56 0.52 2.68 16 13 N -0.68 -20.27 6.03 -488.63 -2.94 -23.21 16 14 C 0.09 1.76 3.24 46.26 0.15 1.91 16 15 H 0.08 1.38 7.83 -2.38 -0.02 1.36 16 16 C -0.09 -1.90 6.23 31.72 0.20 -1.70 16 17 C -0.14 -2.16 7.03 -9.22 -0.06 -2.22 16 18 H 0.16 1.68 8.14 -2.39 -0.02 1.66 16 19 C -0.14 -2.05 6.84 -10.07 -0.07 -2.12 16 20 H 0.16 1.51 8.14 -2.39 -0.02 1.49 16 21 C -0.10 -1.83 5.90 31.68 0.19 -1.64 16 22 C 0.18 3.67 5.22 31.45 0.16 3.84 16 23 F -0.18 -4.79 16.33 44.97 0.73 -4.05 16 24 F -0.17 -3.61 17.60 44.97 0.79 -2.82 16 25 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 26 H 0.40 18.97 7.90 -92.71 -0.73 18.24 16 27 H 0.10 3.03 8.14 -2.38 -0.02 3.01 16 28 H 0.07 1.97 8.08 -2.39 -0.02 1.95 16 29 H 0.35 10.94 8.13 -89.69 -0.73 10.21 16 30 H 0.06 1.66 7.76 -2.39 -0.02 1.64 16 31 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.07 1.57 7.62 -2.39 -0.02 1.55 16 Total: -1.00 -68.25 291.94 1.96 -66.28 By element: Atomic # 1 Polarization: 30.05 SS G_CDS: -0.30 Total: 29.74 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: 3.05 Total: 3.53 kcal Atomic # 7 Polarization: -98.52 SS G_CDS: -4.28 Total: -102.81 kcal Atomic # 8 Polarization: -34.66 SS G_CDS: -0.05 Total: -34.71 kcal Atomic # 9 Polarization: -8.40 SS G_CDS: 1.53 Total: -6.87 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -68.25 1.96 -66.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693366701.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.711 kcal (2) G-P(sol) polarization free energy of solvation -68.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds